Wall clock time and date at job start Mon Mar 30 2020 06:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47049 * 2 1 4 4 C 1.53004 * 109.47044 * 119.99967 * 2 1 3 5 5 C 1.50702 * 109.46774 * 65.00527 * 4 2 1 6 6 C 1.38234 * 120.00257 * 90.00005 * 5 4 2 7 7 C 1.38238 * 119.99675 * 180.25732 * 6 5 4 8 8 C 1.38228 * 120.00110 * 359.52133 * 7 6 5 9 9 C 1.50706 * 119.99983 * 180.21781 * 8 7 6 10 10 H 1.08997 * 109.46726 * 200.21541 * 9 8 7 11 11 C 1.52994 * 109.47163 * 80.21409 * 9 8 7 12 12 N 1.46499 * 109.46879 * 320.21220 * 9 8 7 13 13 C 1.36941 * 119.99959 * 204.99835 * 12 9 8 14 14 H 1.07997 * 119.99942 * 0.02562 * 13 12 9 15 15 C 1.38813 * 120.00038 * 180.02562 * 13 12 9 16 16 N 1.31612 * 119.99891 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99823 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46881 * 90.00045 * 17 15 13 19 19 H 1.48498 * 109.47027 * 209.99737 * 17 15 13 20 20 H 1.48497 * 109.47329 * 329.99929 * 17 15 13 21 21 C 1.38234 * 120.00090 * 0.43562 * 8 7 6 22 22 C 1.38235 * 119.99522 * 269.97018 * 5 4 2 23 23 H 1.08994 * 109.47483 * 59.99391 * 1 2 3 24 24 H 1.09004 * 109.47056 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46982 * 299.99518 * 1 2 3 26 26 H 1.08998 * 109.47321 * 240.00154 * 2 1 3 27 27 H 1.08993 * 109.47324 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47475 * 300.00614 * 3 2 1 29 29 H 1.09003 * 109.46836 * 60.00392 * 3 2 1 30 30 H 1.08993 * 109.47638 * 305.00048 * 4 2 1 31 31 H 1.08998 * 109.46675 * 184.99844 * 4 2 1 32 32 H 1.08002 * 119.99744 * 359.97115 * 6 5 4 33 33 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 34 34 H 1.09005 * 109.47049 * 300.00243 * 11 9 8 35 35 H 1.09000 * 109.47119 * 59.99964 * 11 9 8 36 36 H 1.08997 * 109.47560 * 179.97438 * 11 9 8 37 37 H 0.97002 * 120.00040 * 25.00571 * 12 9 8 38 38 H 0.97001 * 120.00134 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.00324 * 179.78918 * 21 8 7 40 40 H 1.07996 * 120.00471 * 0.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 -2.1734 1.1888 6 6 2.4815 -3.0966 0.5949 7 6 2.1133 -4.4277 0.5348 8 6 0.9096 -4.8371 1.0772 9 6 0.5105 -6.2890 1.0160 10 1 -0.5679 -6.3753 1.1490 11 6 1.2248 -7.0616 2.1267 12 7 0.8880 -6.8447 -0.2860 13 6 0.2176 -7.9279 -0.7884 14 1 -0.5895 -8.3724 -0.2251 15 6 0.5756 -8.4548 -2.0218 16 7 1.5596 -7.9135 -2.7080 17 14 -0.3383 -9.9328 -2.7068 18 1 -1.4921 -9.4688 -3.5185 19 1 0.5788 -10.7298 -3.5606 20 1 -0.8282 -10.7749 -1.5861 21 6 0.0699 -3.9140 1.6719 22 6 0.4358 -2.5821 1.7277 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6054 -0.2618 2.1370 31 1 3.1263 -0.6443 1.2951 32 1 3.4233 -2.7772 0.1739 33 1 2.7677 -5.1483 0.0669 34 1 2.3033 -6.9752 1.9937 35 1 0.9440 -6.6481 3.0953 36 1 0.9358 -8.1116 2.0827 37 1 1.6128 -6.4453 -0.7920 38 1 1.8096 -8.2813 -3.5701 39 1 -0.8721 -4.2333 2.0927 40 1 -0.2205 -1.8608 2.1918 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120097028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:04 Heat of formation + Delta-G solvation = -8.073225 kcal Electronic energy + Delta-G solvation = -17647.392903 eV Core-core repulsion = 15039.477385 eV Total energy + Delta-G solvation = -2607.915517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.61506 -37.91678 -36.35403 -34.13255 -31.93575 -31.56270 -30.04040 -27.96172 -27.21618 -25.84244 -23.72839 -23.11101 -21.15076 -20.72722 -19.38681 -17.29363 -16.81588 -16.19499 -16.05596 -15.52927 -15.22940 -15.03113 -14.90550 -14.38637 -14.16682 -14.09200 -13.61532 -13.39612 -13.00809 -12.98337 -12.84744 -12.69582 -12.62865 -12.41347 -12.16372 -11.95939 -11.83217 -11.67971 -11.57002 -11.44433 -11.32078 -11.00190 -9.71419 -9.31166 -9.02514 -7.94644 -5.23438 0.52743 0.59416 1.46345 1.48415 1.56755 2.55645 2.92444 3.39624 3.85520 3.91013 4.00225 4.07034 4.13634 4.18554 4.23307 4.42839 4.50454 4.64368 4.66933 4.78261 4.81902 4.86083 4.90297 5.00124 5.01525 5.09813 5.11019 5.11945 5.22206 5.27644 5.38257 5.44880 5.48077 5.49304 5.52823 5.64610 5.80889 5.89243 6.22477 6.27666 7.33270 8.08413 8.33122 9.29257 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.029706 B = 0.004720 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.332207 B = 5930.456965 C = 6330.602768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.142 4.142 4 C -0.068 4.068 5 C -0.087 4.087 6 C -0.124 4.124 7 C -0.123 4.123 8 C -0.092 4.092 9 C 0.201 3.799 10 H 0.052 0.948 11 C -0.147 4.147 12 N -0.736 5.736 13 C -0.241 4.241 14 H 0.077 0.923 15 C -0.076 4.076 16 N -0.972 5.972 17 Si 0.974 3.026 18 H -0.287 1.287 19 H -0.296 1.296 20 H -0.268 1.268 21 C -0.122 4.122 22 C -0.112 4.112 23 H 0.052 0.948 24 H 0.043 0.957 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.038 0.962 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.374 0.626 38 H 0.251 0.749 39 H 0.133 0.867 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.581 17.285 10.350 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.199 4.199 4 C -0.105 4.105 5 C -0.088 4.088 6 C -0.142 4.142 7 C -0.142 4.142 8 C -0.093 4.093 9 C 0.093 3.907 10 H 0.070 0.930 11 C -0.207 4.207 12 N -0.377 5.377 13 C -0.373 4.373 14 H 0.095 0.905 15 C -0.268 4.268 16 N -0.622 5.622 17 Si 0.803 3.197 18 H -0.215 1.215 19 H -0.222 1.222 20 H -0.193 1.193 21 C -0.141 4.141 22 C -0.130 4.130 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.146 0.854 33 H 0.116 0.884 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.207 0.793 38 H 0.059 0.941 39 H 0.151 0.849 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.713 17.137 10.348 20.031 hybrid contribution 0.059 -1.216 -1.074 1.624 sum -0.654 15.920 9.274 18.436 Atomic orbital electron populations 1.21913 0.95234 1.01464 1.02122 1.21073 0.96160 0.96603 0.97276 1.21807 1.01151 0.94680 1.02306 1.20673 1.01548 0.89399 0.98889 1.20067 0.94479 0.96301 0.97913 1.21149 1.00491 0.92315 1.00269 1.20949 0.96865 0.96571 0.99768 1.20227 0.95005 0.95777 0.98272 1.19380 0.96947 0.88434 0.85968 0.93044 1.22240 1.00013 0.99977 0.98467 1.42746 1.40985 1.35100 1.18864 1.19669 1.11690 1.05283 1.00644 0.90507 1.25558 1.00195 1.02952 0.98113 1.69828 1.32814 1.44760 1.14836 0.85131 0.77335 0.79144 0.78117 1.21465 1.22225 1.19288 1.21188 0.99538 0.93349 1.00014 1.21210 0.96508 0.95212 1.00059 0.92870 0.93741 0.91339 0.92917 0.92307 0.92556 0.91626 0.89504 0.90449 0.85368 0.88372 0.94239 0.91265 0.93855 0.79319 0.94070 0.84943 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.77 71.98 0.63 -2.18 16 2 C -0.09 -1.72 2.91 -10.79 -0.03 -1.75 16 3 C -0.14 -2.02 9.19 71.98 0.66 -1.36 16 4 C -0.07 -1.26 4.84 29.85 0.14 -1.12 16 5 C -0.09 -2.23 4.71 -19.87 -0.09 -2.33 16 6 C -0.12 -3.79 9.70 22.27 0.22 -3.57 16 7 C -0.12 -4.58 9.06 22.27 0.20 -4.38 16 8 C -0.09 -3.42 4.96 -19.87 -0.10 -3.52 16 9 C 0.20 8.46 3.09 44.25 0.14 8.60 16 10 H 0.05 2.16 7.94 -2.39 -0.02 2.14 16 11 C -0.15 -5.56 9.47 71.98 0.68 -4.88 16 12 N -0.74 -38.87 5.07 -326.51 -1.66 -40.53 16 13 C -0.24 -13.78 9.93 84.03 0.83 -12.95 16 14 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 15 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 16 N -0.97 -60.99 13.06 21.65 0.28 -60.71 16 17 Si 0.97 47.04 29.55 68.60 2.03 49.06 16 18 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 19 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C -0.12 -3.72 9.67 22.27 0.22 -3.51 16 22 C -0.11 -2.85 7.96 22.27 0.18 -2.67 16 23 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.04 1.00 6.27 -2.38 -0.01 0.99 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.09 1.32 8.08 -2.39 -0.02 1.31 16 31 H 0.08 1.32 8.09 -2.39 -0.02 1.31 16 32 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.10 4.09 6.90 -2.91 -0.02 4.07 16 34 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.37 21.14 6.05 -92.71 -0.56 20.58 16 38 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.13 3.51 8.04 -2.91 -0.02 3.49 16 40 H 0.14 2.78 8.04 -2.91 -0.02 2.75 16 Total: -1.00 -65.71 325.65 5.23 -60.48 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.43 Total: 31.30 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 4.14 Total: -39.62 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -1.37 Total: -101.23 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.06 kcal Total: -65.71 5.23 -60.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120097028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.410 kcal (2) G-P(sol) polarization free energy of solvation -65.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds