Wall clock time and date at job start Mon Mar 30 2020 06:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 C 1.50703 * 109.46912 * 175.00090 * 4 2 1 6 6 C 1.38234 * 119.99770 * 269.72838 * 5 4 2 7 7 C 1.38239 * 119.99901 * 179.76875 * 6 5 4 8 8 C 1.38240 * 119.99645 * 0.50240 * 7 6 5 9 9 C 1.50698 * 119.99659 * 179.72727 * 8 7 6 10 10 H 1.08996 * 109.46813 * 160.02550 * 9 8 7 11 11 C 1.53003 * 109.47156 * 280.02259 * 9 8 7 12 12 N 1.46496 * 109.47170 * 40.02325 * 9 8 7 13 13 C 1.36944 * 119.99765 * 154.99989 * 12 9 8 14 14 H 1.07994 * 120.00274 * 359.97438 * 13 12 9 15 15 C 1.38811 * 119.99927 * 180.02562 * 13 12 9 16 16 N 1.31624 * 120.00176 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00092 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47308 * 59.99923 * 17 15 13 19 19 H 1.48504 * 109.47444 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47075 * 299.99884 * 17 15 13 21 21 C 1.38227 * 120.00205 * 359.74956 * 8 7 6 22 22 C 1.38232 * 119.99860 * 90.00280 * 5 4 2 23 23 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 24 24 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 25 25 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 27 27 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 29 29 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 30 30 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 31 31 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 32 32 H 1.08001 * 120.00330 * 359.97438 * 6 5 4 33 33 H 1.08001 * 119.99843 * 180.23314 * 7 6 5 34 34 H 1.09000 * 109.47306 * 180.02562 * 11 9 8 35 35 H 1.09000 * 109.47042 * 300.00536 * 11 9 8 36 36 H 1.08996 * 109.47022 * 60.00419 * 11 9 8 37 37 H 0.96999 * 120.00479 * 334.99897 * 12 9 8 38 38 H 0.96998 * 120.00099 * 180.02562 * 16 15 13 39 39 H 1.07996 * 120.00251 * 179.97438 * 21 8 7 40 40 H 1.07998 * 120.00407 * 0.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1890 6 6 4.1323 -1.9319 0.6003 7 6 5.5100 -2.0288 0.5407 8 6 6.2972 -1.0281 1.0791 9 6 7.7991 -1.1368 1.0196 10 1 8.2403 -0.1490 1.1526 11 6 8.2876 -2.0674 2.1315 12 7 8.1983 -1.6789 -0.2815 13 6 9.4438 -1.4089 -0.7827 14 1 10.1316 -0.7961 -0.2190 15 6 9.8220 -1.9221 -2.0158 16 7 8.9836 -2.6686 -2.7031 17 14 11.5206 -1.5534 -2.6998 18 1 12.5532 -2.0684 -1.7650 19 1 11.6763 -2.2135 -4.0209 20 1 11.6830 -0.0857 -2.8570 21 6 5.7068 0.0719 1.6725 22 6 4.3290 0.1713 1.7275 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8898 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.7515 -0.1582 2.1370 31 1 1.6053 -1.7197 1.2953 32 1 3.5173 -2.7159 0.1839 33 1 5.9713 -2.8884 0.0773 34 1 9.3739 -2.1457 2.0888 35 1 7.9904 -1.6641 3.0996 36 1 7.8463 -3.0552 1.9985 37 1 7.5805 -2.2290 -0.7880 38 1 9.2480 -3.0275 -3.5646 39 1 6.3218 0.8535 2.0935 40 1 3.8677 1.0304 2.1918 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120096881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:02 Heat of formation + Delta-G solvation = -7.998570 kcal Electronic energy + Delta-G solvation = -17646.522572 eV Core-core repulsion = 15038.610292 eV Total energy + Delta-G solvation = -2607.912280 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.61417 -37.91538 -36.35287 -34.13076 -31.93545 -31.56185 -30.03833 -27.96111 -27.21525 -25.83973 -23.72840 -23.11016 -21.15039 -20.72767 -19.38423 -17.29208 -16.81324 -16.19654 -16.05575 -15.52958 -15.22873 -15.02940 -14.90331 -14.38475 -14.16658 -14.09140 -13.61442 -13.39659 -13.00611 -12.98034 -12.81767 -12.69812 -12.62621 -12.41316 -12.20757 -11.95836 -11.83475 -11.67823 -11.56868 -11.44446 -11.32080 -10.98876 -9.71395 -9.31141 -9.02387 -7.94320 -5.23237 0.52779 0.59398 1.46311 1.49792 1.55725 2.55883 2.92485 3.39658 3.85540 3.91078 4.00335 4.07090 4.13617 4.18585 4.23330 4.42872 4.50455 4.64396 4.66928 4.78215 4.81936 4.86107 4.90285 5.00127 5.01500 5.09809 5.11006 5.11971 5.22203 5.27645 5.38245 5.44863 5.48092 5.49129 5.52865 5.64604 5.80895 5.89269 6.22489 6.27783 7.33402 8.08611 8.33336 9.29318 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.029710 B = 0.004719 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.208844 B = 5932.354189 C = 6331.838013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.068 4.068 5 C -0.088 4.088 6 C -0.124 4.124 7 C -0.123 4.123 8 C -0.092 4.092 9 C 0.201 3.799 10 H 0.051 0.949 11 C -0.147 4.147 12 N -0.736 5.736 13 C -0.243 4.243 14 H 0.077 0.923 15 C -0.076 4.076 16 N -0.971 5.971 17 Si 0.974 3.026 18 H -0.277 1.277 19 H -0.296 1.296 20 H -0.278 1.278 21 C -0.123 4.123 22 C -0.112 4.112 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.374 0.626 38 H 0.251 0.749 39 H 0.133 0.867 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.119 6.316 10.278 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.105 4.105 5 C -0.088 4.088 6 C -0.142 4.142 7 C -0.142 4.142 8 C -0.093 4.093 9 C 0.093 3.907 10 H 0.069 0.931 11 C -0.207 4.207 12 N -0.377 5.377 13 C -0.374 4.374 14 H 0.095 0.905 15 C -0.268 4.268 16 N -0.622 5.622 17 Si 0.803 3.197 18 H -0.203 1.203 19 H -0.222 1.222 20 H -0.204 1.204 21 C -0.141 4.141 22 C -0.130 4.130 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.146 0.854 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.207 0.793 38 H 0.059 0.941 39 H 0.150 0.850 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.942 6.393 10.265 20.009 hybrid contribution 1.140 -0.464 -1.049 1.617 sum -14.801 5.929 9.216 18.416 Atomic orbital electron populations 1.21809 0.93682 1.02148 1.02305 1.21072 0.96466 0.96296 0.97277 1.21915 1.00784 0.95913 1.02121 1.20674 0.89146 1.01799 0.98889 1.20066 0.96866 0.93900 0.97931 1.21150 0.93753 0.99024 1.00295 1.20952 0.94497 0.98909 0.99793 1.20227 0.95462 0.95311 0.98280 1.19379 0.89442 0.95921 0.85983 0.93063 1.22242 1.00420 0.99572 0.98466 1.42735 1.15024 1.60984 1.18941 1.19635 0.92131 1.24976 1.00697 0.90528 1.25562 1.02058 1.01088 0.98070 1.69825 1.37168 1.40367 1.14858 0.85201 0.79768 0.77676 0.77060 1.20309 1.22192 1.20381 1.21186 0.95742 0.97155 1.00012 1.21210 0.92671 0.99061 1.00043 0.91626 0.92557 0.92307 0.92916 0.93740 0.92870 0.91339 0.89505 0.90448 0.85360 0.88367 0.93858 0.91266 0.94243 0.79321 0.94063 0.84953 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.19 71.98 0.66 -1.36 16 2 C -0.09 -1.72 2.91 -10.79 -0.03 -1.75 16 3 C -0.15 -2.81 8.76 71.98 0.63 -2.18 16 4 C -0.07 -1.26 4.84 29.85 0.14 -1.12 16 5 C -0.09 -2.24 4.71 -19.87 -0.09 -2.33 16 6 C -0.12 -3.79 9.70 22.27 0.22 -3.57 16 7 C -0.12 -4.58 9.06 22.27 0.20 -4.38 16 8 C -0.09 -3.42 4.95 -19.87 -0.10 -3.52 16 9 C 0.20 8.48 3.09 44.25 0.14 8.61 16 10 H 0.05 2.16 7.94 -2.39 -0.02 2.14 16 11 C -0.15 -5.56 9.47 71.98 0.68 -4.88 16 12 N -0.74 -38.90 5.07 -326.51 -1.66 -40.56 16 13 C -0.24 -13.88 9.93 84.03 0.83 -13.05 16 14 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 15 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 16 N -0.97 -60.98 13.06 21.65 0.28 -60.69 16 17 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 21 C -0.12 -3.73 9.67 22.27 0.22 -3.52 16 22 C -0.11 -2.85 7.96 22.27 0.18 -2.67 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 24 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.04 1.00 6.26 -2.39 -0.01 0.99 16 28 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.33 8.09 -2.39 -0.02 1.31 16 31 H 0.08 1.32 8.08 -2.39 -0.02 1.31 16 32 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.10 4.09 6.92 -2.91 -0.02 4.06 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.37 21.16 6.07 -92.71 -0.56 20.60 16 38 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.13 3.52 8.04 -2.91 -0.02 3.49 16 40 H 0.14 2.78 8.04 -2.91 -0.02 2.76 16 Total: -1.00 -65.67 325.67 5.23 -60.45 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 0.43 Total: 31.46 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 4.14 Total: -39.70 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -1.37 Total: -101.25 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -65.67 5.23 -60.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120096881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.450 kcal (2) G-P(sol) polarization free energy of solvation -65.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds