Wall clock time and date at job start Mon Mar 30 2020 05:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46945 * 2 1 4 4 C 1.52998 * 109.47169 * 185.60329 * 3 2 1 5 5 N 1.46900 * 109.47411 * 186.47894 * 4 3 2 6 6 C 1.50699 * 109.47015 * 306.47508 * 4 3 2 7 7 H 1.08007 * 120.00064 * 117.97385 * 6 4 3 8 8 C 1.37870 * 120.00467 * 297.97234 * 6 4 3 9 9 N 1.31519 * 120.00153 * 192.45555 * 8 6 4 10 10 Si 1.86799 * 119.99805 * 12.45122 * 8 6 4 11 11 H 1.48500 * 109.47009 * 90.21309 * 10 8 6 12 12 H 1.48502 * 109.47234 * 210.20949 * 10 8 6 13 13 H 1.48499 * 109.47374 * 330.21168 * 10 8 6 14 14 C 1.50697 * 109.47031 * 66.47497 * 4 3 2 15 15 C 1.38263 * 120.00099 * 7.90166 * 14 4 3 16 16 C 1.38209 * 119.99838 * 179.97438 * 15 14 4 17 17 C 1.50703 * 119.99853 * 179.97438 * 16 15 14 18 18 C 1.38250 * 120.00286 * 359.97438 * 16 15 14 19 19 C 1.38214 * 120.00250 * 359.74605 * 18 16 15 20 20 C 1.38219 * 120.00177 * 187.87575 * 14 4 3 21 21 C 1.50702 * 119.99536 * 0.02562 * 20 14 4 22 22 H 1.09000 * 109.47164 * 299.99907 * 1 2 3 23 23 H 1.08998 * 109.47316 * 59.99633 * 1 2 3 24 24 H 1.09002 * 109.47211 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46707 * 240.00300 * 2 1 3 26 26 H 1.08992 * 109.46910 * 120.00254 * 2 1 3 27 27 H 1.09005 * 109.47302 * 65.60706 * 3 2 1 28 28 H 1.09004 * 109.47538 * 305.60707 * 3 2 1 29 29 H 1.00895 * 111.00379 * 77.49186 * 5 4 3 30 30 H 1.00898 * 111.00257 * 201.44886 * 5 4 3 31 31 H 0.97004 * 119.99763 * 179.97438 * 9 8 6 32 32 H 1.08001 * 119.99343 * 359.97342 * 15 14 4 33 33 H 1.09002 * 109.47180 * 89.99348 * 17 16 15 34 34 H 1.08995 * 109.47153 * 210.00178 * 17 16 15 35 35 H 1.09002 * 109.47060 * 329.99967 * 17 16 15 36 36 H 1.08004 * 119.99886 * 179.97438 * 18 16 15 37 37 H 1.08003 * 120.00552 * 180.27993 * 19 18 16 38 38 H 1.08995 * 109.47043 * 90.85208 * 21 20 14 39 39 H 1.09004 * 109.46877 * 210.84899 * 21 20 14 40 40 H 1.08996 * 109.47260 * 330.85033 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5635 1.4449 -0.1408 5 7 4.0675 2.8159 0.0144 6 6 4.1676 0.5643 0.9225 7 1 4.7391 -0.3079 0.6409 8 6 3.9908 0.8718 2.2547 9 7 4.7085 0.2604 3.1717 10 14 2.7320 2.1572 2.7575 11 1 1.4219 1.5001 2.9961 12 1 3.1820 2.8305 4.0022 13 1 2.5914 3.1627 1.6739 14 6 3.9429 0.9212 -1.5020 15 6 2.9641 0.6863 -2.4499 16 6 3.3122 0.2066 -3.6984 17 6 2.2452 -0.0500 -4.7314 18 6 4.6391 -0.0379 -3.9998 19 6 5.6182 0.2023 -3.0543 20 6 5.2694 0.6762 -1.8032 21 6 6.3363 0.9322 -0.7700 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.7609 1.9266 0.9360 28 1 1.5970 1.9846 -0.8355 29 1 4.0849 3.0870 0.9861 30 1 4.9797 2.9155 -0.4051 31 1 4.5844 0.4771 4.1090 32 1 1.9276 0.8778 -2.2145 33 1 2.0877 0.8520 -5.3228 34 1 2.5606 -0.8629 -5.3853 35 1 1.3155 -0.3245 -4.2330 36 1 4.9110 -0.4132 -4.9753 37 1 6.6552 0.0156 -3.2912 38 1 6.5039 0.0257 -0.1885 39 1 7.2621 1.2211 -1.2676 40 1 6.0145 1.7351 -0.1067 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084396855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:15 Heat of formation + Delta-G solvation = 33.225746 kcal Electronic energy + Delta-G solvation = -19208.605860 eV Core-core repulsion = 16602.481201 eV Total energy + Delta-G solvation = -2606.124660 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.59647 -36.45102 -33.73421 -32.35639 -31.64226 -29.81713 -28.76591 -27.06142 -24.91757 -24.32725 -22.67817 -21.02587 -20.46577 -18.74170 -16.38886 -16.00453 -15.18849 -15.02455 -14.42840 -13.93445 -13.69428 -13.38248 -13.11809 -13.01753 -12.79689 -12.33062 -12.22491 -12.14054 -11.89224 -11.48681 -11.34721 -11.19868 -10.94699 -10.63751 -10.53626 -10.28429 -10.21371 -10.03110 -9.77084 -9.60535 -8.72645 -8.57133 -8.10762 -7.74400 -7.32320 -6.20724 -4.17356 2.01267 2.09195 3.23788 3.36064 3.37474 4.30194 4.39548 5.12684 5.31728 5.35627 5.52118 5.59631 5.64483 5.74232 5.80804 5.84918 5.91073 6.05554 6.09985 6.13411 6.16031 6.30630 6.40259 6.50281 6.55072 6.60303 6.65741 6.69811 6.77505 6.94813 7.03330 7.10170 7.15052 7.21758 7.35811 7.46863 7.70528 7.72834 8.15080 8.51163 8.54519 8.87988 9.42092 10.91196 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022317 B = 0.010354 C = 0.008050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.358316 B = 2703.520774 C = 3477.238936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.107 4.107 4 C 0.240 3.760 5 N -0.850 5.850 6 C -0.528 4.528 7 H 0.080 0.920 8 C 0.075 3.925 9 N -0.887 5.887 10 Si 0.856 3.144 11 H -0.281 1.281 12 H -0.302 1.302 13 H -0.230 1.230 14 C -0.026 4.026 15 C -0.118 4.118 16 C -0.108 4.108 17 C -0.107 4.107 18 C -0.136 4.136 19 C -0.128 4.128 20 C -0.073 4.073 21 C -0.108 4.108 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.332 0.668 30 H 0.324 0.676 31 H 0.264 0.736 32 H 0.125 0.875 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.860 0.938 -10.300 10.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.145 4.145 4 C 0.149 3.851 5 N -0.385 5.385 6 C -0.567 4.567 7 H 0.098 0.902 8 C -0.128 4.128 9 N -0.524 5.524 10 Si 0.686 3.314 11 H -0.208 1.208 12 H -0.230 1.230 13 H -0.155 1.155 14 C -0.027 4.027 15 C -0.137 4.137 16 C -0.108 4.108 17 C -0.163 4.163 18 C -0.154 4.154 19 C -0.147 4.147 20 C -0.073 4.073 21 C -0.164 4.164 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.148 0.852 30 H 0.139 0.861 31 H 0.074 0.926 32 H 0.142 0.858 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.447 1.145 -10.528 11.137 hybrid contribution 0.050 -0.006 1.068 1.069 sum -3.397 1.139 -9.461 10.116 Atomic orbital electron populations 1.21836 0.97889 1.00486 1.00693 1.21628 0.93079 0.97760 1.03468 1.21947 0.97045 0.95668 0.99794 1.17675 0.91380 0.86292 0.89714 1.59916 1.30897 1.26107 1.21596 1.21487 1.33113 1.12656 0.89438 0.90208 1.24950 0.95251 0.96046 0.96554 1.69934 1.38319 1.43009 1.01144 0.87631 0.82528 0.83646 0.77601 1.20761 1.22986 1.15510 1.19904 0.91974 0.95683 0.95117 1.21153 0.99862 1.00296 0.92355 1.19759 0.94333 1.01347 0.95345 1.20694 0.97226 1.01094 0.97325 1.20754 0.92623 1.03180 0.98864 1.20906 0.98562 1.01444 0.93739 1.19821 0.94918 0.98199 0.94357 1.21003 0.94451 1.04032 0.96956 0.93583 0.93647 0.93503 0.91842 0.90575 0.93238 0.93537 0.85196 0.86098 0.92592 0.85762 0.91977 0.92308 0.92032 0.87370 0.87117 0.90668 0.94249 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.91 37.16 0.37 -2.16 16 2 C -0.12 -2.43 4.80 -26.73 -0.13 -2.56 16 3 C -0.11 -2.26 3.27 -26.73 -0.09 -2.35 16 4 C 0.24 5.30 0.42 -133.91 -0.06 5.24 16 5 N -0.85 -18.28 8.29 -1.14 -0.01 -18.29 16 6 C -0.53 -13.36 5.15 -34.44 -0.18 -13.54 16 7 H 0.08 2.25 6.38 -52.48 -0.33 1.91 16 8 C 0.08 2.00 5.28 -17.82 -0.09 1.91 16 9 N -0.89 -25.42 13.96 55.43 0.77 -24.65 16 10 Si 0.86 20.28 22.97 -169.99 -3.91 16.38 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.23 -5.15 4.68 56.52 0.26 -4.89 16 14 C -0.03 -0.54 4.56 -104.62 -0.48 -1.02 16 15 C -0.12 -2.21 7.08 -39.58 -0.28 -2.49 16 16 C -0.11 -1.78 5.88 -104.63 -0.62 -2.39 16 17 C -0.11 -1.36 10.01 36.01 0.36 -1.00 16 18 C -0.14 -2.19 9.70 -39.59 -0.38 -2.57 16 19 C -0.13 -2.22 9.71 -39.58 -0.38 -2.60 16 20 C -0.07 -1.42 5.43 -104.62 -0.57 -1.99 16 21 C -0.11 -2.09 8.03 36.01 0.29 -1.80 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.24 5.57 -51.93 -0.29 0.96 16 26 H 0.08 1.73 7.25 -51.93 -0.38 1.35 16 27 H 0.05 1.11 2.85 -51.93 -0.15 0.96 16 28 H 0.05 0.93 6.70 -51.93 -0.35 0.58 16 29 H 0.33 7.35 4.74 -39.29 -0.19 7.16 16 30 H 0.32 6.58 6.07 -39.29 -0.24 6.34 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.12 2.23 5.08 -52.49 -0.27 1.97 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 36 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 37 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 38 H 0.07 1.59 7.14 -51.93 -0.37 1.22 16 39 H 0.04 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.08 1.74 4.20 -51.93 -0.22 1.52 16 LS Contribution 290.58 15.07 4.38 4.38 Total: -1.00 -27.73 290.58 -6.84 -34.57 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -5.84 Total: 16.93 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: -2.23 Total: -29.32 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.76 Total: -42.94 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -3.91 Total: 16.38 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.73 -6.84 -34.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084396855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.800 kcal (2) G-P(sol) polarization free energy of solvation -27.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds