Wall clock time and date at job start Mon Mar 30 2020 06:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47183 * 2 1 4 4 C 1.53003 * 109.46942 * 120.00062 * 2 1 3 5 5 H 1.08996 * 109.47184 * 301.35057 * 4 2 1 6 6 C 1.50706 * 109.46872 * 181.35456 * 4 2 1 7 7 H 1.08000 * 119.99944 * 332.71940 * 6 4 2 8 8 C 1.37875 * 119.99687 * 152.72783 * 6 4 2 9 9 N 1.31517 * 120.00241 * 6.36707 * 8 6 4 10 10 Si 1.86799 * 119.99845 * 186.37055 * 8 6 4 11 11 H 1.48491 * 109.47429 * 270.00010 * 10 8 6 12 12 H 1.48506 * 109.47282 * 29.99908 * 10 8 6 13 13 H 1.48502 * 109.47340 * 149.99647 * 10 8 6 14 14 C 1.50697 * 109.47232 * 61.35320 * 4 2 1 15 15 C 1.38291 * 119.92603 * 59.72686 * 14 4 2 16 16 C 1.38096 * 120.07446 * 179.72447 * 15 14 4 17 17 C 1.38909 * 119.92674 * 0.54937 * 16 15 14 18 18 N 1.39670 * 120.07637 * 179.74560 * 17 16 15 19 19 C 1.46502 * 120.00008 * 179.97438 * 18 17 16 20 20 C 1.46497 * 120.00422 * 359.97438 * 18 17 16 21 21 C 1.38916 * 119.84865 * 359.72238 * 17 16 15 22 22 C 1.38102 * 119.92604 * 0.02562 * 21 17 16 23 23 H 1.09006 * 109.46644 * 60.00102 * 1 2 3 24 24 H 1.09000 * 109.47090 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47097 * 300.00155 * 1 2 3 26 26 H 1.09000 * 109.47097 * 239.99845 * 2 1 3 27 27 H 1.08998 * 109.47041 * 185.46471 * 3 2 1 28 28 H 1.09002 * 109.47452 * 305.46544 * 3 2 1 29 29 H 1.08999 * 109.47262 * 65.46885 * 3 2 1 30 30 H 0.97000 * 119.99730 * 354.66169 * 9 8 6 31 31 H 1.08002 * 119.95801 * 359.97438 * 15 14 4 32 32 H 1.08008 * 120.03924 * 180.26852 * 16 15 14 33 33 H 1.08997 * 109.46927 * 90.00481 * 19 18 17 34 34 H 1.09007 * 109.47148 * 210.00196 * 19 18 17 35 35 H 1.09002 * 109.47216 * 330.00009 * 19 18 17 36 36 H 1.09001 * 109.47582 * 89.99204 * 20 18 17 37 37 H 1.09002 * 109.47814 * 209.99838 * 20 18 17 38 38 H 1.09006 * 109.46804 * 329.99894 * 20 18 17 39 39 H 1.08002 * 120.03317 * 179.97438 * 21 17 16 40 40 H 1.07995 * 119.96369 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6570 -0.2217 2.1391 6 6 3.5467 -0.6923 1.2662 7 1 4.0960 -0.6300 0.3384 8 6 4.2237 -0.7453 2.4661 9 7 3.5634 -0.9471 3.5854 10 14 6.0790 -0.5306 2.5019 11 1 6.7336 -1.8557 2.3583 12 1 6.4969 0.3517 1.3828 13 1 6.4815 0.0831 3.7929 14 6 1.5652 -2.1514 1.2326 15 6 1.9234 -2.9851 0.1890 16 6 1.4948 -4.2978 0.1735 17 6 0.6935 -4.7774 1.2019 18 7 0.2539 -6.1030 1.1867 19 6 -0.5906 -6.6071 2.2725 20 6 0.6372 -6.9893 0.0850 21 6 0.3309 -3.9356 2.2458 22 6 0.7673 -2.6254 2.2578 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1256 1.4440 -0.0979 28 1 1.5990 1.9839 -0.8370 29 1 1.7589 1.9273 0.9349 30 1 2.5940 -0.9812 3.5772 31 1 2.5424 -2.6103 -0.6127 32 1 1.7785 -4.9497 -0.6396 33 1 -1.6392 -6.4480 2.0210 34 1 -0.4078 -7.6729 2.4101 35 1 -0.3533 -6.0758 3.1941 36 1 1.5715 -7.4934 0.3324 37 1 -0.1452 -7.7315 -0.0734 38 1 0.7706 -6.4024 -0.8238 39 1 -0.2923 -4.3052 3.0467 40 1 0.4862 -1.9706 3.0692 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084396884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:43 Heat of formation + Delta-G solvation = 13.993898 kcal Electronic energy + Delta-G solvation = -18377.929631 eV Core-core repulsion = 15770.971016 eV Total energy + Delta-G solvation = -2606.958615 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.06523 -36.82888 -34.64762 -32.38109 -30.41389 -29.61395 -27.84683 -26.74033 -26.07336 -23.98101 -22.45326 -21.60140 -19.97458 -18.84439 -16.91718 -16.62028 -15.23716 -14.78121 -14.54511 -13.93751 -13.72225 -13.60628 -13.06245 -13.01222 -12.85203 -12.52292 -12.37278 -11.79896 -11.73327 -11.63934 -11.56675 -11.42071 -11.00119 -10.77196 -10.42092 -10.19961 -10.09312 -10.03822 -9.75241 -9.36131 -8.97171 -8.43623 -8.19247 -8.04535 -6.53070 -6.22782 -3.94889 2.31269 2.54708 3.47574 3.50400 3.53125 3.65275 4.58407 4.80365 5.19013 5.25612 5.39902 5.46231 5.61338 5.66561 5.75443 5.81656 5.87168 5.89995 5.94607 6.00874 6.22575 6.28476 6.35842 6.49666 6.57389 6.60734 6.67243 6.75487 6.83271 6.92835 7.05706 7.17251 7.25180 7.41291 7.59131 7.68179 7.74942 7.90084 8.16447 8.33427 8.53160 8.97287 9.74758 11.13076 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020133 B = 0.007417 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.430171 B = 3774.348836 C = 4473.287928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 C -0.127 4.127 4 C 0.069 3.931 5 H 0.036 0.964 6 C -0.579 4.579 7 H 0.049 0.951 8 C 0.022 3.978 9 N -0.910 5.910 10 Si 1.064 2.936 11 H -0.290 1.290 12 H -0.289 1.289 13 H -0.286 1.286 14 C -0.067 4.067 15 C -0.068 4.068 16 C -0.197 4.197 17 C 0.176 3.824 18 N -0.649 5.649 19 C 0.101 3.899 20 C 0.102 3.898 21 C -0.193 4.193 22 C -0.086 4.086 23 H 0.037 0.963 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.028 0.972 29 H 0.043 0.957 30 H 0.272 0.728 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.039 0.961 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.107 0.893 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.118 -6.921 -5.459 11.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 C -0.184 4.184 4 C 0.051 3.949 5 H 0.054 0.946 6 C -0.617 4.617 7 H 0.068 0.932 8 C -0.183 4.183 9 N -0.546 5.546 10 Si 0.893 3.107 11 H -0.217 1.217 12 H -0.215 1.215 13 H -0.212 1.212 14 C -0.070 4.070 15 C -0.087 4.087 16 C -0.219 4.219 17 C 0.079 3.921 18 N -0.365 5.365 19 C -0.042 4.042 20 C -0.042 4.042 21 C -0.216 4.216 22 C -0.105 4.105 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.125 0.875 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.850 -7.096 -4.448 10.216 hybrid contribution -1.238 -0.249 -0.896 1.548 sum -7.088 -7.345 -5.344 11.522 Atomic orbital electron populations 1.21886 0.97545 1.00823 0.99888 1.21077 0.92981 0.96091 0.99572 1.21641 1.01709 0.95880 0.99214 1.18039 0.96153 0.87200 0.93535 0.94609 1.21809 0.90160 1.54917 0.94775 0.93249 1.25690 1.06451 0.93605 0.92540 1.70729 1.10200 1.44710 1.28923 0.83621 0.75006 0.76578 0.75503 1.21711 1.21497 1.21156 1.20502 0.94030 0.99372 0.93051 1.20645 0.97529 0.92052 0.98455 1.20547 1.04844 0.96952 0.99554 1.17600 0.95778 0.83535 0.95205 1.46055 1.56848 1.08718 1.24837 1.21466 0.93539 0.98603 0.90637 1.21462 0.99081 0.93505 0.90168 1.20500 1.07274 0.94681 0.99097 1.20790 0.97185 0.94336 0.98201 0.94438 0.93179 0.93613 0.92823 0.91956 0.95280 0.93757 0.91650 0.86971 0.87452 0.94320 0.92475 0.91554 0.94237 0.92508 0.91631 0.87473 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.96 37.16 0.33 -2.28 16 2 C -0.08 -1.62 2.33 -90.62 -0.21 -1.83 16 3 C -0.13 -2.49 8.82 37.16 0.33 -2.17 16 4 C 0.07 1.67 1.21 -92.92 -0.11 1.55 16 5 H 0.04 0.94 6.57 -51.93 -0.34 0.60 16 6 C -0.58 -15.49 6.73 -34.44 -0.23 -15.72 16 7 H 0.05 1.33 7.76 -52.49 -0.41 0.92 16 8 C 0.02 0.62 5.45 -17.82 -0.10 0.52 16 9 N -0.91 -27.04 13.63 55.43 0.76 -26.28 16 10 Si 1.06 25.28 29.91 -169.99 -5.08 20.20 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 C -0.07 -1.54 3.51 -104.59 -0.37 -1.91 16 15 C -0.07 -1.46 8.79 -39.61 -0.35 -1.81 16 16 C -0.20 -3.81 9.21 -39.38 -0.36 -4.17 16 17 C 0.18 3.31 6.55 -83.79 -0.55 2.77 16 18 N -0.65 -9.98 3.41 -187.54 -0.64 -10.62 16 19 C 0.10 1.26 10.19 59.85 0.61 1.87 16 20 C 0.10 1.25 10.19 59.85 0.61 1.86 16 21 C -0.19 -3.79 9.21 -39.38 -0.36 -4.15 16 22 C -0.09 -1.88 9.21 -39.61 -0.36 -2.25 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.92 7.26 -51.93 -0.38 0.55 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 1.11 7.32 -51.93 -0.38 0.73 16 27 H 0.06 1.30 7.34 -51.93 -0.38 0.91 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.27 7.97 6.17 -40.82 -0.25 7.72 16 31 H 0.11 2.37 7.54 -52.49 -0.40 1.98 16 32 H 0.11 1.81 6.14 -52.48 -0.32 1.49 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 35 H 0.07 0.86 6.20 -51.93 -0.32 0.53 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 38 H 0.07 0.80 6.20 -51.93 -0.32 0.48 16 39 H 0.11 1.85 6.14 -52.49 -0.32 1.53 16 40 H 0.11 2.33 7.89 -52.49 -0.41 1.92 16 LS Contribution 316.16 15.07 4.76 4.76 Total: -1.00 -30.02 316.16 -7.74 -37.76 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.41 Total: 1.91 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: -1.13 Total: -27.73 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.12 Total: -36.90 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.08 Total: 20.20 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.02 -7.74 -37.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084396884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.755 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds