Wall clock time and date at job start Mon Mar 30 2020 06:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46832 * 2 1 4 4 N 1.46494 * 109.47094 * 120.00278 * 2 1 3 5 5 C 1.36936 * 119.99953 * 274.99749 * 4 2 1 6 6 H 1.08009 * 120.00042 * 0.02562 * 5 4 2 7 7 C 1.38814 * 120.00137 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99889 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99835 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47345 * 60.00273 * 9 7 5 11 11 H 1.48504 * 109.46905 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47200 * 299.99780 * 9 7 5 13 13 C 1.50704 * 109.46910 * 240.00551 * 2 1 3 14 14 C 1.38234 * 120.00277 * 100.00070 * 13 2 1 15 15 C 1.38230 * 119.99885 * 180.02562 * 14 13 2 16 16 C 1.38235 * 120.00326 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00236 * 179.70551 * 16 15 14 18 18 C 1.52995 * 109.47064 * 59.99808 * 17 16 15 19 19 C 1.53003 * 109.46956 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.46805 * 299.99784 * 17 16 15 21 21 C 1.38234 * 119.99814 * 359.97438 * 16 15 14 22 22 C 1.38235 * 119.99518 * 280.01753 * 13 2 1 23 23 H 1.08999 * 109.47372 * 60.00004 * 1 2 3 24 24 H 1.09004 * 109.46832 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47062 * 299.99910 * 1 2 3 26 26 H 0.96995 * 120.00405 * 95.00331 * 4 2 1 27 27 H 0.96999 * 119.99902 * 179.97438 * 8 7 5 28 28 H 1.07992 * 119.99701 * 359.97438 * 14 13 2 29 29 H 1.08000 * 120.00356 * 179.97438 * 15 14 13 30 30 H 1.08996 * 109.47239 * 60.00747 * 18 17 16 31 31 H 1.09007 * 109.46699 * 179.97438 * 18 17 16 32 32 H 1.08997 * 109.47299 * 299.99551 * 18 17 16 33 33 H 1.09001 * 109.47400 * 59.99825 * 19 17 16 34 34 H 1.09003 * 109.46769 * 179.97438 * 19 17 16 35 35 H 1.09001 * 109.46782 * 299.99106 * 19 17 16 36 36 H 1.08996 * 109.47277 * 59.99986 * 20 17 16 37 37 H 1.08994 * 109.46996 * 180.02562 * 20 17 16 38 38 H 1.09001 * 109.47339 * 300.00045 * 20 17 16 39 39 H 1.08001 * 120.00299 * 179.97438 * 21 16 15 40 40 H 1.07997 * 120.00423 * 359.97438 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6124 -0.6618 3.5089 8 7 2.9263 -1.9386 3.4496 9 14 2.7902 0.2699 5.1182 10 1 1.4674 0.8056 5.5288 11 1 3.3004 -0.6482 6.1680 12 1 3.7446 1.3931 4.9371 13 6 2.0324 -0.7103 -1.2306 14 6 2.4587 0.0196 -2.3244 15 6 2.9190 -0.6321 -3.4532 16 6 2.9533 -2.0135 -3.4882 17 6 3.4488 -2.7240 -4.7214 18 6 4.8951 -2.3111 -5.0014 19 6 3.3834 -4.2365 -4.4996 20 6 2.5702 -2.3458 -5.9155 21 6 2.5279 -2.7434 -2.3941 22 6 2.0663 -2.0918 -1.2656 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.2491 -1.6317 1.1525 27 1 3.2504 -2.3957 4.2414 28 1 2.4315 1.0988 -2.2972 29 1 3.2517 -0.0619 -4.3080 30 1 5.5211 -2.5806 -4.1508 31 1 5.2536 -2.8254 -5.8932 32 1 4.9413 -1.2337 -5.1597 33 1 2.3528 -4.5303 -4.3003 34 1 3.7414 -4.7503 -5.3917 35 1 4.0092 -4.5062 -3.6488 36 1 2.6163 -1.2684 -6.0737 37 1 2.9282 -2.8600 -6.8074 38 1 1.5397 -2.6399 -5.7161 39 1 2.5543 -3.8227 -2.4215 40 1 1.7334 -2.6621 -0.4111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154365101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:10 Heat of formation + Delta-G solvation = 14.076528 kcal Electronic energy + Delta-G solvation = -17862.074715 eV Core-core repulsion = 15255.119683 eV Total energy + Delta-G solvation = -2606.955032 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.67050 -36.95589 -34.63455 -32.01913 -30.74086 -29.16408 -27.85502 -27.32841 -27.27520 -24.10923 -22.84812 -21.88951 -20.09183 -18.86619 -17.37622 -16.17580 -15.11674 -14.70191 -14.39792 -14.25859 -13.98358 -13.62983 -13.23492 -13.01996 -12.89169 -12.66143 -12.46453 -12.05996 -11.85228 -11.75709 -11.67817 -11.28275 -11.19759 -10.88303 -10.80955 -10.76455 -10.63047 -10.27528 -10.21308 -9.90284 -9.61934 -8.92298 -8.46092 -8.03768 -6.94724 -5.74563 -3.02934 1.80267 1.86044 3.45634 3.49800 3.50848 4.19027 4.61757 4.67563 4.79241 5.01049 5.32392 5.34192 5.39102 5.48521 5.53211 5.56690 5.60230 5.72734 5.78420 5.82788 5.83786 5.87663 6.01386 6.04680 6.06818 6.12246 6.28641 6.29045 6.37628 6.46577 6.51314 6.61515 6.74086 6.88843 6.98769 7.05825 7.29220 7.47486 7.71611 8.44145 9.55166 10.12256 10.47700 11.48246 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035401 B = 0.004811 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.750239 B = 5818.104509 C = 6112.684678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.205 3.795 3 H 0.054 0.946 4 N -0.722 5.722 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.068 4.068 14 C -0.118 4.118 15 C -0.119 4.119 16 C -0.088 4.088 17 C -0.027 4.027 18 C -0.138 4.138 19 C -0.143 4.143 20 C -0.136 4.136 21 C -0.121 4.121 22 C -0.102 4.102 23 H 0.037 0.963 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.385 0.615 27 H 0.255 0.745 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.120 0.880 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.262 -1.243 -17.921 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.096 3.904 3 H 0.071 0.929 4 N -0.364 5.364 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.069 4.069 14 C -0.137 4.137 15 C -0.137 4.137 16 C -0.088 4.088 17 C -0.027 4.027 18 C -0.195 4.195 19 C -0.201 4.201 20 C -0.194 4.194 21 C -0.139 4.139 22 C -0.121 4.121 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.220 0.780 27 H 0.065 0.935 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.138 0.862 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.239 -1.131 -17.757 17.795 hybrid contribution 0.198 0.182 1.028 1.063 sum -0.042 -0.949 -16.729 16.756 Atomic orbital electron populations 1.22412 0.98424 1.01057 0.99975 1.19212 0.91988 0.94894 0.84324 0.92851 1.42520 1.78196 1.10730 1.04938 1.19215 1.36587 0.93959 0.87227 0.91176 1.24728 1.02118 0.95993 0.98046 1.69651 1.50829 1.08705 1.28999 0.86267 0.77773 0.78606 0.83544 1.21271 1.21705 1.21288 1.20407 0.96816 0.94049 0.95665 1.20959 0.99970 0.99463 0.93285 1.20792 1.01185 0.93793 0.97934 1.19631 1.00651 0.93486 0.95005 1.19435 0.95344 0.94934 0.92960 1.21881 0.95034 1.01275 1.01290 1.21957 1.02048 0.94484 1.01575 1.21874 0.99529 1.01359 0.96592 1.21110 0.99897 0.99675 0.93210 1.21058 0.98968 0.94398 0.97636 0.94399 0.93389 0.92546 0.78006 0.93469 0.86563 0.86941 0.92420 0.92772 0.92540 0.92291 0.92784 0.92144 0.92557 0.92770 0.92584 0.86211 0.85789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.47 37.16 0.35 -2.64 16 2 C 0.21 4.29 3.09 -69.08 -0.21 4.07 16 3 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 4 N -0.72 -18.50 5.07 -54.55 -0.28 -18.77 16 5 C -0.24 -6.71 9.93 -15.06 -0.15 -6.86 16 6 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 9 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 C -0.07 -1.27 4.95 -104.62 -0.52 -1.79 16 14 C -0.12 -1.91 9.67 -39.59 -0.38 -2.29 16 15 C -0.12 -1.70 8.71 -39.59 -0.34 -2.05 16 16 C -0.09 -1.23 4.76 -104.62 -0.50 -1.73 16 17 C -0.03 -0.30 0.85 -155.66 -0.13 -0.43 16 18 C -0.14 -1.43 8.29 37.16 0.31 -1.12 16 19 C -0.14 -1.47 7.13 37.16 0.27 -1.21 16 20 C -0.14 -1.33 8.29 37.16 0.31 -1.02 16 21 C -0.12 -1.88 8.98 -39.58 -0.36 -2.24 16 22 C -0.10 -1.86 9.06 -39.58 -0.36 -2.22 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.38 10.38 6.07 -40.82 -0.25 10.13 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.12 1.68 8.04 -52.49 -0.42 1.26 16 29 H 0.11 1.35 7.10 -52.49 -0.37 0.98 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.06 0.57 7.38 -51.93 -0.38 0.19 16 33 H 0.06 0.60 7.51 -51.93 -0.39 0.21 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.65 7.52 -51.93 -0.39 0.26 16 36 H 0.06 0.53 7.40 -51.93 -0.38 0.15 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.12 1.65 5.90 -52.49 -0.31 1.34 16 40 H 0.12 2.40 6.92 -52.49 -0.36 2.04 16 LS Contribution 320.72 15.07 4.83 4.83 Total: -1.00 -30.21 320.72 -8.16 -38.37 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.60 Total: 7.73 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -1.82 Total: -21.99 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.45 Total: -46.49 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.21 -8.16 -38.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154365101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.446 kcal (2) G-P(sol) polarization free energy of solvation -30.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds