Wall clock time and date at job start Mon Mar 30 2020 06:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 C 1.53004 * 109.47066 * 240.00269 * 2 1 3 5 5 C 1.50696 * 109.47025 * 120.00439 * 2 1 3 6 6 C 1.38233 * 120.00456 * 59.99859 * 5 2 1 7 7 C 1.38231 * 120.00305 * 180.02562 * 6 5 2 8 8 C 1.38234 * 119.99919 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99866 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47313 * 270.00151 * 9 8 7 11 11 N 1.46900 * 109.47395 * 30.00446 * 9 8 7 12 12 C 1.50702 * 109.46869 * 150.00039 * 9 8 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 9 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 9 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 9 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.38229 * 120.00140 * 0.25689 * 8 7 6 21 21 C 1.38234 * 119.99767 * 240.01959 * 5 2 1 22 22 H 1.08996 * 109.47399 * 299.99846 * 1 2 3 23 23 H 1.09003 * 109.47387 * 60.00105 * 1 2 3 24 24 H 1.09002 * 109.47656 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46904 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47235 * 299.99985 * 3 2 1 27 27 H 1.08998 * 109.47004 * 60.00369 * 3 2 1 28 28 H 1.09000 * 109.46850 * 299.99977 * 4 2 1 29 29 H 1.08996 * 109.47326 * 59.99955 * 4 2 1 30 30 H 1.09000 * 109.46922 * 180.02562 * 4 2 1 31 31 H 1.07997 * 119.99723 * 359.97438 * 6 5 2 32 32 H 1.08000 * 120.00262 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.47084 * 299.99675 * 10 9 8 34 34 H 1.08994 * 109.47175 * 60.00247 * 10 9 8 35 35 H 1.09001 * 109.47192 * 180.02562 * 10 9 8 36 36 H 1.00903 * 111.00086 * 59.99217 * 11 9 8 37 37 H 1.00902 * 111.00206 * 183.95155 * 11 9 8 38 38 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 39 39 H 1.08002 * 120.00368 * 179.72782 * 20 8 7 40 40 H 1.08002 * 120.00160 * 0.02562 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.6983 -2.0339 1.4491 7 6 2.1587 -2.6855 2.5780 8 6 2.9534 -2.0137 3.4880 9 6 3.4548 -2.7238 4.7190 10 6 2.4466 -2.5468 5.8561 11 7 3.6174 -4.1543 4.4270 12 6 4.7825 -2.1409 5.1294 13 1 5.2194 -1.3364 4.5564 14 6 5.4366 -2.6305 6.2401 15 7 4.9045 -3.6099 6.9380 16 14 7.0786 -1.9027 6.7532 17 1 6.9096 -0.4565 7.0450 18 1 7.5705 -2.5992 7.9691 19 1 8.0616 -2.0742 5.6534 20 6 3.2834 -0.6889 3.2717 21 6 2.8267 -0.0386 2.1405 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 -1.7489 -1.2493 29 1 1.6767 -0.2074 -2.1393 30 1 3.1300 -0.7216 -1.2491 31 1 1.0771 -2.5586 0.7384 32 1 1.8974 -3.7193 2.7491 33 1 2.3261 -1.4853 6.0728 34 1 1.4864 -2.9684 5.5593 35 1 2.8095 -3.0600 6.7466 36 1 4.2789 -4.2978 3.6787 37 1 3.8910 -4.6634 5.2541 38 1 5.3648 -3.9546 7.7192 39 1 3.9007 -0.1628 3.9848 40 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084396848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:55 Heat of formation + Delta-G solvation = 3.383544 kcal Electronic energy + Delta-G solvation = -18338.030073 eV Core-core repulsion = 15730.611359 eV Total energy + Delta-G solvation = -2607.418715 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.36439 -36.84068 -34.52799 -31.47685 -30.40559 -28.67321 -27.23193 -27.13340 -26.98473 -25.23657 -22.61745 -21.42445 -19.56116 -18.55363 -16.40453 -16.02257 -14.90503 -14.44814 -14.20687 -14.10597 -13.87078 -13.33041 -13.11414 -12.79189 -12.60432 -12.45265 -12.22175 -11.80704 -11.60319 -11.44791 -11.25359 -11.02642 -10.94086 -10.88602 -10.69431 -10.44946 -10.38859 -10.12855 -10.04294 -9.61413 -9.35844 -8.58941 -8.08281 -7.62142 -7.12938 -6.04503 -4.21556 2.21268 2.24238 3.23943 3.29365 3.32304 4.32508 4.59975 4.87524 4.96839 5.15099 5.18253 5.53963 5.65326 5.69428 5.69708 5.73216 5.85837 5.96149 5.96733 6.03670 6.14417 6.19057 6.24193 6.43168 6.43394 6.50723 6.58534 6.83229 6.89987 7.04794 7.10555 7.26744 7.32489 7.49057 7.67454 7.78169 7.86680 7.99317 8.22549 8.74202 8.97503 9.16747 9.50958 10.90307 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.033573 B = 0.005885 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.798675 B = 4757.013350 C = 5171.756154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.025 4.025 3 C -0.141 4.141 4 C -0.136 4.136 5 C -0.098 4.098 6 C -0.129 4.129 7 C -0.109 4.109 8 C -0.037 4.037 9 C 0.263 3.737 10 C -0.121 4.121 11 N -0.846 5.846 12 C -0.540 4.540 13 H 0.059 0.941 14 C 0.068 3.932 15 N -0.891 5.891 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 C -0.110 4.110 21 C -0.134 4.134 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.028 0.972 34 H 0.017 0.983 35 H 0.084 0.916 36 H 0.313 0.687 37 H 0.354 0.646 38 H 0.264 0.736 39 H 0.124 0.876 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.749 5.427 -11.036 13.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.025 4.025 3 C -0.198 4.198 4 C -0.193 4.193 5 C -0.098 4.098 6 C -0.147 4.147 7 C -0.127 4.127 8 C -0.038 4.038 9 C 0.171 3.829 10 C -0.179 4.179 11 N -0.375 5.375 12 C -0.579 4.579 13 H 0.077 0.923 14 C -0.134 4.134 15 N -0.530 5.530 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.204 1.204 20 C -0.128 4.128 21 C -0.152 4.152 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.143 0.857 33 H 0.047 0.953 34 H 0.036 0.964 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.171 0.829 38 H 0.074 0.926 39 H 0.142 0.858 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.509 5.318 -11.029 13.866 hybrid contribution 2.030 0.587 0.685 2.221 sum -4.479 5.904 -10.344 12.724 Atomic orbital electron populations 1.21867 0.94391 1.01821 1.01222 1.19393 0.95156 0.94707 0.93241 1.21929 1.01183 0.95401 1.01291 1.21868 1.01200 1.00147 0.96093 1.19514 0.99999 0.94360 0.95954 1.20827 1.01484 0.94262 0.98129 1.21138 0.97566 1.00336 0.93687 1.20453 0.93670 0.93507 0.96176 1.17285 0.92640 0.85663 0.87279 1.21678 0.95910 0.99072 1.01224 1.59404 1.53602 1.11185 1.13356 1.21954 1.04792 1.19729 1.11464 0.92306 1.24978 0.97683 0.94937 0.95818 1.69682 1.38479 1.26380 1.18482 0.86640 0.83966 0.79376 0.77908 1.20269 1.21264 1.20366 1.21253 0.99343 0.95315 0.96884 1.21049 0.99537 0.99388 0.95211 0.92650 0.93049 0.92562 0.92388 0.93062 0.92399 0.92561 0.93052 0.92641 0.87640 0.85684 0.95261 0.96434 0.89717 0.87820 0.82947 0.92599 0.85793 0.87015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.29 37.16 0.31 -1.27 16 2 C -0.02 -0.32 0.85 -155.66 -0.13 -0.45 16 3 C -0.14 -1.63 7.13 37.16 0.27 -1.37 16 4 C -0.14 -1.59 8.29 37.16 0.31 -1.28 16 5 C -0.10 -1.59 4.76 -104.63 -0.50 -2.09 16 6 C -0.13 -2.21 8.71 -39.59 -0.34 -2.56 16 7 C -0.11 -2.16 9.32 -39.59 -0.37 -2.53 16 8 C -0.04 -0.82 4.78 -104.63 -0.50 -1.32 16 9 C 0.26 6.33 0.76 -133.90 -0.10 6.23 16 10 C -0.12 -2.94 8.49 37.16 0.32 -2.62 16 11 N -0.85 -19.80 7.73 -1.14 -0.01 -19.81 16 12 C -0.54 -14.06 7.55 -34.44 -0.26 -14.32 16 13 H 0.06 1.54 6.05 -52.49 -0.32 1.22 16 14 C 0.07 1.77 5.22 -17.82 -0.09 1.68 16 15 N -0.89 -23.61 9.57 55.43 0.53 -23.08 16 16 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.11 -2.26 8.88 -39.58 -0.35 -2.61 16 21 C -0.13 -2.36 8.98 -39.58 -0.36 -2.71 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.65 7.39 -51.93 -0.38 0.27 16 25 H 0.06 0.68 7.51 -51.93 -0.39 0.29 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.68 7.51 -51.93 -0.39 0.29 16 28 H 0.06 0.66 7.39 -51.93 -0.38 0.27 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.11 1.58 7.10 -52.49 -0.37 1.20 16 32 H 0.13 2.49 7.40 -52.49 -0.39 2.10 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 2.21 6.06 -51.93 -0.31 1.90 16 36 H 0.31 7.19 8.98 -39.29 -0.35 6.84 16 37 H 0.35 8.85 7.01 -39.29 -0.28 8.57 16 38 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 39 H 0.12 2.65 6.44 -52.49 -0.34 2.31 16 40 H 0.11 1.72 5.90 -52.49 -0.31 1.42 16 LS Contribution 310.21 15.07 4.67 4.67 Total: -1.00 -26.04 310.21 -7.95 -33.98 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -6.31 Total: 15.82 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -1.81 Total: -27.24 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.52 Total: -42.88 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.04 -7.95 -33.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084396848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.368 kcal (2) G-P(sol) polarization free energy of solvation -26.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds