Wall clock time and date at job start Mon Mar 30 2020 06:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46755 * 2 1 4 4 C 1.53004 * 109.46755 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46813 * 55.00915 * 4 3 2 6 6 C 1.53004 * 109.46948 * 175.00091 * 4 3 2 7 7 C 1.52995 * 109.47022 * 185.00139 * 6 4 3 8 8 N 1.46495 * 109.47077 * 295.00294 * 4 3 2 9 9 C 1.38865 * 119.99381 * 155.00472 * 8 4 3 10 10 C 1.39565 * 119.84533 * 359.72353 * 9 8 4 11 11 C 1.36342 * 120.16109 * 179.72212 * 10 9 8 12 12 C 1.40884 * 119.83359 * 0.55290 * 11 10 9 13 13 C 1.41136 * 120.15696 * 179.70023 * 12 11 10 14 14 H 1.08001 * 120.00215 * 204.63309 * 13 12 11 15 15 C 1.39863 * 119.99705 * 24.62699 * 13 12 11 16 16 N 1.30903 * 120.00360 * 17.95856 * 15 13 12 17 17 Si 1.86801 * 120.00112 * 197.95742 * 15 13 12 18 18 H 1.48496 * 109.47146 * 89.99851 * 17 15 13 19 19 H 1.48495 * 109.47261 * 210.00068 * 17 15 13 20 20 H 1.48504 * 109.46816 * 330.00228 * 17 15 13 21 21 C 1.40890 * 119.68874 * 359.71863 * 12 11 10 22 22 C 1.36331 * 119.84058 * 0.02562 * 21 12 11 23 23 H 1.09006 * 109.46990 * 299.99607 * 1 2 3 24 24 H 1.09003 * 109.47473 * 59.99758 * 1 2 3 25 25 H 1.08995 * 109.46669 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46636 * 240.00633 * 2 1 3 27 27 H 1.08990 * 109.47332 * 120.00048 * 2 1 3 28 28 H 1.09006 * 109.47051 * 60.00430 * 3 2 1 29 29 H 1.09003 * 109.47327 * 300.00331 * 3 2 1 30 30 H 1.09002 * 109.47166 * 305.00237 * 6 4 3 31 31 H 1.09001 * 109.46692 * 65.00113 * 6 4 3 32 32 H 1.09001 * 109.47408 * 60.00413 * 7 6 4 33 33 H 1.09003 * 109.46777 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47503 * 300.00116 * 7 6 4 35 35 H 0.96995 * 120.00153 * 335.27256 * 8 4 3 36 36 H 1.07997 * 119.91827 * 359.97438 * 10 9 8 37 37 H 1.07991 * 120.08420 * 180.26962 * 11 10 9 38 38 H 0.96997 * 120.00241 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.07941 * 180.02562 * 21 12 11 40 40 H 1.07999 * 119.92641 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9336 0.8531 -0.8410 6 6 4.0800 2.8796 -0.1251 7 6 5.6049 2.8705 -0.2498 8 7 4.0578 0.8590 1.2527 9 6 5.3169 0.2754 1.3024 10 6 6.1124 0.2415 0.1562 11 6 7.3519 -0.3249 0.1991 12 6 7.8243 -0.8871 1.4015 13 6 9.1037 -1.4808 1.4520 14 1 9.3198 -2.2359 2.1932 15 6 10.0918 -1.0912 0.5419 16 7 9.9717 0.0366 -0.1117 17 14 11.5830 -2.1801 0.2593 18 1 11.2968 -3.1356 -0.8408 19 1 12.7490 -1.3372 -0.1080 20 1 11.8885 -2.9334 1.5021 21 6 7.0133 -0.8543 2.5531 22 6 5.7782 -0.2800 2.4969 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3632 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6766 1.9564 0.8901 29 1 1.6766 1.9564 -0.8900 30 1 3.6457 3.3431 -1.0109 31 1 3.7913 3.4463 0.7602 32 1 5.8936 2.3038 -1.1351 33 1 5.9682 3.8943 -0.3389 34 1 6.0392 2.4070 0.6359 35 1 3.4998 0.8768 2.0458 36 1 5.7470 0.6685 -0.7660 37 1 7.9682 -0.3466 -0.6874 38 1 10.6571 0.3069 -0.7426 39 1 7.3694 -1.2830 3.4782 40 1 5.1552 -0.2545 3.3787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133165456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:23 Heat of formation + Delta-G solvation = -11.346170 kcal Electronic energy + Delta-G solvation = -18031.509143 eV Core-core repulsion = 15423.451700 eV Total energy + Delta-G solvation = -2608.057443 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25226 -38.10698 -35.59724 -34.46285 -33.11040 -31.35238 -30.54087 -28.93587 -26.09690 -24.78281 -23.45641 -22.37455 -21.87312 -20.67377 -19.12638 -17.95179 -16.98685 -16.67674 -15.82776 -15.54399 -15.33611 -15.10715 -14.65292 -14.33068 -13.97875 -13.78195 -13.59671 -13.35966 -13.20166 -12.88386 -12.79722 -12.73200 -12.46642 -12.26896 -12.11180 -11.83845 -11.66331 -11.53616 -11.45481 -11.40086 -10.99213 -10.94856 -10.18322 -9.28914 -8.52231 -8.05539 -5.96113 1.15031 1.24117 1.39814 1.52080 1.61392 2.28278 2.87545 3.00005 3.78822 3.89767 4.15007 4.16215 4.29113 4.44641 4.54273 4.54487 4.58495 4.67543 4.86379 4.90549 4.94667 5.04209 5.08324 5.10394 5.18717 5.21956 5.30604 5.31835 5.35732 5.46007 5.50731 5.54230 5.57862 5.77080 5.87744 6.02804 6.23105 6.45378 6.73267 6.94820 7.12301 7.22229 7.41039 8.50763 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.033293 B = 0.005151 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.810745 B = 5434.105948 C = 5744.322807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.113 4.113 4 C 0.156 3.844 5 H 0.055 0.945 6 C -0.127 4.127 7 C -0.153 4.153 8 N -0.741 5.741 9 C 0.122 3.878 10 C -0.165 4.165 11 C -0.146 4.146 12 C 0.034 3.966 13 C -0.509 4.509 14 H 0.064 0.936 15 C 0.033 3.967 16 N -0.841 5.841 17 Si 0.974 3.026 18 H -0.265 1.265 19 H -0.271 1.271 20 H -0.262 1.262 21 C -0.201 4.201 22 C -0.172 4.172 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.394 0.606 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.281 0.719 39 H 0.091 0.909 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.098 3.856 -2.061 14.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.151 4.151 4 C 0.050 3.950 5 H 0.073 0.927 6 C -0.166 4.166 7 C -0.210 4.210 8 N -0.375 5.375 9 C 0.023 3.977 10 C -0.186 4.186 11 C -0.166 4.166 12 C 0.031 3.969 13 C -0.540 4.540 14 H 0.082 0.918 15 C -0.178 4.178 16 N -0.469 5.469 17 Si 0.796 3.204 18 H -0.190 1.190 19 H -0.195 1.195 20 H -0.186 1.186 21 C -0.221 4.221 22 C -0.194 4.194 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.228 0.772 36 H 0.131 0.869 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.992 4.066 -2.405 14.767 hybrid contribution 1.061 -0.472 0.239 1.186 sum -12.930 3.593 -2.166 13.594 Atomic orbital electron populations 1.21744 0.94696 1.01739 1.02240 1.21475 0.96441 0.96707 1.01451 1.21803 0.92475 0.97258 1.03565 1.20884 0.94218 0.92788 0.87144 0.92731 1.22011 0.94930 0.97398 1.02297 1.22052 0.97353 1.00317 1.01296 1.43990 1.14903 1.66442 1.12129 1.17381 0.87527 0.99336 0.93502 1.20461 0.95299 1.05640 0.97244 1.20845 0.95172 1.02921 0.97641 1.17788 0.93600 0.93927 0.91568 1.19581 0.96952 1.21479 1.16005 0.91787 1.26553 1.02135 0.95233 0.93910 1.69923 1.35199 1.19387 1.22436 0.85333 0.76886 0.78785 0.79406 1.18993 1.19535 1.18626 1.20697 0.96796 1.07707 0.96883 1.20075 0.97176 1.05609 0.96544 0.92245 0.92039 0.92915 0.93219 0.93020 0.90742 0.89435 0.90009 0.91757 0.93692 0.93438 0.93855 0.77194 0.86930 0.88646 0.90905 0.89110 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 71.98 0.71 -1.64 16 2 C -0.12 -2.52 5.82 30.60 0.18 -2.34 16 3 C -0.11 -2.18 4.75 30.60 0.15 -2.03 16 4 C 0.16 4.12 2.21 45.00 0.10 4.22 16 5 H 0.05 1.66 6.44 -2.39 -0.02 1.64 16 6 C -0.13 -3.26 5.61 30.59 0.17 -3.09 16 7 C -0.15 -5.09 8.22 71.98 0.59 -4.50 16 8 N -0.74 -23.26 4.61 -318.52 -1.47 -24.73 16 9 C 0.12 5.09 5.49 38.67 0.21 5.30 16 10 C -0.16 -7.59 6.62 22.15 0.15 -7.45 16 11 C -0.15 -7.92 8.64 22.48 0.19 -7.72 16 12 C 0.03 1.93 5.57 -21.27 -0.12 1.81 16 13 C -0.51 -29.27 9.03 23.38 0.21 -29.06 16 14 H 0.06 3.60 7.91 -2.91 -0.02 3.58 16 15 C 0.03 1.79 5.13 85.22 0.44 2.23 16 16 N -0.84 -46.65 10.96 21.82 0.24 -46.41 16 17 Si 0.97 41.01 29.60 68.60 2.03 43.04 16 18 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 21 C -0.20 -10.27 9.74 22.47 0.22 -10.05 16 22 C -0.17 -7.60 9.82 22.15 0.22 -7.38 16 23 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.05 1.22 7.75 -2.39 -0.02 1.20 16 28 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.56 6.34 -2.39 -0.02 1.55 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.04 1.75 5.40 -2.39 -0.01 1.74 16 35 H 0.39 10.86 8.60 -92.71 -0.80 10.06 16 36 H 0.11 4.75 3.99 -2.91 -0.01 4.74 16 37 H 0.10 5.50 6.16 -2.92 -0.02 5.48 16 38 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 39 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 40 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -61.54 313.34 4.44 -57.10 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: 0.22 Total: 32.71 kcal Atomic # 6 Polarization: -65.13 SS G_CDS: 3.42 Total: -61.71 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -1.23 Total: -71.14 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -61.54 4.44 -57.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133165456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.755 kcal (2) G-P(sol) polarization free energy of solvation -61.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds