Wall clock time and date at job start Mon Mar 30 2020 06:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46755 * 2 1 4 4 C 1.53004 * 109.46755 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46813 * 55.00915 * 4 3 2 6 6 C 1.53004 * 109.46948 * 175.00091 * 4 3 2 7 7 C 1.52995 * 109.47022 * 185.00139 * 6 4 3 8 8 N 1.46495 * 109.47077 * 295.00294 * 4 3 2 9 9 C 1.38865 * 119.99381 * 155.00472 * 8 4 3 10 10 C 1.39565 * 119.84533 * 359.72353 * 9 8 4 11 11 C 1.36342 * 120.16109 * 179.72212 * 10 9 8 12 12 C 1.40884 * 119.83359 * 0.55290 * 11 10 9 13 13 C 1.41136 * 120.15696 * 179.70023 * 12 11 10 14 14 H 1.08001 * 120.00215 * 204.63309 * 13 12 11 15 15 C 1.39863 * 119.99705 * 24.62699 * 13 12 11 16 16 N 1.30903 * 120.00360 * 17.95856 * 15 13 12 17 17 Si 1.86801 * 120.00112 * 197.95742 * 15 13 12 18 18 H 1.48496 * 109.47146 * 89.99851 * 17 15 13 19 19 H 1.48495 * 109.47261 * 210.00068 * 17 15 13 20 20 H 1.48504 * 109.46816 * 330.00228 * 17 15 13 21 21 C 1.40890 * 119.68874 * 359.71863 * 12 11 10 22 22 C 1.36331 * 119.84058 * 0.02562 * 21 12 11 23 23 H 1.09006 * 109.46990 * 299.99607 * 1 2 3 24 24 H 1.09003 * 109.47473 * 59.99758 * 1 2 3 25 25 H 1.08995 * 109.46669 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46636 * 240.00633 * 2 1 3 27 27 H 1.08990 * 109.47332 * 120.00048 * 2 1 3 28 28 H 1.09006 * 109.47051 * 60.00430 * 3 2 1 29 29 H 1.09003 * 109.47327 * 300.00331 * 3 2 1 30 30 H 1.09002 * 109.47166 * 305.00237 * 6 4 3 31 31 H 1.09001 * 109.46692 * 65.00113 * 6 4 3 32 32 H 1.09001 * 109.47408 * 60.00413 * 7 6 4 33 33 H 1.09003 * 109.46777 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47503 * 300.00116 * 7 6 4 35 35 H 0.96995 * 120.00153 * 335.27256 * 8 4 3 36 36 H 1.07997 * 119.91827 * 359.97438 * 10 9 8 37 37 H 1.07991 * 120.08420 * 180.26962 * 11 10 9 38 38 H 0.96997 * 120.00241 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.07941 * 180.02562 * 21 12 11 40 40 H 1.07999 * 119.92641 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9336 0.8531 -0.8410 6 6 4.0800 2.8796 -0.1251 7 6 5.6049 2.8705 -0.2498 8 7 4.0578 0.8590 1.2527 9 6 5.3169 0.2754 1.3024 10 6 6.1124 0.2415 0.1562 11 6 7.3519 -0.3249 0.1991 12 6 7.8243 -0.8871 1.4015 13 6 9.1037 -1.4808 1.4520 14 1 9.3198 -2.2359 2.1932 15 6 10.0918 -1.0912 0.5419 16 7 9.9717 0.0366 -0.1117 17 14 11.5830 -2.1801 0.2593 18 1 11.2968 -3.1356 -0.8408 19 1 12.7490 -1.3372 -0.1080 20 1 11.8885 -2.9334 1.5021 21 6 7.0133 -0.8543 2.5531 22 6 5.7782 -0.2800 2.4969 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3632 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6766 1.9564 0.8901 29 1 1.6766 1.9564 -0.8900 30 1 3.6457 3.3431 -1.0109 31 1 3.7913 3.4463 0.7602 32 1 5.8936 2.3038 -1.1351 33 1 5.9682 3.8943 -0.3389 34 1 6.0392 2.4070 0.6359 35 1 3.4998 0.8768 2.0458 36 1 5.7470 0.6685 -0.7660 37 1 7.9682 -0.3466 -0.6874 38 1 10.6571 0.3069 -0.7426 39 1 7.3694 -1.2830 3.4782 40 1 5.1552 -0.2545 3.3787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133165456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:24 Heat of formation + Delta-G solvation = 2.013022 kcal Electronic energy + Delta-G solvation = -18030.929845 eV Core-core repulsion = 15423.451700 eV Total energy + Delta-G solvation = -2607.478145 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.66480 -36.57617 -34.05502 -33.07682 -31.53730 -29.58942 -28.91650 -27.50870 -24.42668 -23.51217 -21.78257 -20.95445 -20.54991 -19.16390 -17.17712 -16.37648 -15.52520 -14.91297 -14.60711 -14.22105 -13.95091 -13.63177 -13.19954 -12.63438 -12.57202 -12.27118 -12.14536 -11.94852 -11.84105 -11.55180 -11.26628 -11.05345 -10.95138 -10.85836 -10.62586 -10.52824 -10.49157 -10.26341 -10.17072 -9.62442 -9.18229 -9.13274 -8.43678 -7.38532 -6.59724 -6.28997 -3.97893 2.95408 3.15606 3.18004 3.20954 3.40371 4.08749 4.39635 4.79944 4.82534 5.07875 5.13377 5.44717 5.52892 5.57980 5.63483 5.83932 5.87300 5.88738 5.94733 6.04901 6.16546 6.28055 6.29981 6.35837 6.37539 6.43155 6.44673 6.67802 7.00065 7.01518 7.05590 7.25610 7.41073 7.63388 7.75067 7.90864 8.20480 8.36350 8.57145 8.77853 8.87586 9.11209 9.21230 10.41683 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.033293 B = 0.005151 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.810745 B = 5434.105948 C = 5744.322807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.124 4.124 4 C 0.160 3.840 5 H 0.071 0.929 6 C -0.135 4.135 7 C -0.155 4.155 8 N -0.753 5.753 9 C 0.096 3.904 10 C -0.163 4.163 11 C -0.127 4.127 12 C 0.074 3.926 13 C -0.468 4.468 14 H 0.071 0.929 15 C 0.075 3.925 16 N -0.808 5.808 17 Si 0.901 3.099 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.265 1.265 21 C -0.189 4.189 22 C -0.162 4.162 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.382 0.618 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.275 0.725 39 H 0.089 0.911 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.974 3.001 -1.826 12.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.162 4.162 4 C 0.054 3.946 5 H 0.089 0.911 6 C -0.174 4.174 7 C -0.212 4.212 8 N -0.387 5.387 9 C -0.001 4.001 10 C -0.185 4.185 11 C -0.147 4.147 12 C 0.071 3.929 13 C -0.500 4.500 14 H 0.089 0.911 15 C -0.139 4.139 16 N -0.435 5.435 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.189 1.189 21 C -0.210 4.210 22 C -0.184 4.184 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.214 0.786 36 H 0.115 0.885 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.815 3.191 -2.176 12.431 hybrid contribution 0.596 -0.305 0.151 0.686 sum -11.220 2.886 -2.026 11.760 Atomic orbital electron populations 1.21788 0.96476 1.01273 1.01320 1.21491 0.94867 0.96906 1.02740 1.21870 0.95442 0.96990 1.01886 1.20686 0.91862 0.93050 0.89047 0.91142 1.22062 0.97301 0.97523 1.00522 1.22136 0.95060 1.00302 1.03716 1.43932 1.16630 1.67683 1.10473 1.17320 0.86434 1.01681 0.94649 1.20358 0.96133 1.06101 0.95862 1.20928 0.93964 1.01341 0.98476 1.17483 0.92766 0.92197 0.90429 1.19370 0.95757 1.20373 1.14453 0.91071 1.25765 0.99370 0.94203 0.94611 1.69856 1.33880 1.18067 1.21727 0.86434 0.80594 0.80774 0.79539 1.19602 1.20634 1.18920 1.20515 0.95805 1.07334 0.97314 1.19797 0.97611 1.06003 0.95004 0.93051 0.93106 0.93035 0.92139 0.91424 0.92106 0.91524 0.92841 0.92651 0.92580 0.94481 0.90162 0.78604 0.88512 0.86548 0.91426 0.89299 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.12 -1.42 5.82 -26.73 -0.16 -1.58 16 3 C -0.12 -1.43 4.75 -26.73 -0.13 -1.56 16 4 C 0.16 2.34 2.21 -67.93 -0.15 2.19 16 5 H 0.07 1.14 6.44 -51.93 -0.33 0.81 16 6 C -0.13 -1.94 5.61 -26.73 -0.15 -2.09 16 7 C -0.16 -2.67 8.22 37.15 0.31 -2.36 16 8 N -0.75 -12.66 4.61 -52.03 -0.24 -12.90 16 9 C 0.10 2.04 5.49 -83.68 -0.46 1.58 16 10 C -0.16 -3.70 6.62 -39.77 -0.26 -3.97 16 11 C -0.13 -3.31 8.64 -39.26 -0.34 -3.65 16 12 C 0.07 2.01 5.57 -106.79 -0.60 1.42 16 13 C -0.47 -12.85 9.03 -37.87 -0.34 -13.19 16 14 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 15 C 0.08 1.96 5.13 -17.34 -0.09 1.87 16 16 N -0.81 -21.55 10.96 55.54 0.61 -20.94 16 17 Si 0.90 19.45 29.60 -169.99 -5.03 14.42 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 21 C -0.19 -4.73 9.74 -39.27 -0.38 -5.11 16 22 C -0.16 -3.63 9.82 -39.77 -0.39 -4.02 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.87 7.75 -51.93 -0.40 0.47 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.99 6.34 -51.93 -0.33 0.66 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.65 5.40 -51.93 -0.28 1.37 16 35 H 0.38 5.86 8.60 -40.82 -0.35 5.51 16 36 H 0.10 2.03 3.99 -52.49 -0.21 1.82 16 37 H 0.12 3.17 6.16 -52.49 -0.32 2.84 16 38 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 39 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 40 H 0.08 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 313.34 15.07 4.72 4.72 Total: -1.00 -27.25 313.34 -9.14 -36.39 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.43 Total: 9.85 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: -2.77 Total: -31.55 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.37 Total: -33.84 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.25 -9.14 -36.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133165456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.408 kcal (2) G-P(sol) polarization free energy of solvation -27.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds