Wall clock time and date at job start Mon Mar 30 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47507 * 2 1 4 4 C 1.52996 * 109.47507 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46864 * 304.99819 * 4 3 2 6 6 C 1.53002 * 109.47117 * 185.00043 * 4 3 2 7 7 C 1.53004 * 109.47030 * 175.13660 * 6 4 3 8 8 N 1.46499 * 109.47402 * 65.00035 * 4 3 2 9 9 C 1.38857 * 119.99704 * 242.19238 * 8 4 3 10 10 C 1.39562 * 119.84560 * 353.15523 * 9 8 4 11 11 C 1.36335 * 120.15941 * 179.72190 * 10 9 8 12 12 C 1.40890 * 119.83730 * 0.55704 * 11 10 9 13 13 C 1.41140 * 120.15210 * 179.69547 * 12 11 10 14 14 H 1.08005 * 119.99758 * 207.22191 * 13 12 11 15 15 C 1.39865 * 120.00246 * 27.23074 * 13 12 11 16 16 N 1.30898 * 119.99841 * 13.52161 * 15 13 12 17 17 Si 1.86797 * 119.99972 * 193.52884 * 15 13 12 18 18 H 1.48502 * 109.47045 * 59.99602 * 17 15 13 19 19 H 1.48496 * 109.47183 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47163 * 299.99685 * 17 15 13 21 21 C 1.40880 * 119.68810 * 359.72134 * 12 11 10 22 22 C 1.36337 * 119.83775 * 359.97438 * 21 12 11 23 23 H 1.08998 * 109.47632 * 300.00175 * 1 2 3 24 24 H 1.09005 * 109.46893 * 59.99990 * 1 2 3 25 25 H 1.09001 * 109.47442 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46922 * 239.99943 * 2 1 3 27 27 H 1.09005 * 109.46893 * 120.00010 * 2 1 3 28 28 H 1.09001 * 109.47283 * 59.99527 * 3 2 1 29 29 H 1.09002 * 109.47156 * 300.00435 * 3 2 1 30 30 H 1.08999 * 109.46889 * 55.14243 * 6 4 3 31 31 H 1.08992 * 109.47222 * 295.13587 * 6 4 3 32 32 H 1.08997 * 109.47145 * 175.86675 * 7 6 4 33 33 H 1.09004 * 109.46877 * 55.86633 * 7 6 4 34 34 H 1.09002 * 109.47467 * 295.87085 * 7 6 4 35 35 H 0.96997 * 119.99771 * 62.18120 * 8 4 3 36 36 H 1.08002 * 119.91855 * 359.97438 * 10 9 8 37 37 H 1.08001 * 120.08403 * 180.28079 * 11 10 9 38 38 H 0.97001 * 119.99924 * 180.02562 * 16 15 13 39 39 H 1.08000 * 120.08002 * 179.97438 * 21 12 11 40 40 H 1.08002 * 119.92028 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9329 0.8531 0.8427 6 6 4.0799 2.8794 0.1264 7 6 5.6050 2.8705 0.2490 8 7 4.0589 0.8585 -1.2508 9 6 4.8193 -0.3031 -1.2245 10 6 5.2366 -0.8324 -0.0025 11 6 5.9786 -1.9757 0.0311 12 6 6.3338 -2.6165 -1.1723 13 6 7.1072 -3.7969 -1.1455 14 1 7.7385 -4.0479 -1.9851 15 6 7.0558 -4.6415 -0.0319 16 7 6.1107 -4.4905 0.8610 17 14 8.3360 -5.9851 0.1811 18 1 9.6872 -5.3738 0.2564 19 1 8.0622 -6.7356 1.4328 20 1 8.2765 -6.9135 -0.9763 21 6 5.9139 -2.0732 -2.4024 22 6 5.1670 -0.9327 -2.4206 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.6469 3.3423 1.0131 31 1 3.7899 3.4466 -0.7580 32 1 5.9743 3.8959 0.2647 33 1 6.0349 2.3425 -0.6023 34 1 5.8925 2.3666 1.1718 35 1 3.8513 1.2833 -2.0978 36 1 4.9678 -0.3374 0.9190 37 1 6.2971 -2.3868 0.9777 38 1 6.0753 -5.0760 1.6335 39 1 6.1829 -2.5589 -3.3287 40 1 4.8447 -0.5148 -3.3629 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133165671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:26 Heat of formation + Delta-G solvation = -15.839647 kcal Electronic energy + Delta-G solvation = -17998.469515 eV Core-core repulsion = 15390.217221 eV Total energy + Delta-G solvation = -2608.252295 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.08241 -38.13117 -35.54564 -34.45924 -33.15716 -31.32755 -30.39795 -29.00107 -26.15728 -24.86345 -23.41530 -22.29002 -21.89079 -20.78012 -19.12649 -17.96663 -16.92551 -16.55966 -15.74746 -15.63029 -15.32308 -15.09839 -14.65115 -14.36315 -14.06495 -13.80451 -13.56395 -13.37095 -13.20224 -13.00366 -12.76624 -12.72529 -12.49904 -12.28746 -12.09293 -11.82059 -11.65747 -11.54826 -11.51972 -11.45638 -11.01178 -10.96595 -10.17751 -9.36209 -8.47859 -8.06301 -5.98708 1.14663 1.22988 1.39779 1.50823 1.61108 2.28822 2.88940 3.00150 3.78613 3.87475 4.13567 4.22654 4.28898 4.43867 4.47738 4.54131 4.55535 4.71197 4.86481 4.91314 4.95151 5.03873 5.08288 5.12877 5.15930 5.21300 5.28209 5.32279 5.33713 5.43561 5.48971 5.50851 5.54621 5.75911 5.87183 6.02000 6.22215 6.44130 6.72694 6.94551 7.12119 7.21570 7.40487 8.53533 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.024771 B = 0.005613 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.065453 B = 4987.437240 C = 5379.248597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.118 4.118 4 C 0.146 3.854 5 H 0.066 0.934 6 C -0.123 4.123 7 C -0.147 4.147 8 N -0.738 5.738 9 C 0.134 3.866 10 C -0.177 4.177 11 C -0.136 4.136 12 C 0.029 3.971 13 C -0.507 4.507 14 H 0.065 0.935 15 C 0.029 3.971 16 N -0.849 5.849 17 Si 0.977 3.023 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.263 1.263 21 C -0.192 4.192 22 C -0.175 4.175 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.039 0.961 35 H 0.394 0.606 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.280 0.720 39 H 0.093 0.907 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.086 12.012 0.499 13.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.157 4.157 4 C 0.040 3.960 5 H 0.084 0.916 6 C -0.162 4.162 7 C -0.204 4.204 8 N -0.371 5.371 9 C 0.034 3.966 10 C -0.199 4.199 11 C -0.156 4.156 12 C 0.026 3.974 13 C -0.539 4.539 14 H 0.083 0.917 15 C -0.182 4.182 16 N -0.478 5.478 17 Si 0.798 3.202 18 H -0.188 1.188 19 H -0.195 1.195 20 H -0.188 1.188 21 C -0.212 4.212 22 C -0.197 4.197 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.228 0.772 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.212 11.936 0.901 13.974 hybrid contribution 0.626 -0.985 -0.170 1.179 sum -6.586 10.951 0.731 12.800 Atomic orbital electron populations 1.21726 0.94755 1.01390 1.02298 1.21413 0.96408 0.97514 1.00615 1.21952 0.94642 0.96099 1.02969 1.21041 0.93321 0.93974 0.87651 0.91641 1.21859 0.95582 0.95838 1.02908 1.21679 0.96681 1.01176 1.00906 1.43915 1.59394 1.26303 1.07476 1.17365 0.96938 0.89722 0.92554 1.20269 1.04932 0.98840 0.95813 1.20883 1.01594 0.94977 0.98133 1.17797 0.94182 0.93677 0.91741 1.19547 1.25052 1.06165 1.03108 0.91706 1.26573 0.96748 1.00357 0.94477 1.69900 1.29660 1.37264 1.10970 0.85345 0.78844 0.77606 0.78367 1.18804 1.19535 1.18768 1.20759 1.04399 0.99414 0.96606 1.20103 1.05281 0.98224 0.96092 0.91693 0.92095 0.93618 0.94090 0.94259 0.89911 0.90961 0.89843 0.90934 0.91823 0.94276 0.94146 0.77178 0.87793 0.88530 0.91012 0.88895 0.86723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.91 71.98 0.71 -2.45 16 2 C -0.12 -3.34 5.82 30.59 0.18 -3.16 16 3 C -0.12 -2.63 4.89 30.59 0.15 -2.48 16 4 C 0.15 3.86 2.27 44.99 0.10 3.96 16 5 H 0.07 2.06 5.28 -2.39 -0.01 2.05 16 6 C -0.12 -2.61 5.61 30.60 0.17 -2.44 16 7 C -0.15 -3.66 9.85 71.98 0.71 -2.96 16 8 N -0.74 -22.93 3.88 -318.54 -1.24 -24.16 16 9 C 0.13 5.56 6.66 38.67 0.26 5.82 16 10 C -0.18 -8.25 9.22 22.15 0.20 -8.04 16 11 C -0.14 -7.43 8.61 22.48 0.19 -7.23 16 12 C 0.03 1.63 5.56 -21.27 -0.12 1.51 16 13 C -0.51 -29.14 9.04 23.38 0.21 -28.93 16 14 H 0.06 3.62 7.88 -2.91 -0.02 3.59 16 15 C 0.03 1.57 5.20 85.23 0.44 2.01 16 16 N -0.85 -47.47 10.88 21.82 0.24 -47.24 16 17 Si 0.98 41.19 29.58 68.60 2.03 43.22 16 18 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 19 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 20 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 21 C -0.19 -9.75 9.74 22.47 0.22 -9.53 16 22 C -0.17 -7.67 9.82 22.15 0.22 -7.45 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.04 1.35 7.75 -2.39 -0.02 1.33 16 27 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.04 1.16 7.64 -2.39 -0.02 1.14 16 34 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.39 10.73 8.83 -92.71 -0.82 9.91 16 36 H 0.10 4.47 5.74 -2.91 -0.02 4.45 16 37 H 0.10 5.61 6.19 -2.91 -0.02 5.59 16 38 H 0.28 14.33 8.30 -92.71 -0.77 13.56 16 39 H 0.09 4.52 8.06 -2.91 -0.02 4.49 16 40 H 0.11 4.29 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -61.70 323.01 4.87 -56.83 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.18 Total: 32.73 kcal Atomic # 6 Polarization: -65.03 SS G_CDS: 3.65 Total: -61.38 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -1.00 Total: -71.40 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -61.70 4.87 -56.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133165671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.995 kcal (2) G-P(sol) polarization free energy of solvation -61.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds