Wall clock time and date at job start Mon Mar 30 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47166 * 2 1 4 4 C 1.52997 * 109.47614 * 119.99976 * 2 1 3 5 5 H 1.09006 * 109.46996 * 295.26904 * 4 2 1 6 6 C 1.50699 * 109.47113 * 55.26598 * 4 2 1 7 7 H 1.08006 * 120.00048 * 35.01930 * 6 4 2 8 8 C 1.37880 * 120.00284 * 215.02040 * 6 4 2 9 9 N 1.31513 * 119.99727 * 5.02988 * 8 6 4 10 10 Si 1.86793 * 120.00183 * 185.02132 * 8 6 4 11 11 H 1.48499 * 109.47283 * 60.00077 * 10 8 6 12 12 H 1.48501 * 109.47444 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47423 * 300.00298 * 10 8 6 14 14 C 1.50697 * 109.47870 * 175.27026 * 4 2 1 15 15 C 1.38278 * 119.93032 * 119.99608 * 14 4 2 16 16 C 1.38099 * 120.07752 * 179.97438 * 15 14 4 17 17 C 1.38915 * 119.92421 * 0.02562 * 16 15 14 18 18 N 1.39675 * 120.07415 * 179.97438 * 17 16 15 19 19 C 1.46504 * 119.99977 * 354.20582 * 18 17 16 20 20 C 1.46497 * 119.99989 * 173.92134 * 18 17 16 21 21 C 1.38904 * 119.85148 * 0.25215 * 17 16 15 22 22 C 1.38106 * 119.92152 * 359.49432 * 21 17 16 23 23 H 1.08998 * 109.47013 * 304.85533 * 1 2 3 24 24 H 1.08995 * 109.47349 * 64.85665 * 1 2 3 25 25 H 1.09004 * 109.47095 * 184.86002 * 1 2 3 26 26 H 1.09004 * 109.47364 * 240.00145 * 2 1 3 27 27 H 1.09000 * 109.47214 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47018 * 300.00065 * 3 2 1 29 29 H 1.08993 * 109.47154 * 59.99409 * 3 2 1 30 30 H 0.97005 * 120.00073 * 179.97438 * 9 8 6 31 31 H 1.08010 * 119.96048 * 359.95978 * 15 14 4 32 32 H 1.07998 * 120.03922 * 179.97438 * 16 15 14 33 33 H 1.08992 * 109.47581 * 89.99713 * 19 18 17 34 34 H 1.09004 * 109.46986 * 210.00099 * 19 18 17 35 35 H 1.08998 * 109.46883 * 329.98987 * 19 18 17 36 36 H 1.08997 * 109.47118 * 5.03574 * 20 18 17 37 37 H 1.08999 * 109.46834 * 125.02707 * 20 18 17 38 38 H 1.08994 * 109.47489 * 245.02703 * 20 18 17 39 39 H 1.08002 * 120.03994 * 179.72680 * 21 17 16 40 40 H 1.08002 * 119.96525 * 180.24941 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.7476 -0.1607 2.1372 6 6 1.4443 -2.1041 1.3093 7 1 1.2688 -2.6566 0.3979 8 6 1.1234 -2.6643 2.5276 9 7 1.2441 -1.9560 3.6291 10 14 0.5169 -4.4289 2.6136 11 1 1.5556 -5.3367 2.0640 12 1 0.2417 -4.7895 4.0276 13 1 -0.7294 -4.5634 1.8174 14 6 3.5425 -0.8235 1.1921 15 6 4.3116 -0.2455 2.1852 16 6 5.6886 -0.3378 2.1362 17 6 6.3011 -1.0119 1.0872 18 7 7.6936 -1.1068 1.0342 19 6 8.5144 -0.3894 2.0130 20 6 8.3331 -1.9286 0.0038 21 6 5.5257 -1.5864 0.0881 22 6 4.1489 -1.4948 0.1461 23 1 -0.3633 0.5873 0.8433 24 1 -0.3634 0.4366 -0.9302 25 1 -0.3633 -1.0240 0.0871 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.0179 -2.3499 4.4863 31 1 3.8348 0.2790 3.0002 32 1 6.2888 0.1142 2.9120 33 1 8.6862 -1.0269 2.8801 34 1 9.4706 -0.1251 1.5612 35 1 7.9973 0.5178 2.3256 36 1 7.5740 -2.3123 -0.6778 37 1 9.0478 -1.3222 -0.5527 38 1 8.8533 -2.7624 0.4751 39 1 5.9988 -2.1074 -0.7311 40 1 3.5452 -1.9447 -0.6282 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084396882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:40 Heat of formation + Delta-G solvation = 4.988352 kcal Electronic energy + Delta-G solvation = -18291.876154 eV Core-core repulsion = 15684.527029 eV Total energy + Delta-G solvation = -2607.349125 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.47981 -38.17475 -36.03516 -34.21156 -31.85243 -31.24073 -28.89519 -28.66073 -27.55953 -25.70792 -24.03665 -23.09254 -21.36139 -20.20645 -18.40219 -18.12027 -16.54339 -16.39812 -15.95583 -15.80741 -15.32668 -14.86168 -14.76774 -14.39082 -14.26125 -13.67960 -13.41549 -13.30349 -13.11533 -12.96091 -12.86360 -12.75299 -12.70655 -12.68096 -12.37150 -11.85806 -11.82993 -11.50597 -11.35815 -11.01230 -10.67986 -10.44539 -10.13612 -9.56203 -8.09852 -7.79323 -6.07422 0.78855 1.03655 1.41801 1.43218 1.49144 2.42629 2.47260 3.20797 3.36429 4.07665 4.17277 4.33725 4.37129 4.50951 4.52631 4.57013 4.59318 4.70352 4.81082 4.83760 4.92935 4.94797 5.00767 5.02753 5.14960 5.15488 5.22866 5.29314 5.37171 5.48658 5.57188 5.64408 5.74600 5.79739 5.92152 6.07240 6.20787 6.30284 6.56061 6.58101 6.78942 7.05663 7.54679 9.04624 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019872 B = 0.007339 C = 0.006216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.682884 B = 3814.320998 C = 4503.687911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 C -0.133 4.133 4 C 0.076 3.924 5 H 0.025 0.975 6 C -0.497 4.497 7 H 0.051 0.949 8 C 0.016 3.984 9 N -0.922 5.922 10 Si 0.938 3.062 11 H -0.276 1.276 12 H -0.290 1.290 13 H -0.268 1.268 14 C -0.088 4.088 15 C -0.096 4.096 16 C -0.201 4.201 17 C 0.181 3.819 18 N -0.652 5.652 19 C 0.096 3.904 20 C 0.090 3.910 21 C -0.202 4.202 22 C -0.083 4.083 23 H 0.032 0.968 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.256 0.744 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.136 0.864 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.672 3.207 -6.767 13.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.101 4.101 3 C -0.190 4.190 4 C 0.057 3.943 5 H 0.044 0.956 6 C -0.536 4.536 7 H 0.069 0.931 8 C -0.182 4.182 9 N -0.562 5.562 10 Si 0.765 3.235 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.193 1.193 14 C -0.090 4.090 15 C -0.115 4.115 16 C -0.223 4.223 17 C 0.081 3.919 18 N -0.367 5.367 19 C -0.047 4.047 20 C -0.052 4.052 21 C -0.224 4.224 22 C -0.102 4.102 23 H 0.051 0.949 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.143 0.857 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.154 0.846 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.835 3.184 -6.583 13.912 hybrid contribution -0.574 -1.069 0.737 1.420 sum 11.261 2.115 -5.846 12.863 Atomic orbital electron populations 1.21607 0.95743 1.01102 0.99659 1.21123 0.95539 0.95273 0.98172 1.21747 1.00204 0.96252 1.00813 1.17893 0.87607 0.94705 0.94099 0.95619 1.21229 1.39254 1.01250 0.91818 0.93110 1.25601 0.96135 1.00519 0.95967 1.70041 1.50581 1.37343 0.98232 0.85919 0.78973 0.81923 0.76717 1.20205 1.21572 1.19342 1.20341 0.97510 0.96950 0.94241 1.20828 0.93354 0.99494 0.97854 1.20674 0.94290 1.07220 1.00145 1.17747 0.84023 0.96052 0.94094 1.46360 1.01467 1.53898 1.34959 1.21628 0.95266 0.96027 0.91779 1.21748 0.98062 0.94632 0.90795 1.20829 0.93397 1.07490 1.00657 1.20751 0.93762 0.97591 0.98057 0.94858 0.92439 0.93547 0.92812 0.93765 0.91935 0.94131 0.93454 0.88671 0.85729 0.93963 0.89559 0.91944 0.90759 0.91164 0.92747 0.84639 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 8.98 71.98 0.65 -4.28 16 2 C -0.08 -3.42 2.39 -10.80 -0.03 -3.44 16 3 C -0.13 -4.79 9.00 71.98 0.65 -4.15 16 4 C 0.08 3.75 1.71 -12.29 -0.02 3.73 16 5 H 0.03 1.45 6.97 -2.38 -0.02 1.43 16 6 C -0.50 -26.86 6.36 25.60 0.16 -26.70 16 7 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 8 C 0.02 0.89 5.45 84.66 0.46 1.35 16 9 N -0.92 -54.68 12.77 21.45 0.27 -54.40 16 10 Si 0.94 44.56 29.54 68.60 2.03 46.59 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 14 C -0.09 -4.08 3.74 -19.84 -0.07 -4.15 16 15 C -0.10 -4.31 9.66 22.25 0.21 -4.09 16 16 C -0.20 -7.67 9.16 22.40 0.21 -7.46 16 17 C 0.18 6.34 6.53 38.21 0.25 6.59 16 18 N -0.65 -17.78 3.41 -747.30 -2.55 -20.33 16 19 C 0.10 2.05 10.10 127.77 1.29 3.34 16 20 C 0.09 1.86 10.63 127.77 1.36 3.21 16 21 C -0.20 -7.28 9.31 22.40 0.21 -7.07 16 22 C -0.08 -3.46 8.75 22.25 0.19 -3.26 16 23 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.05 2.01 6.90 -2.38 -0.02 1.99 16 26 H 0.05 2.17 7.23 -2.38 -0.02 2.16 16 27 H 0.04 1.61 7.37 -2.39 -0.02 1.59 16 28 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 31 H 0.10 4.45 7.94 -2.91 -0.02 4.43 16 32 H 0.12 4.15 6.31 -2.91 -0.02 4.13 16 33 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 1.34 8.07 -2.39 -0.02 1.32 16 35 H 0.06 1.37 6.46 -2.39 -0.02 1.36 16 36 H 0.07 1.56 5.32 -2.39 -0.01 1.55 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.14 4.04 5.75 -2.91 -0.02 4.03 16 40 H 0.11 4.55 7.54 -2.91 -0.02 4.52 16 Total: -1.00 -62.99 317.78 6.27 -56.73 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 1.00 Total: 17.81 kcal Atomic # 6 Polarization: -51.90 SS G_CDS: 5.52 Total: -46.39 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -2.27 Total: -74.74 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -62.99 6.27 -56.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084396882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.716 kcal (2) G-P(sol) polarization free energy of solvation -62.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds