Wall clock time and date at job start Mon Mar 30 2020 06:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46832 * 2 1 4 4 N 1.46494 * 109.47094 * 120.00278 * 2 1 3 5 5 C 1.36936 * 119.99953 * 274.99749 * 4 2 1 6 6 H 1.08009 * 120.00042 * 0.02562 * 5 4 2 7 7 C 1.38814 * 120.00137 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99889 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99835 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47345 * 60.00273 * 9 7 5 11 11 H 1.48504 * 109.46905 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47200 * 299.99780 * 9 7 5 13 13 C 1.50704 * 109.46910 * 240.00551 * 2 1 3 14 14 C 1.38234 * 120.00277 * 100.00070 * 13 2 1 15 15 C 1.38230 * 119.99885 * 180.02562 * 14 13 2 16 16 C 1.38235 * 120.00326 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00236 * 179.70551 * 16 15 14 18 18 C 1.52995 * 109.47064 * 59.99808 * 17 16 15 19 19 C 1.53003 * 109.46956 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.46805 * 299.99784 * 17 16 15 21 21 C 1.38234 * 119.99814 * 359.97438 * 16 15 14 22 22 C 1.38235 * 119.99518 * 280.01753 * 13 2 1 23 23 H 1.08999 * 109.47372 * 60.00004 * 1 2 3 24 24 H 1.09004 * 109.46832 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47062 * 299.99910 * 1 2 3 26 26 H 0.96995 * 120.00405 * 95.00331 * 4 2 1 27 27 H 0.96999 * 119.99902 * 179.97438 * 8 7 5 28 28 H 1.07992 * 119.99701 * 359.97438 * 14 13 2 29 29 H 1.08000 * 120.00356 * 179.97438 * 15 14 13 30 30 H 1.08996 * 109.47239 * 60.00747 * 18 17 16 31 31 H 1.09007 * 109.46699 * 179.97438 * 18 17 16 32 32 H 1.08997 * 109.47299 * 299.99551 * 18 17 16 33 33 H 1.09001 * 109.47400 * 59.99825 * 19 17 16 34 34 H 1.09003 * 109.46769 * 179.97438 * 19 17 16 35 35 H 1.09001 * 109.46782 * 299.99106 * 19 17 16 36 36 H 1.08996 * 109.47277 * 59.99986 * 20 17 16 37 37 H 1.08994 * 109.46996 * 180.02562 * 20 17 16 38 38 H 1.09001 * 109.47339 * 300.00045 * 20 17 16 39 39 H 1.08001 * 120.00299 * 179.97438 * 21 16 15 40 40 H 1.07997 * 120.00423 * 359.97438 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6124 -0.6618 3.5089 8 7 2.9263 -1.9386 3.4496 9 14 2.7902 0.2699 5.1182 10 1 1.4674 0.8056 5.5288 11 1 3.3004 -0.6482 6.1680 12 1 3.7446 1.3931 4.9371 13 6 2.0324 -0.7103 -1.2306 14 6 2.4587 0.0196 -2.3244 15 6 2.9190 -0.6321 -3.4532 16 6 2.9533 -2.0135 -3.4882 17 6 3.4488 -2.7240 -4.7214 18 6 4.8951 -2.3111 -5.0014 19 6 3.3834 -4.2365 -4.4996 20 6 2.5702 -2.3458 -5.9155 21 6 2.5279 -2.7434 -2.3941 22 6 2.0663 -2.0918 -1.2656 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.2491 -1.6317 1.1525 27 1 3.2504 -2.3957 4.2414 28 1 2.4315 1.0988 -2.2972 29 1 3.2517 -0.0619 -4.3080 30 1 5.5211 -2.5806 -4.1508 31 1 5.2536 -2.8254 -5.8932 32 1 4.9413 -1.2337 -5.1597 33 1 2.3528 -4.5303 -4.3003 34 1 3.7414 -4.7503 -5.3917 35 1 4.0092 -4.5062 -3.6488 36 1 2.6163 -1.2684 -6.0737 37 1 2.9282 -2.8600 -6.8074 38 1 1.5397 -2.6399 -5.7161 39 1 2.5543 -3.8227 -2.4215 40 1 1.7334 -2.6621 -0.4111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154365101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:10 Heat of formation + Delta-G solvation = -1.639996 kcal Electronic energy + Delta-G solvation = -17862.756234 eV Core-core repulsion = 15255.119683 eV Total energy + Delta-G solvation = -2607.636552 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.86016 -38.23867 -36.20522 -33.92055 -31.97668 -30.88064 -29.35925 -28.19110 -28.03610 -26.04290 -24.30256 -23.15790 -21.53674 -19.95673 -19.37188 -17.49311 -16.73100 -16.09767 -15.84444 -15.50481 -15.13068 -15.05943 -14.52888 -14.41411 -14.23282 -14.11977 -13.50906 -13.45517 -13.18827 -12.79807 -12.75847 -12.69313 -12.52901 -12.47696 -12.25901 -12.24082 -11.83942 -11.75848 -11.70049 -11.30952 -11.28002 -10.98366 -9.72445 -9.33407 -9.02367 -7.94120 -5.22949 0.53476 0.59324 1.46421 1.49915 1.55825 2.56040 2.93254 3.39886 3.71838 3.86157 3.96961 4.05500 4.17554 4.21141 4.25517 4.45102 4.53000 4.62946 4.70222 4.77510 4.84188 4.86859 4.94787 4.99452 5.05523 5.07681 5.09343 5.12110 5.23213 5.25321 5.32190 5.41927 5.46361 5.49229 5.50752 5.68040 5.81180 5.89253 6.21610 6.27965 7.33613 8.08773 8.33583 9.29575 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.035401 B = 0.004811 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.750239 B = 5818.104509 C = 6112.684678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.201 3.799 3 H 0.051 0.949 4 N -0.735 5.735 5 C -0.242 4.242 6 H 0.077 0.923 7 C -0.076 4.076 8 N -0.972 5.972 9 Si 0.974 3.026 10 H -0.277 1.277 11 H -0.296 1.296 12 H -0.278 1.278 13 C -0.092 4.092 14 C -0.121 4.121 15 C -0.114 4.114 16 C -0.080 4.080 17 C -0.027 4.027 18 C -0.137 4.137 19 C -0.145 4.145 20 C -0.134 4.134 21 C -0.127 4.127 22 C -0.123 4.123 23 H 0.068 0.932 24 H 0.038 0.962 25 H 0.042 0.958 26 H 0.374 0.626 27 H 0.251 0.749 28 H 0.133 0.867 29 H 0.144 0.856 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.133 0.867 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.055 -0.301 -20.224 20.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.093 3.907 3 H 0.069 0.931 4 N -0.376 5.376 5 C -0.374 4.374 6 H 0.095 0.905 7 C -0.268 4.268 8 N -0.622 5.622 9 Si 0.803 3.197 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.204 1.204 13 C -0.093 4.093 14 C -0.140 4.140 15 C -0.132 4.132 16 C -0.080 4.080 17 C -0.027 4.027 18 C -0.194 4.194 19 C -0.202 4.202 20 C -0.191 4.191 21 C -0.145 4.145 22 C -0.141 4.141 23 H 0.087 0.913 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.207 0.793 27 H 0.059 0.941 28 H 0.151 0.849 29 H 0.161 0.839 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.150 0.850 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.053 -0.152 -20.098 20.098 hybrid contribution 0.096 -0.122 1.596 1.603 sum 0.148 -0.274 -18.502 18.505 Atomic orbital electron populations 1.22243 0.96913 1.00746 1.00791 1.19375 0.92954 0.94507 0.83848 0.93054 1.42728 1.78519 1.10425 1.05974 1.19631 1.35141 0.94331 0.88258 0.90535 1.25561 1.02835 0.96904 1.01496 1.69824 1.52566 1.10336 1.29515 0.85202 0.78005 0.77289 0.79215 1.20305 1.22198 1.20396 1.20236 0.99101 0.94182 0.95759 1.21169 0.99453 1.00332 0.93015 1.21133 0.99874 0.94083 0.98110 1.20048 0.98708 0.93752 0.95485 1.19531 0.96135 0.95036 0.92027 1.21884 0.94004 1.01864 1.01656 1.21969 1.01863 0.94197 1.02165 1.21860 0.98838 1.01961 0.96443 1.21287 0.99705 1.00536 0.92930 1.20970 1.00654 0.94500 0.97998 0.91292 0.94254 0.93846 0.79330 0.94067 0.84906 0.83866 0.93820 0.90709 0.92055 0.92508 0.90791 0.93134 0.92028 0.90837 0.93169 0.84968 0.88345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.57 9.47 71.98 0.68 -4.89 16 2 C 0.20 8.51 3.09 44.25 0.14 8.64 16 3 H 0.05 2.16 7.94 -2.39 -0.02 2.14 16 4 N -0.74 -38.88 5.07 -326.48 -1.66 -40.54 16 5 C -0.24 -13.83 9.93 84.03 0.83 -13.00 16 6 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 7 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 8 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 9 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 13 C -0.09 -3.44 4.95 -19.86 -0.10 -3.54 16 14 C -0.12 -3.73 9.67 22.27 0.22 -3.52 16 15 C -0.11 -2.97 8.71 22.27 0.19 -2.78 16 16 C -0.08 -2.09 4.76 -19.87 -0.09 -2.19 16 17 C -0.03 -0.53 0.85 -52.93 -0.05 -0.57 16 18 C -0.14 -2.41 8.29 71.98 0.60 -1.81 16 19 C -0.14 -2.65 7.13 71.98 0.51 -2.14 16 20 C -0.13 -2.13 8.29 71.98 0.60 -1.53 16 21 C -0.13 -3.92 8.98 22.27 0.20 -3.72 16 22 C -0.12 -4.61 9.06 22.27 0.20 -4.40 16 23 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.37 21.17 6.07 -92.71 -0.56 20.61 16 27 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.13 3.56 8.04 -2.91 -0.02 3.53 16 29 H 0.14 2.85 7.10 -2.91 -0.02 2.83 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.06 1.02 7.38 -2.39 -0.02 1.00 16 33 H 0.06 1.06 7.51 -2.39 -0.02 1.04 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 1.02 7.52 -2.39 -0.02 1.00 16 36 H 0.06 0.92 7.40 -2.39 -0.02 0.90 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.13 3.64 5.90 -2.91 -0.02 3.62 16 40 H 0.10 4.11 6.92 -2.91 -0.02 4.09 16 Total: -1.00 -65.75 320.72 5.49 -60.26 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.44 Total: 31.40 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 4.40 Total: -39.45 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -1.37 Total: -101.26 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -65.75 5.49 -60.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154365101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.616 kcal (2) G-P(sol) polarization free energy of solvation -65.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds