Wall clock time and date at job start Mon Mar 30 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47131 * 2 1 4 4 C 1.53005 * 109.47242 * 175.71043 * 3 2 1 5 5 C 1.52999 * 109.47308 * 186.80652 * 4 3 2 6 6 N 1.46500 * 109.47349 * 295.71063 * 3 2 1 7 7 C 1.46505 * 119.99929 * 306.04475 * 6 3 2 8 8 C 1.50699 * 109.46927 * 264.11932 * 7 6 3 9 9 H 1.08003 * 120.00316 * 4.10116 * 8 7 6 10 10 C 1.37881 * 119.99932 * 184.10432 * 8 7 6 11 11 N 1.31515 * 119.99667 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 119.99946 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.46886 * 90.00088 * 12 10 8 14 14 H 1.48493 * 109.47289 * 209.99824 * 12 10 8 15 15 H 1.48502 * 109.47119 * 330.00061 * 12 10 8 16 16 C 1.39671 * 120.00150 * 126.04266 * 6 3 2 17 17 C 1.38911 * 120.07531 * 175.30023 * 16 6 3 18 18 C 1.38108 * 119.92634 * 179.97438 * 17 16 6 19 19 C 1.38285 * 120.07257 * 359.97438 * 18 17 16 20 20 C 1.38292 * 120.15236 * 359.97438 * 19 18 17 21 21 C 1.38106 * 120.07061 * 0.02562 * 20 19 18 22 22 H 1.09004 * 109.47251 * 65.08727 * 1 2 3 23 23 H 1.08999 * 109.47226 * 185.09090 * 1 2 3 24 24 H 1.09000 * 109.47113 * 305.09306 * 1 2 3 25 25 H 1.09003 * 109.47008 * 240.00006 * 2 1 3 26 26 H 1.08995 * 109.47000 * 120.00100 * 2 1 3 27 27 H 1.08995 * 109.47333 * 55.71014 * 3 2 1 28 28 H 1.09003 * 109.46814 * 306.80816 * 4 3 2 29 29 H 1.08994 * 109.46675 * 66.80440 * 4 3 2 30 30 H 1.08991 * 109.46965 * 179.97438 * 5 4 3 31 31 H 1.08993 * 109.47160 * 300.00645 * 5 4 3 32 32 H 1.09007 * 109.46844 * 60.00238 * 5 4 3 33 33 H 1.09002 * 109.46871 * 24.11530 * 7 6 3 34 34 H 1.08996 * 109.46909 * 144.11972 * 7 6 3 35 35 H 0.97000 * 119.99348 * 180.02562 * 11 10 8 36 36 H 1.08002 * 120.03861 * 359.70171 * 17 16 6 37 37 H 1.07996 * 119.96192 * 179.97438 * 18 17 16 38 38 H 1.07998 * 119.92458 * 179.97438 * 19 18 17 39 39 H 1.07989 * 119.96217 * 180.02562 * 20 19 18 40 40 H 1.08004 * 120.03101 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5663 1.4439 0.1079 5 6 4.0642 2.8804 0.2786 6 7 1.6379 2.1027 -1.2445 7 6 1.9718 1.4971 -2.5360 8 6 3.2424 2.1108 -3.0650 9 1 3.7861 2.8271 -2.4668 10 6 3.7109 1.7580 -4.3129 11 7 4.8201 2.2933 -4.7743 12 14 2.7711 0.5187 -5.3474 13 1 1.7805 1.2307 -6.1940 14 1 3.7207 -0.2236 -6.2146 15 1 2.0649 -0.4360 -4.4558 16 6 0.9361 3.3094 -1.1996 17 6 0.6392 3.9862 -2.3759 18 6 -0.0553 5.1790 -2.3280 19 6 -0.4557 5.6994 -1.1110 20 6 -0.1628 5.0277 0.0619 21 6 0.5315 3.8345 0.0211 22 1 -0.3634 0.4329 -0.9321 23 1 -0.3633 -1.0236 0.0912 24 1 -0.3633 0.5908 0.8409 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6153 1.9780 0.8490 28 1 3.8701 0.8492 0.9694 29 1 3.9948 1.0160 -0.7983 30 1 5.1514 2.8813 0.3559 31 1 3.7603 3.4751 -0.5827 32 1 3.6355 3.3083 1.1850 33 1 2.1125 0.4237 -2.4084 34 1 1.1607 1.6759 -3.2417 35 1 5.1494 2.0454 -5.6523 36 1 0.9551 3.5823 -3.3264 37 1 -0.2861 5.7058 -3.2421 38 1 -0.9983 6.6325 -1.0763 39 1 -0.4772 5.4367 1.0106 40 1 0.7603 3.3107 0.9375 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094675785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:10 Heat of formation + Delta-G solvation = 7.390080 kcal Electronic energy + Delta-G solvation = -18913.942725 eV Core-core repulsion = 16306.697746 eV Total energy + Delta-G solvation = -2607.244978 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.63849 -38.28198 -35.12376 -33.97011 -32.90843 -31.76281 -30.73917 -28.86436 -26.77231 -24.62671 -23.19171 -22.79667 -22.13131 -20.22141 -19.01419 -18.67869 -16.73476 -16.52781 -16.04220 -15.55673 -15.37776 -14.89096 -14.62170 -14.58442 -14.35209 -14.00605 -13.76923 -13.68051 -13.35022 -13.24208 -12.81441 -12.50135 -12.40570 -12.27744 -12.16338 -11.87734 -11.74898 -11.66191 -11.62850 -11.36657 -11.07238 -10.75305 -10.39179 -9.62921 -8.25785 -7.83677 -6.26469 0.73993 0.96845 1.32139 1.33659 1.42452 2.32907 2.55164 3.08103 3.21865 3.79893 4.06718 4.22016 4.29278 4.33852 4.44081 4.47375 4.59460 4.65589 4.69313 4.79142 4.81902 4.85935 4.96664 4.99891 5.07823 5.10350 5.12912 5.19347 5.32935 5.35189 5.44236 5.48085 5.53317 5.58814 5.70999 5.81462 5.92876 6.21354 6.31151 6.72849 6.85404 7.00383 7.37278 8.90832 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.009752 C = 0.008115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.801576 B = 2870.389422 C = 3449.610918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.134 4.134 3 C 0.151 3.849 4 C -0.131 4.131 5 C -0.134 4.134 6 N -0.602 5.602 7 C 0.236 3.764 8 C -0.513 4.513 9 H 0.044 0.956 10 C 0.012 3.988 11 N -0.947 5.947 12 Si 0.931 3.069 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.247 1.247 16 C 0.223 3.777 17 C -0.220 4.220 18 C -0.086 4.086 19 C -0.200 4.200 20 C -0.074 4.074 21 C -0.217 4.217 22 H 0.032 0.968 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.013 0.987 35 H 0.263 0.737 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.145 0.855 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.221 -1.196 11.825 15.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.173 4.173 3 C 0.047 3.953 4 C -0.169 4.169 5 C -0.191 4.191 6 N -0.308 5.308 7 C 0.113 3.887 8 C -0.552 4.552 9 H 0.062 0.938 10 C -0.185 4.185 11 N -0.588 5.588 12 Si 0.756 3.244 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.171 1.171 16 C 0.118 3.882 17 C -0.243 4.243 18 C -0.104 4.104 19 C -0.220 4.220 20 C -0.093 4.093 21 C -0.240 4.240 22 H 0.051 0.949 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.111 0.889 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.163 0.837 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.998 -1.412 11.674 15.435 hybrid contribution 0.450 -0.323 -1.460 1.562 sum -9.548 -1.735 10.214 14.089 Atomic orbital electron populations 1.21623 0.94987 1.01693 1.01261 1.21929 0.96870 0.95846 1.02606 1.21232 0.93776 0.93538 0.86744 1.21893 0.96095 0.97221 1.01726 1.21566 0.99836 0.97191 1.00527 1.46656 1.57734 1.20911 1.05534 1.19189 0.93547 0.93685 0.82256 1.21743 1.07772 1.24384 1.01258 0.93815 1.25719 0.95730 0.98114 0.98959 1.70058 1.23627 1.45772 1.19334 0.85952 0.78844 0.80150 0.79478 1.19774 1.21103 1.17055 1.18076 0.89903 0.86084 0.94090 1.20842 1.07154 0.98971 0.97315 1.21059 0.96214 0.94292 0.98873 1.21043 1.06505 1.02322 0.92106 1.21133 0.95773 0.93540 0.98837 1.20837 1.07521 0.99965 0.95640 0.94907 0.91752 0.91884 0.93225 0.88866 0.88334 0.89593 0.93592 0.93864 0.95510 0.91752 0.94731 0.96904 0.92804 0.88612 0.85957 0.84636 0.83709 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.73 71.98 0.70 -2.78 16 2 C -0.13 -3.68 5.26 30.59 0.16 -3.52 16 3 C 0.15 4.76 1.96 44.99 0.09 4.85 16 4 C -0.13 -4.42 5.20 30.60 0.16 -4.26 16 5 C -0.13 -4.77 9.69 71.98 0.70 -4.07 16 6 N -0.60 -23.55 1.55 -677.66 -1.05 -24.60 16 7 C 0.24 10.86 3.26 85.63 0.28 11.14 16 8 C -0.51 -28.33 8.19 25.60 0.21 -28.12 16 9 H 0.04 2.73 6.44 -2.91 -0.02 2.71 16 10 C 0.01 0.69 5.47 84.66 0.46 1.15 16 11 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16 12 Si 0.93 43.56 27.39 68.60 1.88 45.44 16 13 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 14 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 15 H -0.25 -10.64 6.66 99.48 0.66 -9.98 16 16 C 0.22 8.62 6.49 38.21 0.25 8.87 16 17 C -0.22 -9.11 9.04 22.40 0.20 -8.91 16 18 C -0.09 -2.97 10.04 22.25 0.22 -2.75 16 19 C -0.20 -5.83 10.04 22.29 0.22 -5.60 16 20 C -0.07 -2.07 10.04 22.25 0.22 -1.84 16 21 C -0.22 -6.87 9.32 22.40 0.21 -6.66 16 22 H 0.03 0.98 7.88 -2.39 -0.02 0.96 16 23 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.05 1.58 6.28 -2.39 -0.01 1.56 16 26 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.10 2.72 5.31 -2.39 -0.01 2.71 16 28 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.05 1.92 6.81 -2.39 -0.02 1.90 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.03 1.16 6.31 -2.39 -0.02 1.15 16 32 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.03 1.57 5.39 -2.39 -0.01 1.56 16 34 H 0.01 0.62 5.97 -2.39 -0.01 0.60 16 35 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.10 4.52 6.14 -2.91 -0.02 4.51 16 37 H 0.12 3.77 8.06 -2.91 -0.02 3.75 16 38 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 39 H 0.15 2.95 8.06 -2.92 -0.02 2.93 16 40 H 0.13 3.59 5.73 -2.91 -0.02 3.57 16 Total: -1.00 -64.61 311.10 6.18 -58.43 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.96 Total: 21.70 kcal Atomic # 6 Polarization: -46.59 SS G_CDS: 4.09 Total: -42.50 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -0.75 Total: -83.06 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.44 kcal Total: -64.61 6.18 -58.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094675785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.820 kcal (2) G-P(sol) polarization free energy of solvation -64.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds