Wall clock time and date at job start Mon Mar 30 2020 06:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46976 * 2 1 4 4 N 1.46499 * 109.46892 * 180.02562 * 3 2 1 5 5 C 1.46506 * 119.99556 * 269.99477 * 4 3 2 6 6 C 1.52995 * 109.47100 * 270.00120 * 5 4 3 7 7 C 1.53008 * 109.46885 * 180.02562 * 6 5 4 8 8 C 1.38858 * 120.00559 * 89.99853 * 4 3 2 9 9 C 1.39567 * 119.83687 * 359.72730 * 8 4 3 10 10 C 1.36346 * 120.15683 * 179.71826 * 9 8 4 11 11 C 1.40878 * 119.83453 * 0.54954 * 10 9 8 12 12 C 1.41144 * 120.15502 * 179.69999 * 11 10 9 13 13 H 1.07999 * 120.00001 * 204.63193 * 12 11 10 14 14 C 1.39861 * 119.99863 * 24.62579 * 12 11 10 15 15 N 1.30907 * 120.00009 * 17.96157 * 14 12 11 16 16 Si 1.86804 * 119.99961 * 197.96820 * 14 12 11 17 17 H 1.48497 * 109.47010 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47099 * 119.99918 * 16 14 12 19 19 H 1.48498 * 109.46748 * 239.99859 * 16 14 12 20 20 C 1.40887 * 119.69123 * 359.72275 * 11 10 9 21 21 C 1.36330 * 119.83788 * 359.97438 * 20 11 10 22 22 H 1.09000 * 109.47018 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47142 * 300.00215 * 1 2 3 24 24 H 1.09000 * 109.47285 * 60.00211 * 1 2 3 25 25 H 1.09002 * 109.47294 * 240.00290 * 2 1 3 26 26 H 1.09000 * 109.47285 * 119.99789 * 2 1 3 27 27 H 1.08996 * 109.47522 * 59.99892 * 3 2 1 28 28 H 1.09000 * 109.46941 * 299.99999 * 3 2 1 29 29 H 1.08995 * 109.46984 * 30.00635 * 5 4 3 30 30 H 1.09006 * 109.46602 * 150.00070 * 5 4 3 31 31 H 1.08995 * 109.47622 * 300.00124 * 6 5 4 32 32 H 1.08999 * 109.47679 * 60.00700 * 6 5 4 33 33 H 1.09002 * 109.46995 * 299.99974 * 7 6 5 34 34 H 1.08990 * 109.47118 * 60.00138 * 7 6 5 35 35 H 1.08998 * 109.47123 * 180.02562 * 7 6 5 36 36 H 1.08000 * 119.92442 * 359.97259 * 9 8 4 37 37 H 1.08002 * 120.07982 * 180.27074 * 10 9 8 38 38 H 0.96997 * 119.99868 * 179.97438 * 15 14 12 39 39 H 1.08003 * 120.07794 * 179.97438 * 20 11 10 40 40 H 1.08006 * 119.92446 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.2379 1.4424 1.2679 6 6 4.4930 2.8848 1.7096 7 6 5.2591 2.8847 3.0341 8 6 4.1988 1.4426 -1.2034 9 6 3.4972 1.4370 -2.4098 10 6 4.1719 1.4429 -3.5947 11 6 5.5807 1.4430 -3.5990 12 6 6.2860 1.4427 -4.8215 13 1 7.2922 1.0529 -4.8643 14 6 5.6816 1.9471 -5.9776 15 7 4.6337 2.7257 -5.8819 16 14 6.3697 1.5094 -7.6582 17 1 7.5487 0.6216 -7.4945 18 1 5.3285 0.8090 -8.4524 19 1 6.7792 2.7502 -8.3638 20 6 6.2822 1.4429 -2.3772 21 6 5.5945 1.4432 -1.2001 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9564 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 3.6491 0.9285 2.0276 30 1 5.1903 0.9285 1.1371 31 1 5.0818 3.3988 0.9498 32 1 3.5407 3.3987 1.8404 33 1 4.6706 2.3706 3.7941 34 1 6.2114 2.3711 2.9029 35 1 5.4405 3.9123 3.3490 36 1 2.4172 1.4322 -2.4050 37 1 3.6276 1.4430 -4.5275 38 1 4.2148 3.0758 -6.6837 39 1 7.3623 1.4425 -2.3732 40 1 6.1309 1.4427 -0.2626 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093965615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:09 Heat of formation + Delta-G solvation = -5.953734 kcal Electronic energy + Delta-G solvation = -17919.301040 eV Core-core repulsion = 15311.477431 eV Total energy + Delta-G solvation = -2607.823609 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.19927 -37.83821 -35.24233 -35.16433 -33.10139 -31.38263 -30.56536 -27.72299 -27.21662 -24.77696 -23.09747 -22.50470 -22.12186 -20.83945 -19.18588 -17.97457 -16.97130 -16.47049 -15.83081 -15.51242 -15.45884 -15.09763 -14.63868 -14.47745 -14.10564 -13.91418 -13.62908 -13.25838 -13.03048 -12.95543 -12.82215 -12.57713 -12.55155 -12.34230 -12.24429 -12.12797 -11.98645 -11.61694 -11.50455 -11.44985 -11.06343 -10.96774 -10.08244 -9.38473 -8.54326 -8.04197 -5.99247 1.10352 1.19580 1.39546 1.54008 1.57972 2.27329 2.60230 2.84587 3.84805 4.02258 4.08483 4.14285 4.30951 4.39828 4.42661 4.51125 4.54892 4.62812 4.66591 4.80397 4.84064 4.96845 5.01753 5.07663 5.16471 5.19918 5.22264 5.25848 5.30445 5.33769 5.44688 5.46520 5.52493 5.74313 5.81133 5.93393 6.19646 6.41726 6.70873 6.89148 6.95442 7.09040 7.27329 8.48710 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023828 B = 0.005725 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.797389 B = 4889.732527 C = 5759.621580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.131 3.869 4 N -0.638 5.638 5 C 0.131 3.869 6 C -0.139 4.139 7 C -0.142 4.142 8 C 0.116 3.884 9 C -0.173 4.173 10 C -0.142 4.142 11 C 0.034 3.966 12 C -0.505 4.505 13 H 0.066 0.934 14 C 0.032 3.968 15 N -0.843 5.843 16 Si 0.976 3.024 17 H -0.261 1.261 18 H -0.266 1.266 19 H -0.268 1.268 20 C -0.197 4.197 21 C -0.165 4.165 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.038 0.962 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.282 0.718 39 H 0.094 0.906 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.406 -2.131 12.799 14.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.007 3.993 4 N -0.352 5.352 5 C 0.008 3.992 6 C -0.178 4.178 7 C -0.200 4.200 8 C 0.018 3.982 9 C -0.195 4.195 10 C -0.163 4.163 11 C 0.031 3.969 12 C -0.537 4.537 13 H 0.085 0.915 14 C -0.180 4.180 15 N -0.471 5.471 16 Si 0.798 3.202 17 H -0.184 1.184 18 H -0.191 1.191 19 H -0.193 1.193 20 C -0.217 4.217 21 C -0.187 4.187 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.630 -1.992 12.793 14.119 hybrid contribution 0.399 0.061 -1.199 1.265 sum -5.231 -1.931 11.594 12.866 Atomic orbital electron populations 1.21670 0.94044 1.02201 1.02207 1.21914 0.96794 0.97541 1.01331 1.21349 0.79758 0.96344 1.01844 1.46039 1.04134 1.82853 1.02148 1.21376 0.96798 0.96192 0.84848 1.21934 1.00425 0.97758 0.97703 1.21662 1.00156 1.02156 0.96039 1.17460 0.90756 1.04122 0.85828 1.20294 0.98093 1.09344 0.91780 1.20848 0.94567 1.04420 0.96416 1.17823 0.92581 0.93408 0.93080 1.19604 1.01419 1.38719 0.93933 0.91546 1.26607 0.94708 0.92126 1.04526 1.69931 1.20594 1.24587 1.32037 0.85258 0.79171 0.78984 0.76821 1.18447 1.19103 1.19319 1.20749 0.97883 1.10422 0.92665 1.20158 0.92355 1.09042 0.97170 0.92088 0.91252 0.93149 0.94334 0.91680 0.89823 0.92817 0.89750 0.92046 0.94380 0.92162 0.91276 0.92716 0.92306 0.87661 0.88427 0.90802 0.88781 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.91 71.98 0.71 -2.16 16 2 C -0.14 -3.50 6.26 30.59 0.19 -3.31 16 3 C 0.13 3.70 5.13 86.38 0.44 4.14 16 4 N -0.64 -21.50 2.58 -696.80 -1.80 -23.30 16 5 C 0.13 3.55 5.14 86.38 0.44 3.99 16 6 C -0.14 -3.51 6.26 30.60 0.19 -3.32 16 7 C -0.14 -2.71 9.91 71.98 0.71 -2.00 16 8 C 0.12 5.07 6.57 38.67 0.25 5.32 16 9 C -0.17 -8.32 9.13 22.15 0.20 -8.12 16 10 C -0.14 -7.87 8.64 22.47 0.19 -7.68 16 11 C 0.03 1.93 5.57 -21.27 -0.12 1.82 16 12 C -0.51 -29.05 9.03 23.38 0.21 -28.84 16 13 H 0.07 3.72 7.91 -2.91 -0.02 3.70 16 14 C 0.03 1.72 5.13 85.22 0.44 2.15 16 15 N -0.84 -46.96 10.96 21.82 0.24 -46.72 16 16 Si 0.98 40.86 29.60 68.60 2.03 42.89 16 17 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 18 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 19 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 20 C -0.20 -10.15 9.74 22.47 0.22 -9.93 16 21 C -0.17 -7.47 9.13 22.15 0.20 -7.27 16 22 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 1.93 8.07 -2.39 -0.02 1.91 16 28 H 0.05 1.70 6.17 -2.39 -0.01 1.68 16 29 H 0.08 1.84 8.07 -2.39 -0.02 1.82 16 30 H 0.06 1.76 6.16 -2.38 -0.01 1.74 16 31 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 4.61 6.11 -2.91 -0.02 4.59 16 37 H 0.10 5.68 6.16 -2.91 -0.02 5.67 16 38 H 0.28 14.23 8.30 -92.71 -0.77 13.46 16 39 H 0.09 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.12 4.54 6.10 -2.91 -0.02 4.52 16 Total: -1.00 -62.74 322.54 5.76 -56.98 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.99 Total: 25.37 kcal Atomic # 6 Polarization: -59.52 SS G_CDS: 4.30 Total: -55.22 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: -1.56 Total: -70.02 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -62.74 5.76 -56.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093965615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.026 kcal (2) G-P(sol) polarization free energy of solvation -62.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds