Wall clock time and date at job start Mon Mar 30 2020 05:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46945 * 2 1 4 4 C 1.52998 * 109.47169 * 185.60329 * 3 2 1 5 5 N 1.46900 * 109.47411 * 186.47894 * 4 3 2 6 6 C 1.50699 * 109.47015 * 306.47508 * 4 3 2 7 7 H 1.08007 * 120.00064 * 117.97385 * 6 4 3 8 8 C 1.37870 * 120.00467 * 297.97234 * 6 4 3 9 9 N 1.31519 * 120.00153 * 192.45555 * 8 6 4 10 10 Si 1.86799 * 119.99805 * 12.45122 * 8 6 4 11 11 H 1.48500 * 109.47009 * 90.21309 * 10 8 6 12 12 H 1.48502 * 109.47234 * 210.20949 * 10 8 6 13 13 H 1.48499 * 109.47374 * 330.21168 * 10 8 6 14 14 C 1.50697 * 109.47031 * 66.47497 * 4 3 2 15 15 C 1.38263 * 120.00099 * 7.90166 * 14 4 3 16 16 C 1.38209 * 119.99838 * 179.97438 * 15 14 4 17 17 C 1.50703 * 119.99853 * 179.97438 * 16 15 14 18 18 C 1.38250 * 120.00286 * 359.97438 * 16 15 14 19 19 C 1.38214 * 120.00250 * 359.74605 * 18 16 15 20 20 C 1.38219 * 120.00177 * 187.87575 * 14 4 3 21 21 C 1.50702 * 119.99536 * 0.02562 * 20 14 4 22 22 H 1.09000 * 109.47164 * 299.99907 * 1 2 3 23 23 H 1.08998 * 109.47316 * 59.99633 * 1 2 3 24 24 H 1.09002 * 109.47211 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46707 * 240.00300 * 2 1 3 26 26 H 1.08992 * 109.46910 * 120.00254 * 2 1 3 27 27 H 1.09005 * 109.47302 * 65.60706 * 3 2 1 28 28 H 1.09004 * 109.47538 * 305.60707 * 3 2 1 29 29 H 1.00895 * 111.00379 * 77.49186 * 5 4 3 30 30 H 1.00898 * 111.00257 * 201.44886 * 5 4 3 31 31 H 0.97004 * 119.99763 * 179.97438 * 9 8 6 32 32 H 1.08001 * 119.99343 * 359.97342 * 15 14 4 33 33 H 1.09002 * 109.47180 * 89.99348 * 17 16 15 34 34 H 1.08995 * 109.47153 * 210.00178 * 17 16 15 35 35 H 1.09002 * 109.47060 * 329.99967 * 17 16 15 36 36 H 1.08004 * 119.99886 * 179.97438 * 18 16 15 37 37 H 1.08003 * 120.00552 * 180.27993 * 19 18 16 38 38 H 1.08995 * 109.47043 * 90.85208 * 21 20 14 39 39 H 1.09004 * 109.46877 * 210.84899 * 21 20 14 40 40 H 1.08996 * 109.47260 * 330.85033 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5635 1.4449 -0.1408 5 7 4.0675 2.8159 0.0144 6 6 4.1676 0.5643 0.9225 7 1 4.7391 -0.3079 0.6409 8 6 3.9908 0.8718 2.2547 9 7 4.7085 0.2604 3.1717 10 14 2.7320 2.1572 2.7575 11 1 1.4219 1.5001 2.9961 12 1 3.1820 2.8305 4.0022 13 1 2.5914 3.1627 1.6739 14 6 3.9429 0.9212 -1.5020 15 6 2.9641 0.6863 -2.4499 16 6 3.3122 0.2066 -3.6984 17 6 2.2452 -0.0500 -4.7314 18 6 4.6391 -0.0379 -3.9998 19 6 5.6182 0.2023 -3.0543 20 6 5.2694 0.6762 -1.8032 21 6 6.3363 0.9322 -0.7700 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.7609 1.9266 0.9360 28 1 1.5970 1.9846 -0.8355 29 1 4.0849 3.0870 0.9861 30 1 4.9797 2.9155 -0.4051 31 1 4.5844 0.4771 4.1090 32 1 1.9276 0.8778 -2.2145 33 1 2.0877 0.8520 -5.3228 34 1 2.5606 -0.8629 -5.3853 35 1 1.3155 -0.3245 -4.2330 36 1 4.9110 -0.4132 -4.9753 37 1 6.6552 0.0156 -3.2912 38 1 6.5039 0.0257 -0.1885 39 1 7.2621 1.2211 -1.2676 40 1 6.0145 1.7351 -0.1067 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084396855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:15 Heat of formation + Delta-G solvation = 16.277739 kcal Electronic energy + Delta-G solvation = -19209.340781 eV Core-core repulsion = 16602.481201 eV Total energy + Delta-G solvation = -2606.859580 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.08748 -38.01930 -35.21085 -34.17990 -33.28775 -31.29029 -30.07881 -28.71961 -26.75494 -25.66263 -24.22578 -22.56241 -21.94049 -20.35048 -18.30456 -17.73699 -16.70894 -16.52373 -15.90721 -15.56798 -15.32030 -14.91598 -14.74549 -14.41404 -14.24767 -13.91160 -13.63999 -13.43731 -13.35559 -13.06383 -12.94692 -12.61317 -12.40595 -12.35534 -12.12723 -11.94060 -11.80741 -11.56670 -11.38257 -11.31738 -10.63248 -10.48521 -9.57394 -9.22254 -8.98853 -8.29896 -6.26717 0.63882 0.69985 1.30950 1.38349 1.45559 2.29928 2.97972 3.09557 3.94612 4.00524 4.11012 4.16545 4.32619 4.33260 4.45262 4.51830 4.61860 4.66844 4.80848 4.85093 4.92818 4.94537 4.95705 4.99429 5.04719 5.09694 5.18121 5.30755 5.32494 5.36820 5.47933 5.52668 5.61522 5.71668 5.78739 5.87888 6.05416 6.22642 6.37776 6.65699 6.66461 6.87447 7.34983 8.85735 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022317 B = 0.010354 C = 0.008050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.358316 B = 2703.520774 C = 3477.238936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.107 4.107 4 C 0.239 3.761 5 N -0.845 5.845 6 C -0.503 4.503 7 H 0.039 0.961 8 C 0.025 3.975 9 N -0.937 5.937 10 Si 0.910 3.090 11 H -0.285 1.285 12 H -0.311 1.311 13 H -0.207 1.207 14 C -0.054 4.054 15 C -0.130 4.130 16 C -0.105 4.105 17 C -0.105 4.105 18 C -0.133 4.133 19 C -0.130 4.130 20 C -0.099 4.099 21 C -0.099 4.099 22 H 0.041 0.959 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.326 0.674 30 H 0.330 0.670 31 H 0.261 0.739 32 H 0.130 0.870 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.143 0.857 37 H 0.133 0.867 38 H 0.043 0.957 39 H 0.067 0.933 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 1.471 -13.452 14.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.144 4.144 4 C 0.149 3.851 5 N -0.379 5.379 6 C -0.542 4.542 7 H 0.058 0.942 8 C -0.173 4.173 9 N -0.577 5.577 10 Si 0.740 3.260 11 H -0.212 1.212 12 H -0.240 1.240 13 H -0.131 1.131 14 C -0.055 4.055 15 C -0.148 4.148 16 C -0.105 4.105 17 C -0.162 4.162 18 C -0.151 4.151 19 C -0.148 4.148 20 C -0.099 4.099 21 C -0.156 4.156 22 H 0.060 0.940 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.890 1.689 -13.713 14.656 hybrid contribution 0.575 -0.255 1.908 2.009 sum -4.315 1.434 -11.805 12.651 Atomic orbital electron populations 1.21791 0.94955 1.01955 1.01666 1.21530 0.95662 0.96566 1.01686 1.21938 0.96199 0.96539 0.99771 1.17640 0.91958 0.85667 0.89878 1.59927 1.31429 1.25517 1.21029 1.21569 1.31203 1.11187 0.90277 0.94241 1.25573 0.96843 0.98131 0.96732 1.70072 1.40660 1.45643 1.01323 0.86769 0.79938 0.82013 0.77290 1.21196 1.23966 1.13087 1.19880 0.93112 0.97683 0.94829 1.21269 0.99591 1.00897 0.93069 1.20214 0.95714 0.99390 0.95203 1.20765 0.96153 1.02592 0.96662 1.21189 0.92184 1.01776 0.99916 1.21195 1.00271 1.00424 0.92882 1.19921 0.94537 0.99983 0.95492 1.20837 0.96141 1.01801 0.96819 0.94024 0.91205 0.91895 0.91624 0.94359 0.94409 0.91680 0.85863 0.85454 0.92957 0.85256 0.90381 0.90332 0.91436 0.83902 0.84926 0.93776 0.91431 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 9.91 71.98 0.71 -3.82 16 2 C -0.12 -4.57 4.80 30.59 0.15 -4.42 16 3 C -0.11 -4.41 3.27 30.59 0.10 -4.31 16 4 C 0.24 10.59 0.42 2.03 0.00 10.59 16 5 N -0.84 -36.02 8.29 -157.52 -1.31 -37.32 16 6 C -0.50 -26.46 5.15 25.60 0.13 -26.33 16 7 H 0.04 2.37 6.38 -2.91 -0.02 2.35 16 8 C 0.03 1.41 5.28 84.65 0.45 1.85 16 9 N -0.94 -56.45 13.96 21.45 0.30 -56.15 16 10 Si 0.91 43.04 22.97 68.60 1.58 44.61 16 11 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.31 -15.04 7.11 99.48 0.71 -14.33 16 13 H -0.21 -8.94 4.68 99.48 0.47 -8.47 16 14 C -0.05 -2.21 4.56 -19.86 -0.09 -2.30 16 15 C -0.13 -4.57 7.08 22.27 0.16 -4.41 16 16 C -0.11 -3.09 5.88 -19.87 -0.12 -3.21 16 17 C -0.11 -2.20 10.01 71.24 0.71 -1.48 16 18 C -0.13 -3.77 9.70 22.27 0.22 -3.56 16 19 C -0.13 -4.18 9.71 22.27 0.22 -3.97 16 20 C -0.10 -3.84 5.43 -19.86 -0.11 -3.94 16 21 C -0.10 -3.93 8.03 71.24 0.57 -3.36 16 22 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 2.52 5.57 -2.39 -0.01 2.51 16 26 H 0.04 1.76 7.25 -2.39 -0.02 1.75 16 27 H 0.04 1.64 2.85 -2.38 -0.01 1.63 16 28 H 0.06 2.44 6.70 -2.39 -0.02 2.43 16 29 H 0.33 14.37 4.74 -89.70 -0.42 13.95 16 30 H 0.33 13.41 6.07 -89.70 -0.54 12.87 16 31 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.13 4.30 5.08 -2.91 -0.01 4.28 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.35 8.09 -2.39 -0.02 1.34 16 35 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 36 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 37 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 38 H 0.04 1.98 7.14 -2.39 -0.02 1.96 16 39 H 0.07 2.21 8.09 -2.38 -0.02 2.19 16 40 H 0.06 2.78 4.20 -2.39 -0.01 2.77 16 Total: -1.00 -62.20 290.58 3.51 -58.69 By element: Atomic # 1 Polarization: 43.00 SS G_CDS: -0.16 Total: 42.84 kcal Atomic # 6 Polarization: -55.77 SS G_CDS: 3.10 Total: -52.67 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -1.01 Total: -93.47 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.58 Total: 44.61 kcal Total: -62.20 3.51 -58.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084396855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.966 kcal (2) G-P(sol) polarization free energy of solvation -62.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds