Wall clock time and date at job start Mon Mar 30 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46860 * 2 1 4 4 C 1.53003 * 109.46908 * 184.30944 * 3 2 1 5 5 N 1.46895 * 109.46781 * 305.29252 * 4 3 2 6 6 C 1.50698 * 109.47009 * 185.29399 * 4 3 2 7 7 H 1.08001 * 119.99779 * 243.81492 * 6 4 3 8 8 C 1.37870 * 120.00177 * 63.81379 * 6 4 3 9 9 N 1.31515 * 120.00007 * 192.49878 * 8 6 4 10 10 Si 1.86800 * 120.00051 * 12.49707 * 8 6 4 11 11 H 1.48499 * 109.47164 * 84.68840 * 10 8 6 12 12 H 1.48502 * 109.46831 * 204.68794 * 10 8 6 13 13 H 1.48503 * 109.47168 * 324.68409 * 10 8 6 14 14 C 1.50702 * 109.47033 * 65.29199 * 4 3 2 15 15 C 1.38252 * 120.00035 * 239.82584 * 14 4 3 16 16 C 1.38219 * 120.00298 * 179.97438 * 15 14 4 17 17 C 1.50694 * 120.00173 * 180.02562 * 16 15 14 18 18 C 1.38259 * 119.99506 * 359.81573 * 16 15 14 19 19 C 1.38215 * 119.99832 * 0.41906 * 18 16 15 20 20 C 1.38210 * 119.99816 * 59.80693 * 14 4 3 21 21 C 1.50697 * 120.00528 * 0.02562 * 20 14 4 22 22 H 1.08999 * 109.47162 * 300.00363 * 1 2 3 23 23 H 1.09000 * 109.47253 * 59.99588 * 1 2 3 24 24 H 1.08996 * 109.47293 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46859 * 240.00275 * 2 1 3 26 26 H 1.09000 * 109.47034 * 119.99905 * 2 1 3 27 27 H 1.09000 * 109.47313 * 64.30522 * 3 2 1 28 28 H 1.09006 * 109.47178 * 304.30639 * 3 2 1 29 29 H 1.00906 * 110.99623 * 179.97438 * 5 4 3 30 30 H 1.00895 * 111.00439 * 303.94978 * 5 4 3 31 31 H 0.97007 * 120.00114 * 179.97438 * 9 8 6 32 32 H 1.08002 * 120.00237 * 0.02562 * 15 14 4 33 33 H 1.09007 * 109.47361 * 90.00097 * 17 16 15 34 34 H 1.08994 * 109.47670 * 210.00204 * 17 16 15 35 35 H 1.09003 * 109.47303 * 330.00872 * 17 16 15 36 36 H 1.07997 * 119.99905 * 180.22784 * 18 16 15 37 37 H 1.08001 * 119.99597 * 179.80398 * 19 18 16 38 38 H 1.09007 * 109.46647 * 264.63344 * 21 20 14 39 39 H 1.09005 * 109.46967 * 24.62649 * 21 20 14 40 40 H 1.09000 * 109.47580 * 144.63000 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5662 1.4439 -0.1084 5 7 4.1339 0.6161 0.9641 6 6 4.0777 2.8554 0.0222 7 1 4.5890 3.3232 -0.8062 8 6 3.8930 3.5495 1.1990 9 7 4.1117 4.8457 1.2392 10 14 3.3322 2.6489 2.7364 11 1 4.5106 2.0637 3.4250 12 1 2.6496 3.6025 3.6474 13 1 2.3904 1.5645 2.3591 14 6 3.9752 0.8830 -1.4460 15 6 4.7717 -0.2454 -1.5080 16 6 5.1465 -0.7602 -2.7348 17 6 6.0141 -1.9905 -2.8024 18 6 4.7217 -0.1489 -3.8999 19 6 3.9295 0.9820 -3.8377 20 6 3.5539 1.4964 -2.6106 21 6 2.6859 2.7264 -2.5431 22 1 -0.3633 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7410 1.9337 0.9260 28 1 1.6150 1.9782 -0.8489 29 1 5.1416 0.6006 0.9139 30 1 3.8215 0.9333 1.8696 31 1 3.9814 5.3342 2.0671 32 1 5.1003 -0.7251 -0.5979 33 1 5.3832 -2.8791 -2.8269 34 1 6.6261 -1.9545 -3.7035 35 1 6.6604 -2.0280 -1.9254 36 1 5.0115 -0.5532 -4.8584 37 1 3.6004 1.4613 -4.7478 38 1 1.6386 2.4373 -2.6309 39 1 2.8448 3.2313 -1.5902 40 1 2.9465 3.4003 -3.3592 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084396857.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:17 Heat of formation + Delta-G solvation = 12.845865 kcal Electronic energy + Delta-G solvation = -19106.790459 eV Core-core repulsion = 16499.782062 eV Total energy + Delta-G solvation = -2607.008398 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.96536 -38.07068 -34.60179 -34.44329 -33.62172 -31.12732 -30.18767 -28.67609 -26.96895 -25.64629 -24.13037 -22.27583 -21.98927 -20.21650 -18.70298 -17.67388 -16.65584 -16.43578 -16.07027 -15.57076 -15.47414 -14.74573 -14.60290 -14.49116 -13.97799 -13.82858 -13.72498 -13.47489 -13.28392 -13.11214 -12.91801 -12.79547 -12.46122 -12.35811 -12.21943 -11.92863 -11.63192 -11.54604 -11.46953 -11.23660 -10.77945 -10.49963 -9.48405 -9.27860 -8.95548 -8.36401 -6.35600 0.67959 0.76458 1.23800 1.30119 1.39144 2.22308 2.94478 3.06273 3.90459 4.08176 4.17689 4.21938 4.32221 4.39566 4.42371 4.50106 4.56538 4.76374 4.85743 4.89869 4.93393 4.96991 5.07461 5.09139 5.11644 5.13444 5.15076 5.36777 5.38712 5.42933 5.52791 5.60471 5.67734 5.72085 5.77129 5.89119 6.09004 6.12583 6.40682 6.55786 6.65331 6.74722 7.26170 8.78812 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020589 B = 0.009262 C = 0.008760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.591378 B = 3022.493265 C = 3195.536586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.117 4.117 4 C 0.247 3.753 5 N -0.832 5.832 6 C -0.525 4.525 7 H 0.038 0.962 8 C 0.023 3.977 9 N -0.933 5.933 10 Si 0.916 3.084 11 H -0.274 1.274 12 H -0.309 1.309 13 H -0.213 1.213 14 C -0.045 4.045 15 C -0.125 4.125 16 C -0.107 4.107 17 C -0.104 4.104 18 C -0.138 4.138 19 C -0.132 4.132 20 C -0.099 4.099 21 C -0.133 4.133 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.334 0.666 30 H 0.312 0.688 31 H 0.264 0.736 32 H 0.128 0.872 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.141 0.859 37 H 0.131 0.869 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.272 -12.338 -6.084 13.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.155 4.155 4 C 0.156 3.844 5 N -0.370 5.370 6 C -0.564 4.564 7 H 0.056 0.944 8 C -0.176 4.176 9 N -0.572 5.572 10 Si 0.746 3.254 11 H -0.201 1.201 12 H -0.238 1.238 13 H -0.138 1.138 14 C -0.046 4.046 15 C -0.144 4.144 16 C -0.107 4.107 17 C -0.160 4.160 18 C -0.155 4.155 19 C -0.150 4.150 20 C -0.099 4.099 21 C -0.189 4.189 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.146 0.854 30 H 0.132 0.868 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.683 -12.780 -6.304 14.501 hybrid contribution 0.468 1.520 1.286 2.046 sum -2.215 -11.260 -5.018 12.525 Atomic orbital electron populations 1.21790 0.95536 1.01820 1.01404 1.21352 0.95399 0.96339 1.01399 1.22202 0.95122 0.96909 1.01298 1.17588 0.92042 0.88000 0.86806 1.59778 1.13733 1.57987 1.05490 1.21674 1.36569 0.98803 0.99389 0.94383 1.25738 0.94875 0.95013 1.01956 1.70087 1.50680 1.08324 1.28084 0.86702 0.80117 0.79014 0.79606 1.20081 1.23800 1.13809 1.19791 0.96154 0.94384 0.94243 1.21080 0.98992 0.96328 0.97954 1.20217 0.99333 0.98447 0.92752 1.20738 0.98164 0.94024 1.03080 1.21149 0.99558 0.96407 0.98416 1.21165 0.99632 0.97397 0.96780 1.19833 0.99713 0.97315 0.93077 1.21270 0.97901 0.95375 1.04385 0.93308 0.92862 0.91649 0.93125 0.92384 0.93792 0.91324 0.85384 0.86839 0.92661 0.85417 0.90497 0.90493 0.91617 0.84168 0.85123 0.91408 0.89503 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 9.91 71.98 0.71 -3.59 16 2 C -0.11 -3.78 5.52 30.60 0.17 -3.61 16 3 C -0.12 -4.86 3.50 30.60 0.11 -4.75 16 4 C 0.25 10.87 0.34 2.04 0.00 10.87 16 5 N -0.83 -34.18 6.57 -157.52 -1.03 -35.21 16 6 C -0.52 -28.08 6.34 25.60 0.16 -27.91 16 7 H 0.04 2.32 7.21 -2.91 -0.02 2.30 16 8 C 0.02 1.29 5.36 84.65 0.45 1.75 16 9 N -0.93 -56.20 13.96 21.44 0.30 -55.90 16 10 Si 0.92 41.92 23.26 68.60 1.60 43.52 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.31 -14.61 7.11 99.48 0.71 -13.90 16 13 H -0.21 -8.89 4.64 99.48 0.46 -8.43 16 14 C -0.05 -1.85 3.66 -19.87 -0.07 -1.93 16 15 C -0.13 -4.56 8.83 22.27 0.20 -4.37 16 16 C -0.11 -3.31 5.88 -19.87 -0.12 -3.42 16 17 C -0.10 -2.32 10.01 71.23 0.71 -1.60 16 18 C -0.14 -4.07 9.70 22.27 0.22 -3.86 16 19 C -0.13 -4.37 9.72 22.27 0.22 -4.15 16 20 C -0.10 -3.89 5.56 -19.87 -0.11 -4.00 16 21 C -0.13 -5.27 7.84 71.24 0.56 -4.72 16 22 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.05 1.82 7.26 -2.39 -0.02 1.80 16 26 H 0.06 2.08 7.62 -2.39 -0.02 2.06 16 27 H 0.04 1.92 4.38 -2.39 -0.01 1.91 16 28 H 0.07 2.84 4.57 -2.38 -0.01 2.83 16 29 H 0.33 13.42 8.03 -89.69 -0.72 12.70 16 30 H 0.31 12.98 2.88 -89.70 -0.26 12.72 16 31 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 32 H 0.13 4.48 6.49 -2.91 -0.02 4.46 16 33 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 35 H 0.06 1.43 8.09 -2.39 -0.02 1.41 16 36 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 37 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 38 H 0.07 2.40 7.29 -2.38 -0.02 2.38 16 39 H 0.09 4.13 3.90 -2.38 -0.01 4.12 16 40 H 0.05 2.00 8.12 -2.39 -0.02 1.98 16 Total: -1.00 -61.32 295.72 3.89 -57.43 By element: Atomic # 1 Polarization: 45.64 SS G_CDS: -0.18 Total: 45.46 kcal Atomic # 6 Polarization: -58.50 SS G_CDS: 3.21 Total: -55.29 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -0.74 Total: -91.11 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.60 Total: 43.52 kcal Total: -61.32 3.89 -57.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084396857.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.275 kcal (2) G-P(sol) polarization free energy of solvation -61.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds