Wall clock time and date at job start Mon Mar 30 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47266 * 2 1 4 4 H 1.09002 * 109.46808 * 305.62569 * 3 2 1 5 5 N 1.46891 * 109.47364 * 65.62748 * 3 2 1 6 6 C 1.46898 * 111.00506 * 205.45159 * 5 3 2 7 7 H 1.09007 * 109.46621 * 326.69764 * 6 5 3 8 8 C 1.52995 * 109.46894 * 86.69218 * 6 5 3 9 9 C 1.50693 * 109.47533 * 206.69685 * 6 5 3 10 10 H 1.08001 * 119.99789 * 359.97438 * 9 6 5 11 11 C 1.37876 * 120.00302 * 180.02562 * 9 6 5 12 12 N 1.31516 * 119.99870 * 359.97438 * 11 9 6 13 13 Si 1.86801 * 120.00258 * 179.97438 * 11 9 6 14 14 H 1.48502 * 109.47022 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46881 * 119.99596 * 13 11 9 16 16 H 1.48493 * 109.47121 * 239.99567 * 13 11 9 17 17 C 1.50704 * 109.47110 * 185.62836 * 3 2 1 18 18 C 1.38234 * 119.99926 * 279.72566 * 17 3 2 19 19 C 1.38236 * 119.99604 * 179.78924 * 18 17 3 20 20 C 1.38239 * 120.00283 * 0.46337 * 19 18 17 21 21 C 1.50696 * 119.99781 * 179.79502 * 20 19 18 22 22 C 1.38235 * 119.99885 * 359.76539 * 20 19 18 23 23 C 1.38241 * 119.99586 * 99.99715 * 17 3 2 24 24 H 1.09001 * 109.47148 * 62.09543 * 1 2 3 25 25 H 1.09002 * 109.47422 * 182.09920 * 1 2 3 26 26 H 1.09004 * 109.47018 * 302.09793 * 1 2 3 27 27 H 1.09005 * 109.46937 * 239.99752 * 2 1 3 28 28 H 1.08998 * 109.47384 * 120.00005 * 2 1 3 29 29 H 1.00900 * 110.99902 * 329.41031 * 5 3 2 30 30 H 1.09004 * 109.47283 * 185.58231 * 8 6 5 31 31 H 1.08998 * 109.47783 * 305.58258 * 8 6 5 32 32 H 1.08999 * 109.47602 * 65.58118 * 8 6 5 33 33 H 0.96999 * 119.99875 * 180.02562 * 12 11 9 34 34 H 1.07994 * 119.99782 * 0.02562 * 18 17 3 35 35 H 1.08007 * 119.99774 * 180.25603 * 19 18 17 36 36 H 1.09000 * 109.46811 * 269.97189 * 21 20 19 37 37 H 1.08996 * 109.47636 * 29.97541 * 21 20 19 38 38 H 1.09001 * 109.46795 * 149.97744 * 21 20 19 39 39 H 1.07997 * 120.00091 * 179.97438 * 22 20 19 40 40 H 1.07993 * 120.00481 * 359.97438 * 23 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9845 -0.8354 5 7 1.6644 2.0947 1.2615 6 6 1.5735 3.5513 1.0944 7 1 2.3111 3.8797 0.3621 8 6 0.1713 3.9222 0.6076 9 6 1.8417 4.2261 2.4149 10 1 2.0577 3.6323 3.2907 11 6 1.8103 5.6016 2.5051 12 7 1.5468 6.3247 1.4387 13 14 2.1420 6.4381 4.1421 14 1 2.4097 5.4089 5.1786 15 1 3.3228 7.3293 4.0122 16 1 0.9569 7.2410 4.5368 17 6 3.5406 1.4447 -0.1394 18 6 4.3376 1.2051 0.9644 19 6 5.7139 1.2028 0.8356 20 6 6.2935 1.4497 -0.3949 21 6 7.7940 1.4518 -0.5342 22 6 5.4965 1.6941 -1.4977 23 6 4.1201 1.6920 -1.3698 24 1 -0.3633 0.4809 -0.9082 25 1 -0.3634 -1.0270 0.0376 26 1 -0.3633 0.5461 0.8706 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.8003 1.7172 1.6204 30 1 0.1330 4.9894 0.3889 31 1 -0.0610 3.3577 -0.2955 32 1 -0.5573 3.6837 1.3824 33 1 1.5251 7.2924 1.5021 34 1 3.8849 1.0158 1.9264 35 1 6.3366 1.0115 1.6971 36 1 8.1738 2.4582 -0.3579 37 1 8.2276 0.7670 0.1945 38 1 8.0659 1.1319 -1.5401 39 1 5.9493 1.8874 -2.4589 40 1 3.4975 1.8832 -2.2313 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170806960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:34 Heat of formation + Delta-G solvation = 5.878512 kcal Electronic energy + Delta-G solvation = -18205.387502 eV Core-core repulsion = 15598.076977 eV Total energy + Delta-G solvation = -2607.310525 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.18253 -36.77401 -33.80909 -32.06471 -31.35065 -30.39870 -28.34992 -26.61089 -25.08466 -24.05032 -22.22153 -21.17948 -20.38061 -19.43878 -16.27688 -15.78781 -15.33706 -14.77790 -14.56724 -14.19784 -14.05185 -13.46843 -13.13144 -12.94829 -12.86079 -12.38035 -12.24457 -11.96886 -11.71378 -11.58707 -11.39447 -11.01250 -10.96670 -10.82726 -10.59393 -10.50317 -10.29421 -10.23206 -10.03471 -9.78515 -8.91839 -8.38373 -8.31973 -7.95549 -7.22170 -5.93636 -3.95583 1.84208 1.95535 3.34031 3.41676 3.46729 4.25541 4.48035 5.04679 5.17742 5.26838 5.31036 5.38843 5.40979 5.50356 5.52910 5.66573 5.75468 5.78110 5.97480 6.02082 6.07707 6.12357 6.17460 6.22555 6.41294 6.52939 6.59076 6.64482 6.73058 6.87235 6.94234 7.05489 7.14757 7.23346 7.48257 7.55799 7.77025 7.94538 8.33200 8.61065 8.67197 9.11384 9.69253 11.14038 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016166 B = 0.007761 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.644102 B = 3606.794030 C = 4731.105365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C 0.123 3.877 4 H 0.043 0.957 5 N -0.677 5.677 6 C 0.213 3.787 7 H 0.033 0.967 8 C -0.166 4.166 9 C -0.490 4.490 10 H 0.062 0.938 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.894 3.106 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.286 1.286 17 C -0.061 4.061 18 C -0.072 4.072 19 C -0.129 4.129 20 C -0.101 4.101 21 C -0.109 4.109 22 C -0.129 4.129 23 C -0.117 4.117 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.328 0.672 30 H 0.084 0.916 31 H 0.003 0.997 32 H 0.029 0.971 33 H 0.258 0.742 34 H 0.130 0.870 35 H 0.114 0.886 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.112 0.888 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.649 -11.376 -4.917 13.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C 0.012 3.988 4 H 0.061 0.939 5 N -0.309 5.309 6 C 0.106 3.894 7 H 0.051 0.949 8 C -0.225 4.225 9 C -0.529 4.529 10 H 0.080 0.920 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.722 3.278 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.213 1.213 17 C -0.062 4.062 18 C -0.090 4.090 19 C -0.147 4.147 20 C -0.101 4.101 21 C -0.166 4.166 22 C -0.147 4.147 23 C -0.136 4.136 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.147 0.853 30 H 0.103 0.897 31 H 0.022 0.978 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.148 0.852 35 H 0.132 0.868 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.130 0.870 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.270 -11.167 -4.717 13.218 hybrid contribution -0.713 0.894 0.276 1.176 sum 4.557 -10.273 -4.440 12.084 Atomic orbital electron populations 1.21826 0.96044 1.01170 1.02091 1.21667 0.95454 0.96463 1.02084 1.20380 0.90821 0.93761 0.93832 0.93894 1.60811 1.38067 1.07397 1.24600 1.19170 0.92226 0.81173 0.96857 0.94891 1.22413 0.99766 1.03891 0.96419 1.21173 1.45902 0.90701 0.95131 0.92002 1.24939 0.95675 0.97485 0.96443 1.69909 1.50347 1.05425 1.28097 0.86502 0.77630 0.79421 0.84207 1.19770 1.21233 1.21284 1.19905 0.95659 0.97807 0.92849 1.21016 0.92408 0.96672 0.98951 1.21010 0.95214 1.02087 0.96418 1.19784 0.95413 1.01071 0.93855 1.20724 0.92109 1.01930 1.01805 1.20811 0.93528 1.02466 0.97872 1.20966 0.94646 1.00745 0.97237 0.93018 0.92965 0.92168 0.92150 0.91297 0.85339 0.89721 0.97754 0.95203 0.93258 0.85193 0.86820 0.91614 0.92042 0.92170 0.86971 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.78 37.16 0.36 -1.67 16 2 C -0.12 -1.72 5.49 -26.73 -0.15 -1.86 16 3 C 0.12 2.20 2.04 -68.87 -0.14 2.06 16 4 H 0.04 0.83 7.09 -51.93 -0.37 0.46 16 5 N -0.68 -14.04 5.28 -102.18 -0.54 -14.58 16 6 C 0.21 5.36 2.37 -68.87 -0.16 5.20 16 7 H 0.03 0.94 7.64 -51.92 -0.40 0.54 16 8 C -0.17 -3.99 8.85 37.16 0.33 -3.66 16 9 C -0.49 -13.64 8.84 -34.44 -0.30 -13.95 16 10 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 11 C 0.05 1.54 5.30 -17.82 -0.09 1.45 16 12 N -0.90 -26.13 11.38 55.43 0.63 -25.50 16 13 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 17 C -0.06 -1.12 4.64 -104.62 -0.49 -1.60 16 18 C -0.07 -1.31 9.33 -39.58 -0.37 -1.67 16 19 C -0.13 -2.10 9.70 -39.58 -0.38 -2.49 16 20 C -0.10 -1.54 5.88 -104.62 -0.62 -2.15 16 21 C -0.11 -1.27 10.01 36.00 0.36 -0.91 16 22 C -0.13 -1.99 9.70 -39.58 -0.38 -2.38 16 23 C -0.12 -1.98 9.67 -39.58 -0.38 -2.36 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.84 6.40 -51.93 -0.33 0.51 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.33 6.42 6.21 -39.29 -0.24 6.17 16 30 H 0.08 2.27 6.24 -51.93 -0.32 1.95 16 31 H 0.00 0.08 7.51 -51.93 -0.39 -0.31 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.13 2.40 7.71 -52.49 -0.40 1.99 16 35 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 38 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 39 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.11 1.73 8.04 -52.49 -0.42 1.31 16 LS Contribution 323.21 15.07 4.87 4.87 Total: -1.00 -29.20 323.21 -9.12 -38.32 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.65 Total: 6.05 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -2.42 Total: -26.01 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.09 Total: -40.08 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.20 -9.12 -38.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.203 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds