Wall clock time and date at job start Mon Mar 30 2020 06:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 C 1.53004 * 109.47066 * 240.00269 * 2 1 3 5 5 C 1.50696 * 109.47025 * 120.00439 * 2 1 3 6 6 C 1.38233 * 120.00456 * 59.99859 * 5 2 1 7 7 C 1.38231 * 120.00305 * 180.02562 * 6 5 2 8 8 C 1.38234 * 119.99919 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99866 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47313 * 270.00151 * 9 8 7 11 11 N 1.46900 * 109.47395 * 30.00446 * 9 8 7 12 12 C 1.50702 * 109.46869 * 150.00039 * 9 8 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 9 8 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 9 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 9 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 9 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.38229 * 120.00140 * 0.25689 * 8 7 6 21 21 C 1.38234 * 119.99767 * 240.01959 * 5 2 1 22 22 H 1.08996 * 109.47399 * 299.99846 * 1 2 3 23 23 H 1.09003 * 109.47387 * 60.00105 * 1 2 3 24 24 H 1.09002 * 109.47656 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46904 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47235 * 299.99985 * 3 2 1 27 27 H 1.08998 * 109.47004 * 60.00369 * 3 2 1 28 28 H 1.09000 * 109.46850 * 299.99977 * 4 2 1 29 29 H 1.08996 * 109.47326 * 59.99955 * 4 2 1 30 30 H 1.09000 * 109.46922 * 180.02562 * 4 2 1 31 31 H 1.07997 * 119.99723 * 359.97438 * 6 5 2 32 32 H 1.08000 * 120.00262 * 179.97438 * 7 6 5 33 33 H 1.09004 * 109.47084 * 299.99675 * 10 9 8 34 34 H 1.08994 * 109.47175 * 60.00247 * 10 9 8 35 35 H 1.09001 * 109.47192 * 180.02562 * 10 9 8 36 36 H 1.00903 * 111.00086 * 59.99217 * 11 9 8 37 37 H 1.00902 * 111.00206 * 183.95155 * 11 9 8 38 38 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 39 39 H 1.08002 * 120.00368 * 179.72782 * 20 8 7 40 40 H 1.08002 * 120.00160 * 0.02562 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.6983 -2.0339 1.4491 7 6 2.1587 -2.6855 2.5780 8 6 2.9534 -2.0137 3.4880 9 6 3.4548 -2.7238 4.7190 10 6 2.4466 -2.5468 5.8561 11 7 3.6174 -4.1543 4.4270 12 6 4.7825 -2.1409 5.1294 13 1 5.2194 -1.3364 4.5564 14 6 5.4366 -2.6305 6.2401 15 7 4.9045 -3.6099 6.9380 16 14 7.0786 -1.9027 6.7532 17 1 6.9096 -0.4565 7.0450 18 1 7.5705 -2.5992 7.9691 19 1 8.0616 -2.0742 5.6534 20 6 3.2834 -0.6889 3.2717 21 6 2.8267 -0.0386 2.1405 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 -1.7489 -1.2493 29 1 1.6767 -0.2074 -2.1393 30 1 3.1300 -0.7216 -1.2491 31 1 1.0771 -2.5586 0.7384 32 1 1.8974 -3.7193 2.7491 33 1 2.3261 -1.4853 6.0728 34 1 1.4864 -2.9684 5.5593 35 1 2.8095 -3.0600 6.7466 36 1 4.2789 -4.2978 3.6787 37 1 3.8910 -4.6634 5.2541 38 1 5.3648 -3.9546 7.7192 39 1 3.9007 -0.1628 3.9848 40 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084396848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:55 Heat of formation + Delta-G solvation = -9.675030 kcal Electronic energy + Delta-G solvation = -18338.596335 eV Core-core repulsion = 15730.611359 eV Total energy + Delta-G solvation = -2607.984977 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.74513 -38.30991 -36.08778 -33.38520 -31.85744 -30.24003 -28.89688 -28.14709 -28.01686 -27.21465 -24.11083 -22.89944 -21.15687 -19.87393 -18.25396 -17.58116 -16.54937 -15.89117 -15.87218 -15.39721 -15.06990 -14.87991 -14.62232 -14.27315 -14.04693 -13.87496 -13.42058 -13.16988 -12.98136 -12.85367 -12.65285 -12.57835 -12.47539 -12.35629 -12.19375 -12.10866 -11.74170 -11.69958 -11.57829 -11.18713 -11.01748 -10.59701 -9.56377 -9.16508 -9.02719 -8.02680 -6.26436 0.74240 0.75629 1.38203 1.40071 1.46478 2.39390 3.07792 3.17541 3.81021 3.96697 4.21539 4.26828 4.36312 4.43527 4.51484 4.59141 4.77481 4.85941 4.88107 4.96717 4.98186 5.03339 5.09174 5.09510 5.13887 5.21993 5.27031 5.32781 5.41124 5.47286 5.53052 5.57980 5.70567 5.84867 5.92329 5.94612 6.09972 6.24694 6.42740 6.76374 7.04627 7.18772 7.49139 8.88664 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.033573 B = 0.005885 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.798675 B = 4757.013350 C = 5171.756154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.026 4.026 3 C -0.142 4.142 4 C -0.135 4.135 5 C -0.087 4.087 6 C -0.124 4.124 7 C -0.118 4.118 8 C -0.066 4.066 9 C 0.258 3.742 10 C -0.111 4.111 11 N -0.836 5.836 12 C -0.553 4.553 13 H 0.050 0.950 14 C 0.028 3.972 15 N -0.906 5.906 16 Si 0.948 3.052 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.278 1.278 20 C -0.128 4.128 21 C -0.133 4.133 22 H 0.047 0.953 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.132 0.868 32 H 0.119 0.881 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.063 0.937 36 H 0.314 0.686 37 H 0.344 0.656 38 H 0.263 0.737 39 H 0.106 0.894 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.385 6.505 -13.213 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.026 4.026 3 C -0.199 4.199 4 C -0.192 4.192 5 C -0.088 4.088 6 C -0.141 4.141 7 C -0.137 4.137 8 C -0.066 4.066 9 C 0.166 3.834 10 C -0.170 4.170 11 N -0.363 5.363 12 C -0.593 4.593 13 H 0.068 0.932 14 C -0.172 4.172 15 N -0.546 5.546 16 Si 0.775 3.225 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.204 1.204 20 C -0.146 4.146 21 C -0.151 4.151 22 H 0.066 0.934 23 H 0.093 0.907 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.150 0.850 32 H 0.137 0.863 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.159 0.841 38 H 0.073 0.927 39 H 0.124 0.876 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.150 6.399 -13.216 16.331 hybrid contribution 2.176 0.286 1.290 2.546 sum -4.974 6.685 -11.925 14.548 Atomic orbital electron populations 1.21862 0.93100 1.02142 1.02071 1.19502 0.96119 0.95163 0.91814 1.21937 1.00942 0.94650 1.02335 1.21863 1.00652 1.00346 0.96325 1.19964 0.98102 0.94064 0.96626 1.21089 1.00932 0.94719 0.97407 1.21136 0.97844 1.00210 0.94467 1.20300 0.95813 0.94200 0.96336 1.17278 0.91828 0.85878 0.88402 1.21555 0.96344 0.98359 1.00706 1.59404 1.53312 1.10924 1.12709 1.22179 1.05844 1.19625 1.11611 0.93164 1.25580 1.00319 0.95373 0.95934 1.69784 1.39292 1.26946 1.18558 0.85779 0.80721 0.78584 0.77446 1.20254 1.20923 1.20358 1.21204 1.00261 0.95150 0.98031 1.21284 0.99134 1.00386 0.94247 0.93402 0.90686 0.92548 0.92838 0.90780 0.92701 0.92552 0.90675 0.93546 0.84970 0.86258 0.95772 0.95797 0.91784 0.87731 0.84110 0.92699 0.87584 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 8.29 71.98 0.60 -2.03 16 2 C -0.03 -0.58 0.85 -52.93 -0.05 -0.62 16 3 C -0.14 -2.79 7.13 71.98 0.51 -2.28 16 4 C -0.13 -2.66 8.29 71.98 0.60 -2.06 16 5 C -0.09 -2.65 4.76 -19.87 -0.09 -2.74 16 6 C -0.12 -4.00 8.71 22.27 0.19 -3.81 16 7 C -0.12 -4.64 9.32 22.27 0.21 -4.43 16 8 C -0.07 -2.92 4.78 -19.87 -0.10 -3.01 16 9 C 0.26 12.71 0.76 2.04 0.00 12.71 16 10 C -0.11 -5.57 8.49 71.98 0.61 -4.96 16 11 N -0.84 -39.90 7.73 -157.51 -1.22 -41.12 16 12 C -0.55 -29.45 7.55 25.60 0.19 -29.25 16 13 H 0.05 2.71 6.05 -2.91 -0.02 2.69 16 14 C 0.03 1.48 5.22 84.66 0.44 1.93 16 15 N -0.91 -48.81 9.57 21.45 0.21 -48.61 16 16 Si 0.95 42.86 29.54 68.60 2.03 44.88 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 20 C -0.13 -5.34 8.88 22.27 0.20 -5.14 16 21 C -0.13 -4.52 8.98 22.27 0.20 -4.32 16 22 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.06 1.10 7.39 -2.39 -0.02 1.08 16 25 H 0.05 1.10 7.51 -2.39 -0.02 1.09 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.12 7.51 -2.39 -0.02 1.10 16 28 H 0.06 1.11 7.39 -2.39 -0.02 1.09 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.13 3.55 7.10 -2.91 -0.02 3.52 16 32 H 0.12 4.74 7.40 -2.91 -0.02 4.71 16 33 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 3.44 6.06 -2.39 -0.01 3.42 16 36 H 0.31 14.70 8.98 -89.69 -0.81 13.89 16 37 H 0.34 17.59 7.01 -89.69 -0.63 16.96 16 38 H 0.26 13.71 8.31 -92.70 -0.77 12.93 16 39 H 0.11 4.70 6.44 -2.91 -0.02 4.68 16 40 H 0.13 3.88 5.90 -2.91 -0.02 3.87 16 Total: -1.00 -55.77 310.21 4.13 -51.64 By element: Atomic # 1 Polarization: 43.62 SS G_CDS: -0.40 Total: 43.22 kcal Atomic # 6 Polarization: -53.54 SS G_CDS: 3.52 Total: -50.02 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -1.01 Total: -89.72 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -55.77 4.13 -51.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084396848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.966 kcal (2) G-P(sol) polarization free energy of solvation -55.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds