Wall clock time and date at job start Mon Mar 30 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47266 * 2 1 4 4 H 1.09002 * 109.46808 * 305.62569 * 3 2 1 5 5 N 1.46891 * 109.47364 * 65.62748 * 3 2 1 6 6 C 1.46898 * 111.00506 * 205.45159 * 5 3 2 7 7 H 1.09007 * 109.46621 * 326.69764 * 6 5 3 8 8 C 1.52995 * 109.46894 * 86.69218 * 6 5 3 9 9 C 1.50693 * 109.47533 * 206.69685 * 6 5 3 10 10 H 1.08001 * 119.99789 * 359.97438 * 9 6 5 11 11 C 1.37876 * 120.00302 * 180.02562 * 9 6 5 12 12 N 1.31516 * 119.99870 * 359.97438 * 11 9 6 13 13 Si 1.86801 * 120.00258 * 179.97438 * 11 9 6 14 14 H 1.48502 * 109.47022 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46881 * 119.99596 * 13 11 9 16 16 H 1.48493 * 109.47121 * 239.99567 * 13 11 9 17 17 C 1.50704 * 109.47110 * 185.62836 * 3 2 1 18 18 C 1.38234 * 119.99926 * 279.72566 * 17 3 2 19 19 C 1.38236 * 119.99604 * 179.78924 * 18 17 3 20 20 C 1.38239 * 120.00283 * 0.46337 * 19 18 17 21 21 C 1.50696 * 119.99781 * 179.79502 * 20 19 18 22 22 C 1.38235 * 119.99885 * 359.76539 * 20 19 18 23 23 C 1.38241 * 119.99586 * 99.99715 * 17 3 2 24 24 H 1.09001 * 109.47148 * 62.09543 * 1 2 3 25 25 H 1.09002 * 109.47422 * 182.09920 * 1 2 3 26 26 H 1.09004 * 109.47018 * 302.09793 * 1 2 3 27 27 H 1.09005 * 109.46937 * 239.99752 * 2 1 3 28 28 H 1.08998 * 109.47384 * 120.00005 * 2 1 3 29 29 H 1.00900 * 110.99902 * 329.41031 * 5 3 2 30 30 H 1.09004 * 109.47283 * 185.58231 * 8 6 5 31 31 H 1.08998 * 109.47783 * 305.58258 * 8 6 5 32 32 H 1.08999 * 109.47602 * 65.58118 * 8 6 5 33 33 H 0.96999 * 119.99875 * 180.02562 * 12 11 9 34 34 H 1.07994 * 119.99782 * 0.02562 * 18 17 3 35 35 H 1.08007 * 119.99774 * 180.25603 * 19 18 17 36 36 H 1.09000 * 109.46811 * 269.97189 * 21 20 19 37 37 H 1.08996 * 109.47636 * 29.97541 * 21 20 19 38 38 H 1.09001 * 109.46795 * 149.97744 * 21 20 19 39 39 H 1.07997 * 120.00091 * 179.97438 * 22 20 19 40 40 H 1.07993 * 120.00481 * 359.97438 * 23 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9845 -0.8354 5 7 1.6644 2.0947 1.2615 6 6 1.5735 3.5513 1.0944 7 1 2.3111 3.8797 0.3621 8 6 0.1713 3.9222 0.6076 9 6 1.8417 4.2261 2.4149 10 1 2.0577 3.6323 3.2907 11 6 1.8103 5.6016 2.5051 12 7 1.5468 6.3247 1.4387 13 14 2.1420 6.4381 4.1421 14 1 2.4097 5.4089 5.1786 15 1 3.3228 7.3293 4.0122 16 1 0.9569 7.2410 4.5368 17 6 3.5406 1.4447 -0.1394 18 6 4.3376 1.2051 0.9644 19 6 5.7139 1.2028 0.8356 20 6 6.2935 1.4497 -0.3949 21 6 7.7940 1.4518 -0.5342 22 6 5.4965 1.6941 -1.4977 23 6 4.1201 1.6920 -1.3698 24 1 -0.3633 0.4809 -0.9082 25 1 -0.3634 -1.0270 0.0376 26 1 -0.3633 0.5461 0.8706 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.8003 1.7172 1.6204 30 1 0.1330 4.9894 0.3889 31 1 -0.0610 3.3577 -0.2955 32 1 -0.5573 3.6837 1.3824 33 1 1.5251 7.2924 1.5021 34 1 3.8849 1.0158 1.9264 35 1 6.3366 1.0115 1.6971 36 1 8.1738 2.4582 -0.3579 37 1 8.2276 0.7670 0.1945 38 1 8.0659 1.1319 -1.5401 39 1 5.9493 1.8874 -2.4589 40 1 3.4975 1.8832 -2.2313 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170806960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:34 Heat of formation + Delta-G solvation = -9.403004 kcal Electronic energy + Delta-G solvation = -18206.050158 eV Core-core repulsion = 15598.076977 eV Total energy + Delta-G solvation = -2607.973181 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.49659 -38.28959 -35.61618 -33.40164 -33.02733 -31.67639 -29.85840 -28.04052 -27.21228 -25.29845 -23.50698 -22.40770 -22.27880 -20.85180 -18.34355 -17.08833 -16.92456 -16.54280 -15.87561 -15.74343 -15.41485 -14.65853 -14.50561 -14.44274 -14.14912 -13.95258 -13.69342 -13.53904 -13.01899 -12.89407 -12.86936 -12.74696 -12.56343 -12.50032 -12.21069 -12.07005 -11.80418 -11.75532 -11.59998 -11.44547 -10.96190 -10.48432 -9.67595 -9.23105 -8.94349 -8.08540 -6.18215 0.56636 0.66204 1.39865 1.41599 1.53743 2.43830 2.96919 3.20426 3.60074 3.97039 4.08680 4.15372 4.21334 4.28843 4.31440 4.48670 4.61649 4.71931 4.75525 4.81489 4.86445 4.88359 4.93969 4.98987 5.05097 5.09493 5.12822 5.22792 5.30721 5.40115 5.43674 5.47667 5.65167 5.71390 5.79999 5.81149 5.97746 6.27866 6.31620 6.69964 6.89457 6.99323 7.51480 8.97737 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016166 B = 0.007761 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.644102 B = 3606.794030 C = 4731.105365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C 0.125 3.875 4 H 0.028 0.972 5 N -0.676 5.676 6 C 0.224 3.776 7 H -0.006 1.006 8 C -0.152 4.152 9 C -0.507 4.507 10 H 0.054 0.946 11 C 0.007 3.993 12 N -0.924 5.924 13 Si 0.956 3.044 14 H -0.268 1.268 15 H -0.284 1.284 16 H -0.280 1.280 17 C -0.085 4.085 18 C -0.094 4.094 19 C -0.139 4.139 20 C -0.104 4.104 21 C -0.107 4.107 22 C -0.132 4.132 23 C -0.132 4.132 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.334 0.666 30 H 0.055 0.945 31 H 0.025 0.975 32 H 0.032 0.968 33 H 0.259 0.741 34 H 0.117 0.883 35 H 0.132 0.868 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.139 0.861 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.526 -12.317 -4.954 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C 0.015 3.985 4 H 0.046 0.954 5 N -0.308 5.308 6 C 0.116 3.884 7 H 0.012 0.988 8 C -0.211 4.211 9 C -0.546 4.546 10 H 0.072 0.928 11 C -0.190 4.190 12 N -0.565 5.565 13 Si 0.783 3.217 14 H -0.192 1.192 15 H -0.211 1.211 16 H -0.205 1.205 17 C -0.085 4.085 18 C -0.112 4.112 19 C -0.156 4.156 20 C -0.104 4.104 21 C -0.163 4.163 22 C -0.150 4.150 23 C -0.151 4.151 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.154 0.846 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.135 0.865 35 H 0.149 0.851 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.157 0.843 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.143 -12.129 -4.754 14.403 hybrid contribution -0.935 1.154 0.237 1.505 sum 5.207 -10.975 -4.516 12.960 Atomic orbital electron populations 1.21808 0.94904 1.02618 1.01496 1.21602 0.96332 0.93985 1.02820 1.20420 0.91133 0.95375 0.91593 0.95444 1.60652 1.38414 1.05142 1.26569 1.18833 0.91424 0.83572 0.94612 0.98824 1.22209 0.99324 1.02199 0.97381 1.21469 1.46001 0.91234 0.95909 0.92788 1.25700 0.95493 0.98152 0.99692 1.70040 1.50952 1.05608 1.29893 0.85527 0.77545 0.78341 0.80337 1.19210 1.21057 1.20535 1.20029 0.95722 0.99127 0.93652 1.21037 0.93538 0.98191 0.98433 1.21289 0.94704 1.01855 0.97801 1.20234 0.97533 0.99482 0.93153 1.20779 0.89327 1.02658 1.03539 1.21185 0.93044 1.01482 0.99299 1.21194 0.95768 1.01010 0.97125 0.93095 0.90468 0.93260 0.90688 0.91195 0.84598 0.92565 0.95646 0.94887 0.93210 0.86506 0.85054 0.91200 0.90592 0.90263 0.84324 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.78 71.98 0.70 -3.05 16 2 C -0.11 -3.06 5.49 30.59 0.17 -2.90 16 3 C 0.12 4.52 2.04 44.17 0.09 4.61 16 4 H 0.03 1.08 7.09 -2.39 -0.02 1.06 16 5 N -0.68 -28.51 5.28 -477.18 -2.52 -31.03 16 6 C 0.22 11.56 2.37 44.17 0.10 11.66 16 7 H -0.01 -0.37 7.64 -2.38 -0.02 -0.38 16 8 C -0.15 -7.43 8.85 71.98 0.64 -6.79 16 9 C -0.51 -28.73 8.84 25.60 0.23 -28.50 16 10 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 11 C 0.01 0.42 5.30 84.65 0.45 0.87 16 12 N -0.92 -54.69 11.38 21.45 0.24 -54.45 16 13 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 14 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 15 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 17 C -0.08 -3.11 4.64 -19.86 -0.09 -3.20 16 18 C -0.09 -3.43 9.33 22.27 0.21 -3.22 16 19 C -0.14 -4.41 9.70 22.27 0.22 -4.19 16 20 C -0.10 -2.98 5.88 -19.87 -0.12 -3.10 16 21 C -0.11 -2.18 10.01 71.23 0.71 -1.47 16 22 C -0.13 -3.90 9.70 22.27 0.22 -3.69 16 23 C -0.13 -4.44 9.67 22.27 0.22 -4.22 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.05 1.33 6.40 -2.39 -0.02 1.31 16 27 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.33 13.16 6.21 -89.69 -0.56 12.60 16 30 H 0.06 3.08 6.24 -2.39 -0.01 3.07 16 31 H 0.02 1.09 7.51 -2.39 -0.02 1.07 16 32 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.12 4.45 7.71 -2.91 -0.02 4.43 16 35 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 38 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 39 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 40 H 0.12 3.71 8.04 -2.91 -0.02 3.68 16 Total: -1.00 -63.15 323.21 3.93 -59.22 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.44 Total: 26.36 kcal Atomic # 6 Polarization: -50.93 SS G_CDS: 3.74 Total: -47.19 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -2.27 Total: -85.48 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -63.15 3.93 -59.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.814 kcal (2) G-P(sol) polarization free energy of solvation -63.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds