Wall clock time and date at job start Mon Mar 30 2020 06:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 N 1.46498 * 109.47120 * 240.00144 * 2 1 3 5 5 C 1.36935 * 120.00239 * 84.99640 * 4 2 1 6 6 H 1.08004 * 120.00069 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00368 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 359.72375 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72270 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72118 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72153 * 9 7 5 13 13 C 1.50700 * 109.47215 * 119.99986 * 2 1 3 14 14 C 1.38233 * 119.99883 * 79.72679 * 13 2 1 15 15 C 1.38237 * 119.99922 * 179.78576 * 14 13 2 16 16 C 1.38238 * 119.99748 * 0.46806 * 15 14 13 17 17 C 1.50705 * 119.99749 * 179.79126 * 16 15 14 18 18 C 1.53001 * 109.46614 * 239.97155 * 17 16 15 19 19 C 1.53000 * 109.47049 * 359.97278 * 17 16 15 20 20 C 1.53001 * 109.47168 * 119.97596 * 17 16 15 21 21 C 1.38233 * 120.00003 * 359.76090 * 16 15 14 22 22 C 1.38231 * 119.99889 * 259.99611 * 13 2 1 23 23 H 1.09003 * 109.46933 * 300.00179 * 1 2 3 24 24 H 1.09004 * 109.47411 * 59.99789 * 1 2 3 25 25 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 26 26 H 0.97004 * 119.99747 * 265.00379 * 4 2 1 27 27 H 0.97000 * 120.00481 * 0.27542 * 8 7 5 28 28 H 1.07999 * 119.99865 * 359.97438 * 14 13 2 29 29 H 1.07995 * 119.99858 * 180.24793 * 15 14 13 30 30 H 1.09003 * 109.47033 * 60.00121 * 18 17 16 31 31 H 1.09004 * 109.46816 * 179.97438 * 18 17 16 32 32 H 1.09003 * 109.47223 * 299.99983 * 18 17 16 33 33 H 1.08998 * 109.47132 * 60.00285 * 19 17 16 34 34 H 1.09003 * 109.46608 * 180.02562 * 19 17 16 35 35 H 1.09003 * 109.46716 * 300.00035 * 19 17 16 36 36 H 1.08991 * 109.47089 * 59.99306 * 20 17 16 37 37 H 1.08995 * 109.47152 * 179.97438 * 20 17 16 38 38 H 1.09003 * 109.46428 * 299.99436 * 20 17 16 39 39 H 1.07998 * 119.99885 * 180.02562 * 21 16 15 40 40 H 1.08002 * 120.00241 * 359.97438 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4242 7 6 2.6112 -0.6619 -3.5093 8 7 2.9290 -1.9378 -3.4489 9 14 2.7902 0.2701 -5.1183 10 1 1.5246 0.1742 -5.8892 11 1 3.0895 1.6964 -4.8334 12 1 3.8987 -0.3195 -5.9112 13 6 2.0323 -0.7104 1.2305 14 6 2.0614 -2.0919 1.2674 15 6 2.5264 -2.7435 2.3944 16 6 2.9531 -2.0137 3.4881 17 6 3.4556 -2.7241 4.7185 18 6 2.5845 -2.3448 5.9178 19 6 3.3885 -4.2366 4.4973 20 6 4.9040 -2.3121 4.9897 21 6 2.9196 -0.6322 3.4529 22 6 2.4588 0.0194 2.3242 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 2.2489 -1.6318 -1.1526 27 1 2.8364 -2.4217 -2.6134 28 1 1.7237 -2.6621 0.4147 29 1 2.5528 -3.8228 2.4218 30 1 1.5527 -2.6383 5.7246 31 1 2.9476 -2.8590 6.8077 32 1 2.6324 -1.2673 6.0753 33 1 4.0091 -4.5067 3.6429 34 1 3.7515 -4.7504 5.3875 35 1 2.3566 -4.5300 4.3042 36 1 4.9518 -1.2347 5.1471 37 1 5.2672 -2.8256 5.8798 38 1 5.5245 -2.5823 4.1352 39 1 3.2534 -0.0620 4.3072 40 1 2.4323 1.0988 2.2968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154364995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:07 Heat of formation + Delta-G solvation = 14.156001 kcal Electronic energy + Delta-G solvation = -17906.665582 eV Core-core repulsion = 15299.713997 eV Total energy + Delta-G solvation = -2606.951586 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.75332 -37.05763 -34.83915 -32.20714 -30.82476 -29.02591 -27.79715 -27.37625 -27.32023 -23.95904 -22.93409 -21.95082 -20.27841 -18.95442 -17.38997 -16.47999 -15.10996 -14.99692 -14.47948 -14.31342 -13.82245 -13.59418 -13.35081 -13.17160 -13.04363 -12.96598 -12.51438 -12.18739 -11.91579 -11.79722 -11.70227 -11.32541 -11.22719 -10.92897 -10.86029 -10.68974 -10.50147 -10.23581 -10.09798 -9.97379 -9.17453 -8.93543 -8.55121 -8.11924 -7.02047 -6.08261 -3.07407 1.71738 1.76808 3.52977 3.58122 3.71993 4.10339 4.61602 4.69505 4.73810 4.95752 5.24932 5.27625 5.31393 5.39872 5.48020 5.52283 5.59703 5.68006 5.68383 5.76365 5.78302 5.79682 5.93977 5.98057 6.00374 6.03983 6.22234 6.24063 6.29505 6.37727 6.40859 6.50068 6.66244 6.79938 6.90262 6.97091 7.19371 7.38295 7.83672 8.77647 9.24761 10.11061 10.26522 11.40213 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035555 B = 0.004828 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.316718 B = 5798.206336 C = 6087.887279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.211 3.789 3 H 0.055 0.945 4 N -0.733 5.733 5 C -0.329 4.329 6 H 0.065 0.935 7 C -0.045 4.045 8 N -0.944 5.944 9 Si 1.083 2.917 10 H -0.296 1.296 11 H -0.295 1.295 12 H -0.288 1.288 13 C -0.070 4.070 14 C -0.106 4.106 15 C -0.120 4.120 16 C -0.087 4.087 17 C -0.027 4.027 18 C -0.136 4.136 19 C -0.144 4.144 20 C -0.138 4.138 21 C -0.117 4.117 22 C -0.117 4.117 23 H 0.038 0.962 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.368 0.632 27 H 0.254 0.746 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.114 0.886 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.332 -0.730 18.130 18.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.102 3.898 3 H 0.073 0.927 4 N -0.377 5.377 5 C -0.460 4.460 6 H 0.083 0.917 7 C -0.243 4.243 8 N -0.590 5.590 9 Si 0.914 3.086 10 H -0.223 1.223 11 H -0.222 1.222 12 H -0.214 1.214 13 C -0.071 4.071 14 C -0.124 4.124 15 C -0.138 4.138 16 C -0.087 4.087 17 C -0.027 4.027 18 C -0.194 4.194 19 C -0.201 4.201 20 C -0.195 4.195 21 C -0.135 4.135 22 C -0.136 4.136 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.202 0.798 27 H 0.066 0.934 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.090 -0.621 16.484 16.496 hybrid contribution -0.444 -0.082 1.553 1.617 sum -0.354 -0.703 18.036 18.054 Atomic orbital electron populations 1.22392 0.98325 1.00978 1.00101 1.19143 0.91983 0.94869 0.83854 0.92737 1.42532 1.79335 1.09872 1.05927 1.20086 1.41805 0.95201 0.88937 0.91674 1.25763 0.99374 0.97532 1.01610 1.70845 1.51285 1.08455 1.28413 0.83193 0.76453 0.73830 0.75143 1.22337 1.22161 1.21409 1.20423 0.96866 0.94030 0.95757 1.21009 0.99383 0.94363 0.97689 1.21108 0.99808 0.99706 0.93178 1.19647 1.00508 0.93486 0.95034 1.19443 0.95378 0.94942 0.92930 1.21877 0.99554 1.01383 0.96554 1.21957 1.02032 0.94462 1.01626 1.21883 0.94950 1.01313 1.01351 1.20815 1.00971 0.93807 0.97931 1.20968 0.99877 0.99522 0.93234 0.94277 0.92464 0.93520 0.79774 0.93433 0.86171 0.86140 0.92579 0.92697 0.92536 0.92165 0.92697 0.92301 0.92527 0.92689 0.92427 0.86808 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.47 37.16 0.35 -2.67 16 2 C 0.21 4.46 3.09 -69.09 -0.21 4.24 16 3 H 0.05 1.17 7.94 -51.93 -0.41 0.76 16 4 N -0.73 -18.85 5.07 -54.55 -0.28 -19.13 16 5 C -0.33 -9.41 9.93 -15.06 -0.15 -9.56 16 6 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 7 C -0.05 -1.34 5.50 -17.43 -0.10 -1.43 16 8 N -0.94 -29.61 13.70 55.49 0.76 -28.85 16 9 Si 1.08 26.31 29.92 -169.99 -5.09 21.23 16 10 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 C -0.07 -1.30 4.95 -104.63 -0.52 -1.82 16 14 C -0.11 -1.91 9.05 -39.58 -0.36 -2.27 16 15 C -0.12 -1.85 8.98 -39.58 -0.36 -2.20 16 16 C -0.09 -1.20 4.76 -104.62 -0.50 -1.70 16 17 C -0.03 -0.30 0.85 -155.66 -0.13 -0.43 16 18 C -0.14 -1.31 8.29 37.16 0.31 -1.00 16 19 C -0.14 -1.45 7.13 37.16 0.27 -1.19 16 20 C -0.14 -1.41 8.29 37.16 0.31 -1.10 16 21 C -0.12 -1.66 8.71 -39.58 -0.34 -2.01 16 22 C -0.12 -1.90 9.67 -39.58 -0.38 -2.28 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.37 9.70 4.91 -40.82 -0.20 9.50 16 27 H 0.25 7.88 6.77 -40.82 -0.28 7.61 16 28 H 0.12 2.28 6.93 -52.49 -0.36 1.91 16 29 H 0.12 1.63 5.90 -52.49 -0.31 1.32 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.53 7.39 -51.93 -0.38 0.15 16 33 H 0.06 0.64 7.51 -51.93 -0.39 0.25 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.59 7.51 -51.93 -0.39 0.20 16 36 H 0.06 0.56 7.39 -51.93 -0.38 0.18 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.11 1.35 7.10 -52.49 -0.37 0.98 16 40 H 0.12 1.70 8.04 -52.49 -0.42 1.28 16 LS Contribution 319.04 15.07 4.81 4.81 Total: -1.00 -31.41 319.04 -8.10 -39.52 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.49 Total: 7.85 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -1.82 Total: -25.42 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.48 Total: -47.98 kcal Atomic # 14 Polarization: 26.31 SS G_CDS: -5.09 Total: 21.23 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.41 -8.10 -39.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154364995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.674 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds