Wall clock time and date at job start Mon Mar 30 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47166 * 2 1 4 4 C 1.52997 * 109.47614 * 119.99976 * 2 1 3 5 5 H 1.09006 * 109.46996 * 295.26904 * 4 2 1 6 6 C 1.50699 * 109.47113 * 55.26598 * 4 2 1 7 7 H 1.08006 * 120.00048 * 35.01930 * 6 4 2 8 8 C 1.37880 * 120.00284 * 215.02040 * 6 4 2 9 9 N 1.31513 * 119.99727 * 5.02988 * 8 6 4 10 10 Si 1.86793 * 120.00183 * 185.02132 * 8 6 4 11 11 H 1.48499 * 109.47283 * 60.00077 * 10 8 6 12 12 H 1.48501 * 109.47444 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47423 * 300.00298 * 10 8 6 14 14 C 1.50697 * 109.47870 * 175.27026 * 4 2 1 15 15 C 1.38278 * 119.93032 * 119.99608 * 14 4 2 16 16 C 1.38099 * 120.07752 * 179.97438 * 15 14 4 17 17 C 1.38915 * 119.92421 * 0.02562 * 16 15 14 18 18 N 1.39675 * 120.07415 * 179.97438 * 17 16 15 19 19 C 1.46504 * 119.99977 * 354.20582 * 18 17 16 20 20 C 1.46497 * 119.99989 * 173.92134 * 18 17 16 21 21 C 1.38904 * 119.85148 * 0.25215 * 17 16 15 22 22 C 1.38106 * 119.92152 * 359.49432 * 21 17 16 23 23 H 1.08998 * 109.47013 * 304.85533 * 1 2 3 24 24 H 1.08995 * 109.47349 * 64.85665 * 1 2 3 25 25 H 1.09004 * 109.47095 * 184.86002 * 1 2 3 26 26 H 1.09004 * 109.47364 * 240.00145 * 2 1 3 27 27 H 1.09000 * 109.47214 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47018 * 300.00065 * 3 2 1 29 29 H 1.08993 * 109.47154 * 59.99409 * 3 2 1 30 30 H 0.97005 * 120.00073 * 179.97438 * 9 8 6 31 31 H 1.08010 * 119.96048 * 359.95978 * 15 14 4 32 32 H 1.07998 * 120.03922 * 179.97438 * 16 15 14 33 33 H 1.08992 * 109.47581 * 89.99713 * 19 18 17 34 34 H 1.09004 * 109.46986 * 210.00099 * 19 18 17 35 35 H 1.08998 * 109.46883 * 329.98987 * 19 18 17 36 36 H 1.08997 * 109.47118 * 5.03574 * 20 18 17 37 37 H 1.08999 * 109.46834 * 125.02707 * 20 18 17 38 38 H 1.08994 * 109.47489 * 245.02703 * 20 18 17 39 39 H 1.08002 * 120.03994 * 179.72680 * 21 17 16 40 40 H 1.08002 * 119.96525 * 180.24941 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.7476 -0.1607 2.1372 6 6 1.4443 -2.1041 1.3093 7 1 1.2688 -2.6566 0.3979 8 6 1.1234 -2.6643 2.5276 9 7 1.2441 -1.9560 3.6291 10 14 0.5169 -4.4289 2.6136 11 1 1.5556 -5.3367 2.0640 12 1 0.2417 -4.7895 4.0276 13 1 -0.7294 -4.5634 1.8174 14 6 3.5425 -0.8235 1.1921 15 6 4.3116 -0.2455 2.1852 16 6 5.6886 -0.3378 2.1362 17 6 6.3011 -1.0119 1.0872 18 7 7.6936 -1.1068 1.0342 19 6 8.5144 -0.3894 2.0130 20 6 8.3331 -1.9286 0.0038 21 6 5.5257 -1.5864 0.0881 22 6 4.1489 -1.4948 0.1461 23 1 -0.3633 0.5873 0.8433 24 1 -0.3634 0.4366 -0.9302 25 1 -0.3633 -1.0240 0.0871 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.0179 -2.3499 4.4863 31 1 3.8348 0.2790 3.0002 32 1 6.2888 0.1142 2.9120 33 1 8.6862 -1.0269 2.8801 34 1 9.4706 -0.1251 1.5612 35 1 7.9973 0.5178 2.3256 36 1 7.5740 -2.3123 -0.6778 37 1 9.0478 -1.3222 -0.5527 38 1 8.8533 -2.7624 0.4751 39 1 5.9988 -2.1074 -0.7311 40 1 3.5452 -1.9447 -0.6282 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084396882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:40 Heat of formation + Delta-G solvation = 18.948293 kcal Electronic energy + Delta-G solvation = -18291.270805 eV Core-core repulsion = 15684.527029 eV Total energy + Delta-G solvation = -2606.743776 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.98064 -36.66826 -34.56085 -32.21902 -30.37384 -29.68195 -27.80352 -26.93355 -26.00649 -24.10372 -22.43863 -21.55848 -19.87471 -18.50472 -16.84704 -16.33855 -15.09925 -14.77673 -14.57514 -14.38121 -13.78673 -13.26753 -13.01259 -12.93083 -12.85795 -12.40241 -12.07906 -11.72642 -11.64900 -11.55636 -11.50151 -11.30278 -11.06203 -10.85031 -10.54153 -10.16271 -10.03963 -9.99116 -9.70448 -9.30952 -8.81226 -8.62166 -8.38628 -7.98470 -6.47324 -5.94828 -3.96269 2.37572 2.60336 3.35254 3.39899 3.42910 3.57036 4.47648 4.86326 5.19506 5.30136 5.38239 5.45916 5.64412 5.68353 5.78795 5.88134 5.94643 5.99550 6.08013 6.14741 6.32016 6.33686 6.46143 6.61063 6.65566 6.75230 6.78876 6.89896 6.93727 7.03359 7.18905 7.33343 7.42778 7.61029 7.73945 7.77469 7.79473 7.90794 8.12334 8.25359 8.50406 9.09372 9.64323 11.12290 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019872 B = 0.007339 C = 0.006216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.682884 B = 3814.320998 C = 4503.687911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.083 4.083 3 C -0.143 4.143 4 C 0.073 3.927 5 H 0.065 0.935 6 C -0.498 4.498 7 H 0.053 0.947 8 C 0.067 3.933 9 N -0.888 5.888 10 Si 0.884 3.116 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C -0.062 4.062 15 C -0.079 4.079 16 C -0.196 4.196 17 C 0.174 3.826 18 N -0.649 5.649 19 C 0.103 3.897 20 C 0.097 3.903 21 C -0.201 4.201 22 C -0.074 4.074 23 H 0.042 0.958 24 H 0.024 0.976 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.260 0.740 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.038 0.962 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.041 0.959 39 H 0.108 0.892 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.712 3.489 -5.168 11.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.102 4.102 3 C -0.200 4.200 4 C 0.054 3.946 5 H 0.083 0.917 6 C -0.536 4.536 7 H 0.072 0.928 8 C -0.135 4.135 9 N -0.526 5.526 10 Si 0.712 3.288 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.064 4.064 15 C -0.098 4.098 16 C -0.218 4.218 17 C 0.077 3.923 18 N -0.365 5.365 19 C -0.041 4.041 20 C -0.046 4.046 21 C -0.223 4.223 22 C -0.092 4.092 23 H 0.061 0.939 24 H 0.043 0.957 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.126 0.874 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.840 3.471 -4.964 11.555 hybrid contribution -0.108 -1.190 0.285 1.228 sum 9.732 2.281 -4.680 11.037 Atomic orbital electron populations 1.21672 0.96162 1.02367 0.98410 1.21170 0.95188 0.94048 0.99764 1.21869 1.00536 0.97774 0.99836 1.18034 0.86201 0.96115 0.94241 0.91703 1.20926 1.40267 1.00242 0.92177 0.92845 1.24926 0.95271 0.97231 0.96031 1.69897 1.48699 1.36022 0.97994 0.86784 0.79215 0.85889 0.76886 1.20323 1.21437 1.20297 1.20505 0.98425 0.94758 0.92742 1.20864 0.92034 0.98667 0.98236 1.20529 0.95175 1.06953 0.99124 1.17617 0.82063 0.97580 0.95051 1.46038 1.02627 1.53858 1.34026 1.21424 0.94451 0.96347 0.91859 1.21527 0.97758 0.94117 0.91241 1.20574 0.94205 1.07731 0.99762 1.20707 0.92553 0.97496 0.98467 0.93864 0.95651 0.91430 0.93201 0.93356 0.94680 0.93468 0.93002 0.86906 0.87625 0.94356 0.92583 0.91676 0.90513 0.93681 0.94049 0.87432 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.98 37.16 0.33 -2.24 16 2 C -0.08 -1.72 2.39 -90.62 -0.22 -1.93 16 3 C -0.14 -2.62 9.00 37.16 0.33 -2.28 16 4 C 0.07 1.74 1.71 -92.93 -0.16 1.58 16 5 H 0.06 1.74 6.97 -51.93 -0.36 1.38 16 6 C -0.50 -13.13 6.36 -34.44 -0.22 -13.35 16 7 H 0.05 1.40 7.82 -52.48 -0.41 0.99 16 8 C 0.07 1.85 5.45 -17.82 -0.10 1.75 16 9 N -0.89 -25.34 12.77 55.43 0.71 -24.64 16 10 Si 0.88 21.37 29.54 -169.99 -5.02 16.35 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C -0.06 -1.41 3.74 -104.59 -0.39 -1.80 16 15 C -0.08 -1.72 9.66 -39.62 -0.38 -2.10 16 16 C -0.20 -3.79 9.16 -39.38 -0.36 -4.15 16 17 C 0.17 3.23 6.53 -83.79 -0.55 2.68 16 18 N -0.65 -9.91 3.41 -187.56 -0.64 -10.55 16 19 C 0.10 1.27 10.10 59.85 0.60 1.87 16 20 C 0.10 1.19 10.63 59.85 0.64 1.83 16 21 C -0.20 -3.80 9.31 -39.38 -0.37 -4.17 16 22 C -0.07 -1.55 8.75 -39.61 -0.35 -1.89 16 23 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 1.45 6.90 -51.93 -0.36 1.09 16 26 H 0.05 1.02 7.23 -51.93 -0.38 0.64 16 27 H 0.05 0.89 7.37 -51.93 -0.38 0.51 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.11 2.47 7.94 -52.48 -0.42 2.05 16 32 H 0.11 1.81 6.31 -52.49 -0.33 1.48 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 35 H 0.06 0.80 6.46 -51.93 -0.34 0.47 16 36 H 0.08 0.95 5.32 -51.93 -0.28 0.67 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.11 1.76 5.75 -52.49 -0.30 1.46 16 40 H 0.11 2.30 7.54 -52.49 -0.40 1.90 16 LS Contribution 317.78 15.07 4.79 4.79 Total: -1.00 -28.77 317.78 -7.80 -36.57 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.46 Total: 1.68 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -1.18 Total: -24.20 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.07 Total: -35.19 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.77 -7.80 -36.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084396882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.514 kcal (2) G-P(sol) polarization free energy of solvation -28.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds