Wall clock time and date at job start Mon Mar 30 2020 06:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47195 * 2 1 4 4 C 1.52998 * 109.46980 * 239.99343 * 2 1 3 5 5 C 1.50706 * 109.46964 * 119.99771 * 2 1 3 6 6 C 1.38234 * 120.00196 * 60.00061 * 5 2 1 7 7 C 1.38235 * 119.99814 * 179.97438 * 6 5 2 8 8 C 1.38230 * 120.00326 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00309 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47379 * 89.99746 * 9 8 7 11 11 N 1.46900 * 109.46909 * 329.99835 * 9 8 7 12 12 C 1.50705 * 109.47342 * 210.00183 * 9 8 7 13 13 H 1.07997 * 119.99721 * 0.02562 * 12 9 8 14 14 C 1.37873 * 119.99983 * 180.02562 * 12 9 8 15 15 N 1.31518 * 120.00124 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99967 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47148 * 59.99587 * 16 14 12 18 18 H 1.48495 * 109.46975 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46898 * 299.99483 * 16 14 12 20 20 C 1.38243 * 120.00092 * 359.97438 * 8 7 6 21 21 C 1.38234 * 119.99618 * 359.97438 * 20 8 7 22 22 H 1.09009 * 109.46612 * 300.00220 * 1 2 3 23 23 H 1.08991 * 109.47096 * 59.99808 * 1 2 3 24 24 H 1.08992 * 109.47275 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47063 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.46742 * 299.99529 * 3 2 1 27 27 H 1.08993 * 109.47496 * 60.00002 * 3 2 1 28 28 H 1.09001 * 109.47153 * 300.00225 * 4 2 1 29 29 H 1.09001 * 109.46779 * 60.00019 * 4 2 1 30 30 H 1.09003 * 109.46942 * 179.97438 * 4 2 1 31 31 H 1.08000 * 119.99516 * 0.24808 * 6 5 2 32 32 H 1.08000 * 119.99297 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47147 * 60.00286 * 10 9 8 34 34 H 1.09001 * 109.47484 * 180.02562 * 10 9 8 35 35 H 1.09003 * 109.47460 * 300.00527 * 10 9 8 36 36 H 1.00901 * 111.00072 * 176.04649 * 11 9 8 37 37 H 1.00903 * 111.00234 * 300.00153 * 11 9 8 38 38 H 0.97001 * 120.00016 * 180.02562 * 15 14 12 39 39 H 1.07999 * 120.00235 * 179.97438 * 20 8 7 40 40 H 1.08005 * 119.99804 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.6984 -2.0338 1.4494 7 6 2.1596 -2.6855 2.5779 8 6 2.9552 -2.0140 3.4872 9 6 3.4575 -2.7243 4.7177 10 6 4.8046 -3.3822 4.4126 11 7 2.4893 -3.7538 5.1183 12 6 3.6261 -1.7303 5.8379 13 1 3.3924 -0.6886 5.6751 14 6 4.0786 -2.1509 7.0704 15 7 4.3627 -3.4196 7.2688 16 14 4.2869 -0.9190 8.4592 17 1 2.9789 -0.2814 8.7556 18 1 4.7820 -1.6190 9.6716 19 1 5.2648 0.1225 8.0543 20 6 3.2900 -0.6908 3.2679 21 6 2.8297 -0.0394 2.1389 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9562 -0.8901 27 1 1.6767 1.9563 0.8899 28 1 1.6766 -1.7490 -1.2491 29 1 1.6766 -0.2076 -2.1392 30 1 3.1300 -0.7210 -1.2494 31 1 1.0808 -2.5598 0.7364 32 1 1.8983 -3.7194 2.7490 33 1 5.5231 -2.6183 4.1154 34 1 5.1677 -3.8963 5.3025 35 1 4.6827 -4.1011 3.6024 36 1 2.8327 -4.2876 5.9027 37 1 1.5907 -3.3442 5.3253 38 1 4.6807 -3.7156 8.1360 39 1 3.9112 -0.1660 3.9785 40 1 3.0909 0.9945 1.9677 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084396845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:52 Heat of formation + Delta-G solvation = -9.635972 kcal Electronic energy + Delta-G solvation = -18338.661586 eV Core-core repulsion = 15730.678303 eV Total energy + Delta-G solvation = -2607.983283 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74422 -38.31001 -36.08757 -33.38420 -31.85744 -30.23877 -28.89805 -28.14766 -28.01692 -27.21548 -24.11063 -22.89941 -21.15571 -19.87424 -18.25372 -17.58182 -16.54857 -15.89125 -15.87116 -15.39781 -15.06972 -14.87928 -14.62181 -14.27344 -14.05058 -13.87428 -13.42028 -13.16788 -12.98052 -12.85346 -12.65155 -12.57872 -12.47604 -12.35596 -12.19423 -12.10888 -11.74103 -11.69964 -11.57805 -11.18637 -11.01671 -10.59650 -9.56360 -9.16500 -9.02785 -8.02613 -6.26452 0.74239 0.75665 1.38227 1.40085 1.46498 2.39393 3.07811 3.17580 3.80993 3.96728 4.21560 4.26869 4.36319 4.43544 4.51481 4.59178 4.77428 4.85989 4.88115 4.96762 4.98183 5.03271 5.09182 5.09514 5.13898 5.22006 5.27036 5.32827 5.41164 5.47290 5.53050 5.58013 5.70620 5.84866 5.92356 5.94559 6.09920 6.24693 6.42767 6.76386 7.04635 7.18815 7.49174 8.88725 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.033566 B = 0.005885 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.977258 B = 4756.761619 C = 5171.185612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.026 4.026 3 C -0.142 4.142 4 C -0.135 4.135 5 C -0.087 4.087 6 C -0.124 4.124 7 C -0.118 4.118 8 C -0.066 4.066 9 C 0.258 3.742 10 C -0.111 4.111 11 N -0.836 5.836 12 C -0.553 4.553 13 H 0.050 0.950 14 C 0.028 3.972 15 N -0.906 5.906 16 Si 0.948 3.052 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.277 1.277 20 C -0.128 4.128 21 C -0.133 4.133 22 H 0.045 0.955 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.133 0.867 32 H 0.119 0.881 33 H 0.023 0.977 34 H 0.063 0.937 35 H 0.023 0.977 36 H 0.344 0.656 37 H 0.314 0.686 38 H 0.263 0.737 39 H 0.106 0.894 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.590 6.228 -13.701 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.026 4.026 3 C -0.199 4.199 4 C -0.192 4.192 5 C -0.088 4.088 6 C -0.142 4.142 7 C -0.137 4.137 8 C -0.067 4.067 9 C 0.166 3.834 10 C -0.169 4.169 11 N -0.364 5.364 12 C -0.593 4.593 13 H 0.069 0.931 14 C -0.172 4.172 15 N -0.546 5.546 16 Si 0.775 3.225 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.202 1.202 20 C -0.146 4.146 21 C -0.151 4.151 22 H 0.064 0.936 23 H 0.093 0.907 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.150 0.850 32 H 0.137 0.863 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.159 0.841 37 H 0.123 0.877 38 H 0.073 0.927 39 H 0.124 0.876 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.389 5.779 -14.295 16.334 hybrid contribution 0.456 0.890 2.341 2.545 sum -4.932 6.669 -11.955 14.551 Atomic orbital electron populations 1.21862 0.93197 1.02121 1.02004 1.19505 0.96058 0.95181 0.91856 1.21936 1.01018 0.94637 1.02274 1.21864 1.00727 1.00328 0.96259 1.19969 0.98067 0.94073 0.96647 1.21091 1.00959 0.94742 0.97359 1.21135 0.98044 1.00312 0.94162 1.20301 0.96195 0.94007 0.96153 1.17278 0.89191 0.88243 0.88681 1.21552 0.97433 0.98216 0.99740 1.59407 1.05134 1.27489 1.44327 1.22177 1.44701 0.95396 0.96980 0.93147 1.25578 0.94512 0.96736 1.00377 1.69782 1.45735 1.15111 1.23971 0.85778 0.78183 0.79497 0.79075 1.20362 1.20926 1.20248 1.21209 1.00878 0.94901 0.97658 1.21284 0.99189 1.00383 0.94197 0.93550 0.90676 0.92548 0.92694 0.90789 0.92836 0.92544 0.90687 0.93402 0.84969 0.86263 0.95756 0.91810 0.95803 0.84100 0.87740 0.92699 0.87566 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 8.29 71.98 0.60 -2.06 16 2 C -0.03 -0.58 0.85 -52.93 -0.05 -0.62 16 3 C -0.14 -2.79 7.13 71.98 0.51 -2.28 16 4 C -0.13 -2.62 8.29 71.98 0.60 -2.03 16 5 C -0.09 -2.65 4.76 -19.86 -0.09 -2.74 16 6 C -0.12 -4.00 8.71 22.27 0.19 -3.81 16 7 C -0.12 -4.64 9.32 22.27 0.21 -4.43 16 8 C -0.07 -2.92 4.79 -19.87 -0.10 -3.02 16 9 C 0.26 12.70 0.76 2.03 0.00 12.71 16 10 C -0.11 -5.56 8.49 71.98 0.61 -4.95 16 11 N -0.84 -39.91 7.72 -157.52 -1.22 -41.13 16 12 C -0.55 -29.44 7.55 25.60 0.19 -29.24 16 13 H 0.05 2.71 6.03 -2.91 -0.02 2.70 16 14 C 0.03 1.49 5.22 84.65 0.44 1.93 16 15 N -0.91 -48.83 9.57 21.45 0.21 -48.62 16 16 Si 0.95 42.85 29.54 68.60 2.03 44.88 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 C -0.13 -5.34 8.89 22.27 0.20 -5.14 16 21 C -0.13 -4.52 8.98 22.27 0.20 -4.32 16 22 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.06 1.11 7.39 -2.39 -0.02 1.09 16 25 H 0.05 1.12 7.51 -2.39 -0.02 1.10 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.10 7.52 -2.39 -0.02 1.09 16 28 H 0.06 1.10 7.38 -2.39 -0.02 1.08 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.13 3.55 7.10 -2.91 -0.02 3.53 16 32 H 0.12 4.73 7.40 -2.91 -0.02 4.71 16 33 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 35 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.34 17.60 7.00 -89.69 -0.63 16.97 16 37 H 0.31 14.70 8.98 -89.69 -0.81 13.90 16 38 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 39 H 0.11 4.71 6.43 -2.91 -0.02 4.69 16 40 H 0.13 3.88 5.90 -2.91 -0.02 3.86 16 Total: -1.00 -55.77 310.19 4.13 -51.64 By element: Atomic # 1 Polarization: 43.64 SS G_CDS: -0.40 Total: 43.24 kcal Atomic # 6 Polarization: -53.53 SS G_CDS: 3.52 Total: -50.01 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -1.01 Total: -89.75 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -55.77 4.13 -51.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084396845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.001 kcal (2) G-P(sol) polarization free energy of solvation -55.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds