Wall clock time and date at job start Mon Mar 30 2020 06:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47049 * 2 1 4 4 C 1.53004 * 109.47044 * 119.99967 * 2 1 3 5 5 C 1.50702 * 109.46774 * 65.00527 * 4 2 1 6 6 C 1.38234 * 120.00257 * 90.00005 * 5 4 2 7 7 C 1.38238 * 119.99675 * 180.25732 * 6 5 4 8 8 C 1.38228 * 120.00110 * 359.52133 * 7 6 5 9 9 C 1.50706 * 119.99983 * 180.21781 * 8 7 6 10 10 H 1.08997 * 109.46726 * 200.21541 * 9 8 7 11 11 C 1.52994 * 109.47163 * 80.21409 * 9 8 7 12 12 N 1.46499 * 109.46879 * 320.21220 * 9 8 7 13 13 C 1.36941 * 119.99959 * 204.99835 * 12 9 8 14 14 H 1.07997 * 119.99942 * 0.02562 * 13 12 9 15 15 C 1.38813 * 120.00038 * 180.02562 * 13 12 9 16 16 N 1.31612 * 119.99891 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99823 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46881 * 90.00045 * 17 15 13 19 19 H 1.48498 * 109.47027 * 209.99737 * 17 15 13 20 20 H 1.48497 * 109.47329 * 329.99929 * 17 15 13 21 21 C 1.38234 * 120.00090 * 0.43562 * 8 7 6 22 22 C 1.38235 * 119.99522 * 269.97018 * 5 4 2 23 23 H 1.08994 * 109.47483 * 59.99391 * 1 2 3 24 24 H 1.09004 * 109.47056 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46982 * 299.99518 * 1 2 3 26 26 H 1.08998 * 109.47321 * 240.00154 * 2 1 3 27 27 H 1.08993 * 109.47324 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47475 * 300.00614 * 3 2 1 29 29 H 1.09003 * 109.46836 * 60.00392 * 3 2 1 30 30 H 1.08993 * 109.47638 * 305.00048 * 4 2 1 31 31 H 1.08998 * 109.46675 * 184.99844 * 4 2 1 32 32 H 1.08002 * 119.99744 * 359.97115 * 6 5 4 33 33 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 34 34 H 1.09005 * 109.47049 * 300.00243 * 11 9 8 35 35 H 1.09000 * 109.47119 * 59.99964 * 11 9 8 36 36 H 1.08997 * 109.47560 * 179.97438 * 11 9 8 37 37 H 0.97002 * 120.00040 * 25.00571 * 12 9 8 38 38 H 0.97001 * 120.00134 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.00324 * 179.78918 * 21 8 7 40 40 H 1.07996 * 120.00471 * 0.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 -2.1734 1.1888 6 6 2.4815 -3.0966 0.5949 7 6 2.1133 -4.4277 0.5348 8 6 0.9096 -4.8371 1.0772 9 6 0.5105 -6.2890 1.0160 10 1 -0.5679 -6.3753 1.1490 11 6 1.2248 -7.0616 2.1267 12 7 0.8880 -6.8447 -0.2860 13 6 0.2176 -7.9279 -0.7884 14 1 -0.5895 -8.3724 -0.2251 15 6 0.5756 -8.4548 -2.0218 16 7 1.5596 -7.9135 -2.7080 17 14 -0.3383 -9.9328 -2.7068 18 1 -1.4921 -9.4688 -3.5185 19 1 0.5788 -10.7298 -3.5606 20 1 -0.8282 -10.7749 -1.5861 21 6 0.0699 -3.9140 1.6719 22 6 0.4358 -2.5821 1.7277 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6054 -0.2618 2.1370 31 1 3.1263 -0.6443 1.2951 32 1 3.4233 -2.7772 0.1739 33 1 2.7677 -5.1483 0.0669 34 1 2.3033 -6.9752 1.9937 35 1 0.9440 -6.6481 3.0953 36 1 0.9358 -8.1116 2.0827 37 1 1.6128 -6.4453 -0.7920 38 1 1.8096 -8.2813 -3.5701 39 1 -0.8721 -4.2333 2.0927 40 1 -0.2205 -1.8608 2.1918 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120097028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:05 Heat of formation + Delta-G solvation = 7.230820 kcal Electronic energy + Delta-G solvation = -17646.729270 eV Core-core repulsion = 15039.477385 eV Total energy + Delta-G solvation = -2607.251884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.38044 -36.69155 -34.90184 -32.28878 -30.61433 -30.18990 -28.30410 -27.19158 -26.08376 -23.87011 -22.41468 -21.76875 -20.01574 -19.53997 -17.38081 -15.88541 -15.41550 -14.86620 -14.54468 -14.33739 -14.15987 -13.62765 -13.25535 -12.96600 -12.91722 -12.78910 -12.30143 -12.14008 -11.99422 -11.78369 -11.61313 -11.21773 -10.88170 -10.83760 -10.80987 -10.70393 -10.66757 -10.45240 -10.20656 -9.90980 -9.62974 -8.93320 -8.46876 -8.03194 -6.95254 -5.75243 -3.03618 1.78093 1.84467 3.44755 3.49717 3.51389 4.16756 4.61277 4.81135 4.84223 4.95079 5.21251 5.32467 5.37977 5.47230 5.51559 5.57257 5.61554 5.65400 5.76407 5.80774 5.84926 5.91048 5.92883 6.04971 6.11927 6.13765 6.29562 6.32286 6.37158 6.46194 6.51524 6.60322 6.72847 6.87094 6.97518 7.04515 7.28174 7.46464 7.71681 8.43427 9.54573 10.11559 10.46964 11.47629 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.029706 B = 0.004720 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.332207 B = 5930.456965 C = 6330.602768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.071 4.071 5 C -0.097 4.097 6 C -0.118 4.118 7 C -0.102 4.102 8 C -0.068 4.068 9 C 0.205 3.795 10 H 0.054 0.946 11 C -0.158 4.158 12 N -0.722 5.722 13 C -0.238 4.238 14 H 0.071 0.929 15 C -0.013 4.013 16 N -0.933 5.933 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.119 4.119 22 C -0.119 4.119 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.124 0.876 34 H 0.047 0.953 35 H 0.037 0.963 36 H 0.056 0.944 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.117 0.883 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.359 15.439 8.850 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.108 4.108 5 C -0.097 4.097 6 C -0.136 4.136 7 C -0.120 4.120 8 C -0.069 4.069 9 C 0.096 3.904 10 H 0.072 0.928 11 C -0.219 4.219 12 N -0.364 5.364 13 C -0.370 4.370 14 H 0.089 0.911 15 C -0.209 4.209 16 N -0.581 5.581 17 Si 0.738 3.262 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.207 1.207 21 C -0.137 4.137 22 C -0.137 4.137 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.135 0.865 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.248 15.282 8.797 17.634 hybrid contribution -0.231 -0.763 -0.684 1.051 sum 0.017 14.518 8.113 16.631 Atomic orbital electron populations 1.21911 0.95204 1.02527 1.01083 1.21092 0.96195 0.95504 0.98335 1.21850 1.00811 0.96162 1.01546 1.20607 1.00668 0.91637 0.97913 1.19691 0.95150 0.94931 0.99928 1.20958 0.99436 0.93134 1.00080 1.21042 0.96753 0.95658 0.98556 1.20404 0.93936 0.96749 0.95833 1.19213 0.97028 0.86548 0.87645 0.92827 1.22409 1.00853 1.00994 0.97615 1.42534 1.41338 1.35350 1.17198 1.19260 1.12064 1.04973 1.00658 0.91112 1.24728 0.98920 0.99807 0.97450 1.69659 1.30880 1.43024 1.14585 0.86191 0.78812 0.82438 0.78771 1.21743 1.21791 1.20749 1.20980 0.99432 0.92879 1.00454 1.20865 0.96266 0.95547 1.01029 0.93098 0.91743 0.93064 0.90993 0.92815 0.92797 0.92872 0.91515 0.91443 0.86749 0.85761 0.93382 0.94392 0.92530 0.78003 0.93515 0.86544 0.86876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.77 37.16 0.33 -1.27 16 2 C -0.09 -0.98 2.91 -90.62 -0.26 -1.24 16 3 C -0.15 -1.26 9.19 37.16 0.34 -0.92 16 4 C -0.07 -0.77 4.84 -27.88 -0.13 -0.91 16 5 C -0.10 -1.34 4.71 -104.62 -0.49 -1.83 16 6 C -0.12 -1.82 9.70 -39.58 -0.38 -2.21 16 7 C -0.10 -1.84 9.06 -39.59 -0.36 -2.20 16 8 C -0.07 -1.26 4.96 -104.62 -0.52 -1.78 16 9 C 0.21 4.27 3.09 -69.08 -0.21 4.05 16 10 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 11 C -0.16 -2.99 9.47 37.15 0.35 -2.64 16 12 N -0.72 -18.47 5.07 -54.55 -0.28 -18.74 16 13 C -0.24 -6.69 9.93 -15.06 -0.15 -6.84 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 15 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 16 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 17 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.12 -1.90 9.67 -39.58 -0.38 -2.28 16 22 C -0.12 -1.67 7.96 -39.58 -0.32 -1.99 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.80 6.27 -51.93 -0.33 0.47 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 32 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.12 2.40 6.90 -52.48 -0.36 2.04 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.38 10.36 6.05 -40.82 -0.25 10.11 16 38 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.12 1.67 8.04 -52.49 -0.42 1.25 16 40 H 0.11 1.33 8.04 -52.49 -0.42 0.91 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -30.08 325.65 -8.76 -38.85 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.80 Total: 7.68 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -2.29 Total: -22.53 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.45 Total: -46.42 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.08 -8.76 -38.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120097028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.077 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds