Wall clock time and date at job start Mon Mar 30 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46860 * 2 1 4 4 C 1.53003 * 109.46908 * 184.30944 * 3 2 1 5 5 N 1.46895 * 109.46781 * 305.29252 * 4 3 2 6 6 C 1.50698 * 109.47009 * 185.29399 * 4 3 2 7 7 H 1.08001 * 119.99779 * 243.81492 * 6 4 3 8 8 C 1.37870 * 120.00177 * 63.81379 * 6 4 3 9 9 N 1.31515 * 120.00007 * 192.49878 * 8 6 4 10 10 Si 1.86800 * 120.00051 * 12.49707 * 8 6 4 11 11 H 1.48499 * 109.47164 * 84.68840 * 10 8 6 12 12 H 1.48502 * 109.46831 * 204.68794 * 10 8 6 13 13 H 1.48503 * 109.47168 * 324.68409 * 10 8 6 14 14 C 1.50702 * 109.47033 * 65.29199 * 4 3 2 15 15 C 1.38252 * 120.00035 * 239.82584 * 14 4 3 16 16 C 1.38219 * 120.00298 * 179.97438 * 15 14 4 17 17 C 1.50694 * 120.00173 * 180.02562 * 16 15 14 18 18 C 1.38259 * 119.99506 * 359.81573 * 16 15 14 19 19 C 1.38215 * 119.99832 * 0.41906 * 18 16 15 20 20 C 1.38210 * 119.99816 * 59.80693 * 14 4 3 21 21 C 1.50697 * 120.00528 * 0.02562 * 20 14 4 22 22 H 1.08999 * 109.47162 * 300.00363 * 1 2 3 23 23 H 1.09000 * 109.47253 * 59.99588 * 1 2 3 24 24 H 1.08996 * 109.47293 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46859 * 240.00275 * 2 1 3 26 26 H 1.09000 * 109.47034 * 119.99905 * 2 1 3 27 27 H 1.09000 * 109.47313 * 64.30522 * 3 2 1 28 28 H 1.09006 * 109.47178 * 304.30639 * 3 2 1 29 29 H 1.00906 * 110.99623 * 179.97438 * 5 4 3 30 30 H 1.00895 * 111.00439 * 303.94978 * 5 4 3 31 31 H 0.97007 * 120.00114 * 179.97438 * 9 8 6 32 32 H 1.08002 * 120.00237 * 0.02562 * 15 14 4 33 33 H 1.09007 * 109.47361 * 90.00097 * 17 16 15 34 34 H 1.08994 * 109.47670 * 210.00204 * 17 16 15 35 35 H 1.09003 * 109.47303 * 330.00872 * 17 16 15 36 36 H 1.07997 * 119.99905 * 180.22784 * 18 16 15 37 37 H 1.08001 * 119.99597 * 179.80398 * 19 18 16 38 38 H 1.09007 * 109.46647 * 264.63344 * 21 20 14 39 39 H 1.09005 * 109.46967 * 24.62649 * 21 20 14 40 40 H 1.09000 * 109.47580 * 144.63000 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5662 1.4439 -0.1084 5 7 4.1339 0.6161 0.9641 6 6 4.0777 2.8554 0.0222 7 1 4.5890 3.3232 -0.8062 8 6 3.8930 3.5495 1.1990 9 7 4.1117 4.8457 1.2392 10 14 3.3322 2.6489 2.7364 11 1 4.5106 2.0637 3.4250 12 1 2.6496 3.6025 3.6474 13 1 2.3904 1.5645 2.3591 14 6 3.9752 0.8830 -1.4460 15 6 4.7717 -0.2454 -1.5080 16 6 5.1465 -0.7602 -2.7348 17 6 6.0141 -1.9905 -2.8024 18 6 4.7217 -0.1489 -3.8999 19 6 3.9295 0.9820 -3.8377 20 6 3.5539 1.4964 -2.6106 21 6 2.6859 2.7264 -2.5431 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7410 1.9337 0.9260 28 1 1.6150 1.9782 -0.8489 29 1 5.1416 0.6006 0.9139 30 1 3.8215 0.9333 1.8696 31 1 3.9814 5.3342 2.0671 32 1 5.1003 -0.7251 -0.5979 33 1 5.3832 -2.8791 -2.8269 34 1 6.6261 -1.9545 -3.7035 35 1 6.6604 -2.0280 -1.9254 36 1 5.0115 -0.5532 -4.8584 37 1 3.6004 1.4613 -4.7478 38 1 1.6386 2.4373 -2.6309 39 1 2.8448 3.2313 -1.5902 40 1 2.9465 3.4003 -3.3592 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084396857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:17 Heat of formation + Delta-G solvation = 28.930798 kcal Electronic energy + Delta-G solvation = -19106.092964 eV Core-core repulsion = 16499.782062 eV Total energy + Delta-G solvation = -2606.310903 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.46382 -36.51190 -33.06178 -32.85798 -31.84872 -29.65825 -28.81768 -27.05944 -25.17395 -24.30601 -22.56566 -20.79748 -20.50100 -18.63557 -16.79611 -15.93310 -15.14769 -14.94523 -14.33128 -14.07340 -13.96509 -13.35590 -13.12432 -13.00862 -12.61241 -12.23583 -12.13878 -12.04678 -11.94239 -11.56125 -11.41073 -11.23222 -10.98342 -10.70108 -10.57487 -10.43945 -10.19212 -9.98287 -9.90318 -9.55980 -8.78322 -8.72974 -8.00859 -7.70710 -7.36510 -6.28459 -4.26241 2.07752 2.17993 3.11941 3.20255 3.28712 4.19670 4.47699 4.97098 5.37385 5.42576 5.55783 5.67150 5.69776 5.71453 5.76817 5.87548 5.90024 5.93495 6.14374 6.19492 6.21539 6.41522 6.43157 6.46479 6.54459 6.55751 6.65126 6.76363 6.82831 6.96979 7.08101 7.17084 7.21999 7.28902 7.32685 7.52237 7.62191 7.80571 8.08935 8.30662 8.50358 8.80252 9.33405 10.83221 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020589 B = 0.009262 C = 0.008760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.591378 B = 3022.493265 C = 3195.536586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.118 4.118 4 C 0.244 3.756 5 N -0.844 5.844 6 C -0.540 4.540 7 H 0.082 0.918 8 C 0.077 3.923 9 N -0.882 5.882 10 Si 0.859 3.141 11 H -0.282 1.282 12 H -0.299 1.299 13 H -0.237 1.237 14 C -0.019 4.019 15 C -0.112 4.112 16 C -0.108 4.108 17 C -0.106 4.106 18 C -0.140 4.140 19 C -0.129 4.129 20 C -0.074 4.074 21 C -0.142 4.142 22 H 0.046 0.954 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.331 0.669 30 H 0.315 0.685 31 H 0.266 0.734 32 H 0.126 0.874 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.053 0.947 39 H 0.125 0.875 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.935 -9.415 -5.088 10.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.156 4.156 4 C 0.153 3.847 5 N -0.382 5.382 6 C -0.579 4.579 7 H 0.100 0.900 8 C -0.127 4.127 9 N -0.518 5.518 10 Si 0.691 3.309 11 H -0.209 1.209 12 H -0.227 1.227 13 H -0.163 1.163 14 C -0.020 4.020 15 C -0.130 4.130 16 C -0.108 4.108 17 C -0.162 4.162 18 C -0.159 4.159 19 C -0.147 4.147 20 C -0.074 4.074 21 C -0.197 4.197 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.143 0.857 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.072 0.928 39 H 0.143 0.857 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.349 -9.824 -5.296 11.405 hybrid contribution 0.296 0.607 1.138 1.324 sum -2.053 -9.216 -4.158 10.317 Atomic orbital electron populations 1.21822 0.97783 1.00227 1.01030 1.21468 0.93449 0.98618 1.01856 1.22264 0.95873 0.95166 1.02253 1.17699 0.91377 0.90272 0.85378 1.59780 1.13509 1.58923 1.06019 1.21505 1.38295 0.96927 1.01152 0.90000 1.25018 0.94255 0.94556 0.98874 1.69940 1.47828 1.06540 1.27444 0.87645 0.79916 0.79781 0.83596 1.20911 1.22713 1.16273 1.19826 0.94327 0.92949 0.94888 1.20957 0.98880 0.96508 0.96671 1.19781 0.99894 0.97599 0.93553 1.20681 0.98277 0.95434 1.01841 1.20734 1.00869 0.97269 0.96979 1.20883 0.99894 0.96971 0.96949 1.19698 0.98634 0.96960 0.92112 1.21456 0.96781 0.95189 1.06303 0.93475 0.93358 0.93853 0.92752 0.91955 0.92298 0.91061 0.85664 0.86483 0.92389 0.85608 0.92078 0.92455 0.92022 0.87536 0.87273 0.92802 0.85725 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 37.16 0.37 -2.02 16 2 C -0.12 -2.15 5.52 -26.73 -0.15 -2.30 16 3 C -0.12 -2.46 3.50 -26.73 -0.09 -2.55 16 4 C 0.24 5.34 0.34 -133.91 -0.05 5.29 16 5 N -0.84 -17.67 6.57 -1.14 -0.01 -17.68 16 6 C -0.54 -13.90 6.34 -34.44 -0.22 -14.12 16 7 H 0.08 2.35 7.21 -52.49 -0.38 1.98 16 8 C 0.08 2.07 5.36 -17.82 -0.10 1.97 16 9 N -0.88 -25.35 13.96 55.43 0.77 -24.58 16 10 Si 0.86 19.95 23.26 -169.99 -3.95 15.99 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.24 -5.16 4.64 56.52 0.26 -4.89 16 14 C -0.02 -0.40 3.66 -104.63 -0.38 -0.78 16 15 C -0.11 -2.12 8.83 -39.58 -0.35 -2.47 16 16 C -0.11 -1.82 5.88 -104.62 -0.62 -2.44 16 17 C -0.11 -1.39 10.01 36.00 0.36 -1.03 16 18 C -0.14 -2.32 9.70 -39.58 -0.38 -2.70 16 19 C -0.13 -2.27 9.72 -39.58 -0.38 -2.66 16 20 C -0.07 -1.46 5.56 -104.63 -0.58 -2.04 16 21 C -0.14 -2.76 7.84 36.00 0.28 -2.47 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 1.03 7.26 -51.93 -0.38 0.65 16 26 H 0.06 1.19 7.62 -51.93 -0.40 0.79 16 27 H 0.06 1.30 4.38 -51.93 -0.23 1.07 16 28 H 0.07 1.46 4.57 -51.93 -0.24 1.23 16 29 H 0.33 6.75 8.03 -39.29 -0.32 6.43 16 30 H 0.31 6.76 2.88 -39.29 -0.11 6.64 16 31 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.13 2.29 6.49 -52.49 -0.34 1.95 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.05 0.95 7.29 -51.93 -0.38 0.58 16 39 H 0.12 2.83 3.90 -51.93 -0.20 2.63 16 40 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 LS Contribution 295.72 15.07 4.46 4.46 Total: -1.00 -27.51 295.72 -7.06 -34.57 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -6.04 Total: 17.55 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: -2.29 Total: -30.32 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.77 Total: -42.26 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -3.95 Total: 15.99 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.51 -7.06 -34.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084396857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.502 kcal (2) G-P(sol) polarization free energy of solvation -27.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds