Wall clock time and date at job start Mon Mar 30 2020 06:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47183 * 2 1 4 4 C 1.53003 * 109.46942 * 120.00062 * 2 1 3 5 5 H 1.08996 * 109.47184 * 301.35057 * 4 2 1 6 6 C 1.50706 * 109.46872 * 181.35456 * 4 2 1 7 7 H 1.08000 * 119.99944 * 332.71940 * 6 4 2 8 8 C 1.37875 * 119.99687 * 152.72783 * 6 4 2 9 9 N 1.31517 * 120.00241 * 6.36707 * 8 6 4 10 10 Si 1.86799 * 119.99845 * 186.37055 * 8 6 4 11 11 H 1.48491 * 109.47429 * 270.00010 * 10 8 6 12 12 H 1.48506 * 109.47282 * 29.99908 * 10 8 6 13 13 H 1.48502 * 109.47340 * 149.99647 * 10 8 6 14 14 C 1.50697 * 109.47232 * 61.35320 * 4 2 1 15 15 C 1.38291 * 119.92603 * 59.72686 * 14 4 2 16 16 C 1.38096 * 120.07446 * 179.72447 * 15 14 4 17 17 C 1.38909 * 119.92674 * 0.54937 * 16 15 14 18 18 N 1.39670 * 120.07637 * 179.74560 * 17 16 15 19 19 C 1.46502 * 120.00008 * 179.97438 * 18 17 16 20 20 C 1.46497 * 120.00422 * 359.97438 * 18 17 16 21 21 C 1.38916 * 119.84865 * 359.72238 * 17 16 15 22 22 C 1.38102 * 119.92604 * 0.02562 * 21 17 16 23 23 H 1.09006 * 109.46644 * 60.00102 * 1 2 3 24 24 H 1.09000 * 109.47090 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47097 * 300.00155 * 1 2 3 26 26 H 1.09000 * 109.47097 * 239.99845 * 2 1 3 27 27 H 1.08998 * 109.47041 * 185.46471 * 3 2 1 28 28 H 1.09002 * 109.47452 * 305.46544 * 3 2 1 29 29 H 1.08999 * 109.47262 * 65.46885 * 3 2 1 30 30 H 0.97000 * 119.99730 * 354.66169 * 9 8 6 31 31 H 1.08002 * 119.95801 * 359.97438 * 15 14 4 32 32 H 1.08008 * 120.03924 * 180.26852 * 16 15 14 33 33 H 1.08997 * 109.46927 * 90.00481 * 19 18 17 34 34 H 1.09007 * 109.47148 * 210.00196 * 19 18 17 35 35 H 1.09002 * 109.47216 * 330.00009 * 19 18 17 36 36 H 1.09001 * 109.47582 * 89.99204 * 20 18 17 37 37 H 1.09002 * 109.47814 * 209.99838 * 20 18 17 38 38 H 1.09006 * 109.46804 * 329.99894 * 20 18 17 39 39 H 1.08002 * 120.03317 * 179.97438 * 21 17 16 40 40 H 1.07995 * 119.96369 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6570 -0.2217 2.1391 6 6 3.5467 -0.6923 1.2662 7 1 4.0960 -0.6300 0.3384 8 6 4.2237 -0.7453 2.4661 9 7 3.5634 -0.9471 3.5854 10 14 6.0790 -0.5306 2.5019 11 1 6.7336 -1.8557 2.3583 12 1 6.4969 0.3517 1.3828 13 1 6.4815 0.0831 3.7929 14 6 1.5652 -2.1514 1.2326 15 6 1.9234 -2.9851 0.1890 16 6 1.4948 -4.2978 0.1735 17 6 0.6935 -4.7774 1.2019 18 7 0.2539 -6.1030 1.1867 19 6 -0.5906 -6.6071 2.2725 20 6 0.6372 -6.9893 0.0850 21 6 0.3309 -3.9356 2.2458 22 6 0.7673 -2.6254 2.2578 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1256 1.4440 -0.0979 28 1 1.5990 1.9839 -0.8370 29 1 1.7589 1.9273 0.9349 30 1 2.5940 -0.9812 3.5772 31 1 2.5424 -2.6103 -0.6127 32 1 1.7785 -4.9497 -0.6396 33 1 -1.6392 -6.4480 2.0210 34 1 -0.4078 -7.6729 2.4101 35 1 -0.3533 -6.0758 3.1941 36 1 1.5715 -7.4934 0.3324 37 1 -0.1452 -7.7315 -0.0734 38 1 0.7706 -6.4024 -0.8238 39 1 -0.2923 -4.3052 3.0467 40 1 0.4862 -1.9706 3.0692 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084396884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:43 Heat of formation + Delta-G solvation = -1.132687 kcal Electronic energy + Delta-G solvation = -18378.585569 eV Core-core repulsion = 15770.971016 eV Total energy + Delta-G solvation = -2607.614553 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.59865 -38.35525 -36.12145 -34.37438 -31.92200 -31.18198 -28.93968 -28.44963 -27.62653 -25.63336 -24.11200 -23.16856 -21.47478 -20.57605 -18.71254 -18.16497 -16.63107 -16.06823 -15.86533 -15.68714 -15.48137 -15.24757 -14.76575 -14.48368 -14.30460 -14.07360 -13.43574 -13.34294 -13.17463 -12.98628 -12.85564 -12.78493 -12.75193 -12.62994 -12.13069 -11.92868 -11.82009 -11.62625 -11.42262 -11.05942 -10.68204 -10.42283 -10.05021 -9.65042 -8.48520 -7.88700 -6.12658 0.69943 0.95764 1.53687 1.61993 1.77977 2.37219 2.62868 3.16970 3.36339 4.01060 4.13366 4.22304 4.30199 4.36943 4.38997 4.47301 4.51860 4.61687 4.71810 4.83792 4.84245 4.88830 4.90920 4.91771 5.03265 5.04205 5.10091 5.13606 5.24236 5.34123 5.45823 5.52023 5.62082 5.68546 5.91501 6.06672 6.13182 6.34386 6.42305 6.51079 6.70822 6.83091 7.63647 8.94681 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.020133 B = 0.007417 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.430171 B = 3774.348836 C = 4473.287928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 C -0.123 4.123 4 C 0.071 3.929 5 H 0.002 0.998 6 C -0.575 4.575 7 H 0.044 0.956 8 C -0.031 4.031 9 N -0.942 5.942 10 Si 1.104 2.896 11 H -0.284 1.284 12 H -0.269 1.269 13 H -0.288 1.288 14 C -0.092 4.092 15 C -0.081 4.081 16 C -0.199 4.199 17 C 0.183 3.817 18 N -0.651 5.651 19 C 0.094 3.906 20 C 0.094 3.906 21 C -0.200 4.200 22 C -0.102 4.102 23 H 0.065 0.935 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.261 0.739 31 H 0.109 0.891 32 H 0.134 0.866 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.128 0.872 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.693 -8.614 -6.909 13.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 C -0.180 4.180 4 C 0.052 3.948 5 H 0.021 0.979 6 C -0.613 4.613 7 H 0.062 0.938 8 C -0.229 4.229 9 N -0.580 5.580 10 Si 0.928 3.072 11 H -0.210 1.210 12 H -0.194 1.194 13 H -0.214 1.214 14 C -0.094 4.094 15 C -0.099 4.099 16 C -0.221 4.221 17 C 0.082 3.918 18 N -0.365 5.365 19 C -0.049 4.049 20 C -0.049 4.049 21 C -0.223 4.223 22 C -0.121 4.121 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.152 0.848 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.145 0.855 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.448 -8.822 -5.922 12.429 hybrid contribution -1.157 0.161 -0.488 1.266 sum -7.605 -8.662 -6.409 13.189 Atomic orbital electron populations 1.21762 0.95472 1.00811 1.01049 1.21039 0.94797 0.96145 0.97719 1.21589 1.00722 0.95629 1.00048 1.17947 0.94637 0.88550 0.93657 0.97946 1.22088 0.91914 1.53122 0.94174 0.93809 1.26909 1.09965 0.93476 0.92544 1.70825 1.09713 1.47635 1.29831 0.83095 0.71021 0.77090 0.75969 1.21015 1.19407 1.21379 1.20322 0.95958 0.98715 0.94423 1.20688 0.98024 0.93107 0.98104 1.20779 1.04497 0.96362 1.00496 1.17736 0.94631 0.85167 0.94218 1.46386 1.56338 1.07570 1.26209 1.21679 0.93771 1.00029 0.89388 1.21693 1.00494 0.93588 0.89077 1.20688 1.07482 0.93911 1.00174 1.20802 0.98036 0.95473 0.97795 0.91630 0.93808 0.93960 0.92888 0.93693 0.91953 0.94818 0.92796 0.87329 0.84825 0.92938 0.89711 0.92426 0.93698 0.89455 0.91604 0.85459 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.96 71.98 0.65 -4.13 16 2 C -0.08 -3.25 2.33 -10.79 -0.03 -3.27 16 3 C -0.12 -4.78 8.82 71.98 0.63 -4.15 16 4 C 0.07 3.52 1.21 -12.28 -0.01 3.50 16 5 H 0.00 0.13 6.57 -2.39 -0.02 0.11 16 6 C -0.57 -31.56 6.73 25.60 0.17 -31.39 16 7 H 0.04 2.39 7.76 -2.91 -0.02 2.37 16 8 C -0.03 -1.75 5.45 84.65 0.46 -1.29 16 9 N -0.94 -58.02 13.63 21.45 0.29 -57.73 16 10 Si 1.10 51.54 29.91 68.60 2.05 53.59 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 14 C -0.09 -4.30 3.51 -19.84 -0.07 -4.37 16 15 C -0.08 -3.47 8.79 22.25 0.20 -3.27 16 16 C -0.20 -7.42 9.21 22.40 0.21 -7.21 16 17 C 0.18 6.56 6.55 38.22 0.25 6.81 16 18 N -0.65 -18.00 3.41 -747.26 -2.55 -20.55 16 19 C 0.09 2.03 10.19 127.77 1.30 3.33 16 20 C 0.09 1.95 10.19 127.77 1.30 3.26 16 21 C -0.20 -7.77 9.21 22.40 0.21 -7.56 16 22 C -0.10 -4.59 9.21 22.25 0.20 -4.39 16 23 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 24 H 0.04 1.60 7.26 -2.39 -0.02 1.58 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 2.19 7.32 -2.39 -0.02 2.17 16 27 H 0.04 1.87 7.34 -2.39 -0.02 1.85 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.26 16.17 6.17 -92.71 -0.57 15.60 16 31 H 0.11 4.62 7.54 -2.91 -0.02 4.60 16 32 H 0.13 4.17 6.14 -2.91 -0.02 4.15 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.38 8.07 -2.38 -0.02 1.36 16 35 H 0.06 1.35 6.20 -2.39 -0.01 1.33 16 36 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 1.31 8.07 -2.39 -0.02 1.29 16 38 H 0.07 1.37 6.20 -2.38 -0.01 1.36 16 39 H 0.13 4.29 6.14 -2.91 -0.02 4.27 16 40 H 0.09 4.37 7.89 -2.91 -0.02 4.35 16 Total: -1.00 -66.01 316.16 6.46 -59.55 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 1.19 Total: 19.28 kcal Atomic # 6 Polarization: -59.61 SS G_CDS: 5.47 Total: -54.14 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -2.25 Total: -78.28 kcal Atomic # 14 Polarization: 51.54 SS G_CDS: 2.05 Total: 53.59 kcal Total: -66.01 6.46 -59.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084396884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.416 kcal (2) G-P(sol) polarization free energy of solvation -66.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds