Wall clock time and date at job start Mon Mar 30 2020 06:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47195 * 2 1 4 4 C 1.52998 * 109.46980 * 239.99343 * 2 1 3 5 5 C 1.50706 * 109.46964 * 119.99771 * 2 1 3 6 6 C 1.38234 * 120.00196 * 60.00061 * 5 2 1 7 7 C 1.38235 * 119.99814 * 179.97438 * 6 5 2 8 8 C 1.38230 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00309 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47379 * 89.99746 * 9 8 7 11 11 N 1.46900 * 109.46909 * 329.99835 * 9 8 7 12 12 C 1.50705 * 109.47342 * 210.00183 * 9 8 7 13 13 H 1.07997 * 119.99721 * 0.02562 * 12 9 8 14 14 C 1.37873 * 119.99983 * 180.02562 * 12 9 8 15 15 N 1.31518 * 120.00124 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99967 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47148 * 59.99587 * 16 14 12 18 18 H 1.48495 * 109.46975 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46898 * 299.99483 * 16 14 12 20 20 C 1.38243 * 120.00092 * 359.97438 * 8 7 6 21 21 C 1.38234 * 119.99618 * 359.97438 * 20 8 7 22 22 H 1.09009 * 109.46612 * 300.00220 * 1 2 3 23 23 H 1.08991 * 109.47096 * 59.99808 * 1 2 3 24 24 H 1.08992 * 109.47275 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47063 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.46742 * 299.99529 * 3 2 1 27 27 H 1.08993 * 109.47496 * 60.00002 * 3 2 1 28 28 H 1.09001 * 109.47153 * 300.00225 * 4 2 1 29 29 H 1.09001 * 109.46779 * 60.00019 * 4 2 1 30 30 H 1.09003 * 109.46942 * 179.97438 * 4 2 1 31 31 H 1.08000 * 119.99516 * 0.24808 * 6 5 2 32 32 H 1.08000 * 119.99297 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47147 * 60.00286 * 10 9 8 34 34 H 1.09001 * 109.47484 * 180.02562 * 10 9 8 35 35 H 1.09003 * 109.47460 * 300.00527 * 10 9 8 36 36 H 1.00901 * 111.00072 * 176.04649 * 11 9 8 37 37 H 1.00903 * 111.00234 * 300.00153 * 11 9 8 38 38 H 0.97001 * 120.00016 * 180.02562 * 15 14 12 39 39 H 1.07999 * 120.00235 * 179.97438 * 20 8 7 40 40 H 1.08005 * 119.99804 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.6984 -2.0338 1.4494 7 6 2.1596 -2.6855 2.5779 8 6 2.9552 -2.0140 3.4872 9 6 3.4575 -2.7243 4.7177 10 6 4.8046 -3.3822 4.4126 11 7 2.4893 -3.7538 5.1183 12 6 3.6261 -1.7303 5.8379 13 1 3.3924 -0.6886 5.6751 14 6 4.0786 -2.1509 7.0704 15 7 4.3627 -3.4196 7.2688 16 14 4.2869 -0.9190 8.4592 17 1 2.9789 -0.2814 8.7556 18 1 4.7820 -1.6190 9.6716 19 1 5.2648 0.1225 8.0543 20 6 3.2900 -0.6908 3.2679 21 6 2.8297 -0.0394 2.1389 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9562 -0.8901 27 1 1.6767 1.9563 0.8899 28 1 1.6766 -1.7490 -1.2491 29 1 1.6766 -0.2076 -2.1392 30 1 3.1300 -0.7210 -1.2494 31 1 1.0808 -2.5598 0.7364 32 1 1.8983 -3.7194 2.7490 33 1 5.5231 -2.6183 4.1154 34 1 5.1677 -3.8963 5.3025 35 1 4.6827 -4.1011 3.6024 36 1 2.8327 -4.2876 5.9027 37 1 1.5907 -3.3442 5.3253 38 1 4.6807 -3.7156 8.1360 39 1 3.9112 -0.1660 3.9785 40 1 3.0909 0.9945 1.9677 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084396845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:53 Heat of formation + Delta-G solvation = 3.420772 kcal Electronic energy + Delta-G solvation = -18338.095403 eV Core-core repulsion = 15730.678303 eV Total energy + Delta-G solvation = -2607.417100 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.36350 -36.84081 -34.52803 -31.47598 -30.40565 -28.67185 -27.23224 -27.13347 -26.98601 -25.23799 -22.61733 -21.42431 -19.56022 -18.55385 -16.40429 -16.02364 -14.90461 -14.44745 -14.20686 -14.10661 -13.87033 -13.32971 -13.11355 -12.79143 -12.60771 -12.45150 -12.22319 -11.80645 -11.60368 -11.44702 -11.25208 -11.02762 -10.94100 -10.88489 -10.69454 -10.44960 -10.38865 -10.12805 -10.04349 -9.61259 -9.35784 -8.58923 -8.08282 -7.62156 -7.12986 -6.04456 -4.21590 2.21249 2.24274 3.23951 3.29385 3.32297 4.32500 4.59979 4.87488 4.96862 5.15120 5.18277 5.53957 5.65249 5.69461 5.69710 5.73218 5.85874 5.96159 5.96741 6.03700 6.14396 6.19066 6.24206 6.43196 6.43393 6.50707 6.58549 6.83208 6.90011 7.04733 7.10557 7.26813 7.32513 7.49102 7.67449 7.78149 7.86689 7.99243 8.22488 8.74183 8.97509 9.16826 9.50983 10.90348 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.033566 B = 0.005885 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.977258 B = 4756.761619 C = 5171.185612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.025 4.025 3 C -0.141 4.141 4 C -0.136 4.136 5 C -0.098 4.098 6 C -0.129 4.129 7 C -0.109 4.109 8 C -0.038 4.038 9 C 0.263 3.737 10 C -0.120 4.120 11 N -0.846 5.846 12 C -0.540 4.540 13 H 0.059 0.941 14 C 0.068 3.932 15 N -0.891 5.891 16 Si 0.893 3.107 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.110 4.110 21 C -0.134 4.134 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.028 0.972 34 H 0.084 0.916 35 H 0.016 0.984 36 H 0.354 0.646 37 H 0.313 0.687 38 H 0.264 0.736 39 H 0.124 0.876 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 4.999 -11.781 13.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.025 4.025 3 C -0.198 4.198 4 C -0.193 4.193 5 C -0.098 4.098 6 C -0.147 4.147 7 C -0.127 4.127 8 C -0.038 4.038 9 C 0.171 3.829 10 C -0.179 4.179 11 N -0.376 5.376 12 C -0.579 4.579 13 H 0.077 0.923 14 C -0.134 4.134 15 N -0.530 5.530 16 Si 0.721 3.279 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.128 4.128 21 C -0.152 4.152 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.143 0.857 33 H 0.047 0.953 34 H 0.103 0.897 35 H 0.036 0.964 36 H 0.171 0.829 37 H 0.122 0.878 38 H 0.074 0.926 39 H 0.142 0.858 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.328 4.547 -12.365 13.867 hybrid contribution 0.153 1.247 1.832 2.221 sum -4.175 5.794 -10.533 12.726 Atomic orbital electron populations 1.21866 0.94380 1.01830 1.01229 1.19396 0.95181 0.94703 0.93222 1.21928 1.01158 0.95409 1.01307 1.21869 1.01170 1.00154 0.96112 1.19518 0.99962 0.94372 0.95974 1.20829 1.01523 0.94285 0.98068 1.21137 0.97790 1.00433 0.93364 1.20454 0.94009 0.93269 0.96084 1.17284 0.89270 0.88449 0.87869 1.21675 0.97053 0.98473 1.00659 1.59407 1.05259 1.27776 1.45112 1.21952 1.44650 0.95329 0.96006 0.92298 1.24975 0.94546 0.95319 0.98568 1.69680 1.45481 1.14147 1.23730 0.86640 0.78502 0.81364 0.81396 1.20366 1.21263 1.20264 1.21258 1.00003 0.95047 0.96486 1.21050 0.99598 0.99406 0.95137 0.92644 0.93053 0.92555 0.92395 0.93070 0.92386 0.92557 0.93048 0.92652 0.87639 0.85688 0.95250 0.89740 0.96442 0.82937 0.87826 0.92597 0.85778 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.29 37.16 0.31 -1.28 16 2 C -0.03 -0.32 0.85 -155.66 -0.13 -0.45 16 3 C -0.14 -1.63 7.13 37.16 0.26 -1.37 16 4 C -0.14 -1.58 8.29 37.16 0.31 -1.27 16 5 C -0.10 -1.59 4.76 -104.62 -0.50 -2.09 16 6 C -0.13 -2.21 8.71 -39.58 -0.34 -2.56 16 7 C -0.11 -2.16 9.32 -39.59 -0.37 -2.53 16 8 C -0.04 -0.82 4.79 -104.63 -0.50 -1.32 16 9 C 0.26 6.33 0.76 -133.91 -0.10 6.23 16 10 C -0.12 -2.93 8.49 37.15 0.32 -2.62 16 11 N -0.85 -19.80 7.72 -1.14 -0.01 -19.81 16 12 C -0.54 -14.06 7.55 -34.44 -0.26 -14.32 16 13 H 0.06 1.54 6.03 -52.49 -0.32 1.23 16 14 C 0.07 1.77 5.22 -17.82 -0.09 1.68 16 15 N -0.89 -23.61 9.57 55.43 0.53 -23.08 16 16 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.11 -2.26 8.89 -39.58 -0.35 -2.61 16 21 C -0.13 -2.36 8.98 -39.58 -0.36 -2.72 16 22 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.66 7.39 -51.93 -0.38 0.27 16 25 H 0.06 0.68 7.51 -51.93 -0.39 0.29 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.68 7.52 -51.93 -0.39 0.29 16 28 H 0.06 0.65 7.38 -51.93 -0.38 0.27 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.11 1.58 7.10 -52.49 -0.37 1.20 16 32 H 0.13 2.49 7.40 -52.49 -0.39 2.10 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.35 8.85 7.00 -39.29 -0.27 8.58 16 37 H 0.31 7.19 8.98 -39.29 -0.35 6.84 16 38 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 39 H 0.12 2.65 6.43 -52.49 -0.34 2.32 16 40 H 0.11 1.72 5.90 -52.48 -0.31 1.42 16 LS Contribution 310.19 15.07 4.67 4.67 Total: -1.00 -26.04 310.19 -7.94 -33.98 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -6.31 Total: 15.83 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -1.81 Total: -27.23 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.52 Total: -42.89 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.04 -7.94 -33.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084396845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.404 kcal (2) G-P(sol) polarization free energy of solvation -26.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds