Wall clock time and date at job start Mon Mar 30 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47273 * 2 1 4 4 H 1.09008 * 109.46603 * 54.70349 * 3 2 1 5 5 N 1.46899 * 109.46983 * 294.71225 * 3 2 1 6 6 C 1.46907 * 110.99968 * 153.56719 * 5 3 2 7 7 H 1.08995 * 109.47074 * 32.69136 * 6 5 3 8 8 C 1.53001 * 109.46568 * 272.69771 * 6 5 3 9 9 C 1.50698 * 109.47071 * 152.69768 * 6 5 3 10 10 H 1.08001 * 120.00274 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99996 * 179.97438 * 9 6 5 12 12 N 1.31517 * 119.99613 * 0.02562 * 11 9 6 13 13 Si 1.86797 * 120.00003 * 180.02562 * 11 9 6 14 14 H 1.48496 * 109.47100 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47254 * 119.99924 * 13 11 9 16 16 H 1.48507 * 109.46574 * 239.99868 * 13 11 9 17 17 C 1.50693 * 109.47776 * 174.70476 * 3 2 1 18 18 C 1.38238 * 119.99737 * 79.72832 * 17 3 2 19 19 C 1.38237 * 119.99672 * 179.75115 * 18 17 3 20 20 C 1.38230 * 120.00203 * 0.52463 * 19 18 17 21 21 C 1.50696 * 120.00135 * 179.77298 * 20 19 18 22 22 C 1.38240 * 119.99867 * 359.74936 * 20 19 18 23 23 C 1.38230 * 120.00289 * 260.00410 * 17 3 2 24 24 H 1.08995 * 109.47314 * 305.41694 * 1 2 3 25 25 H 1.09003 * 109.47037 * 65.42468 * 1 2 3 26 26 H 1.08998 * 109.46348 * 185.41885 * 1 2 3 27 27 H 1.09004 * 109.47260 * 240.00447 * 2 1 3 28 28 H 1.09000 * 109.47618 * 120.00420 * 2 1 3 29 29 H 1.00905 * 110.99788 * 277.51614 * 5 3 2 30 30 H 1.09007 * 109.46968 * 174.65579 * 8 6 5 31 31 H 1.09009 * 109.46883 * 294.64834 * 8 6 5 32 32 H 1.08991 * 109.47750 * 54.65159 * 8 6 5 33 33 H 0.97001 * 119.99740 * 179.97438 * 12 11 9 34 34 H 1.07994 * 120.00056 * 359.97438 * 18 17 3 35 35 H 1.08003 * 119.99833 * 180.29803 * 19 18 17 36 36 H 1.08997 * 109.47563 * 269.97986 * 21 20 19 37 37 H 1.09004 * 109.47339 * 29.97948 * 21 20 19 38 38 H 1.08997 * 109.47301 * 149.97366 * 21 20 19 39 39 H 1.08002 * 119.99480 * 180.02562 * 22 20 19 40 40 H 1.08000 * 119.99941 * 0.02562 * 23 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6012 1.9830 0.8388 5 7 1.6574 2.0971 -1.2582 6 6 1.5447 3.5513 -1.0820 7 1 2.2684 3.8843 -0.3381 8 6 0.1315 3.8997 -0.6102 9 6 1.8201 4.2391 -2.3942 10 1 2.0558 3.6546 -3.2713 11 6 1.7713 5.6146 -2.4751 12 7 1.4848 6.3264 -1.4070 13 14 2.1120 6.4672 -4.1019 14 1 2.4076 5.4493 -5.1419 15 1 0.9211 7.2569 -4.5059 16 1 3.2789 7.3733 -3.9509 17 6 3.5412 1.4447 0.1311 18 6 4.3320 1.1960 -0.9752 19 6 5.7092 1.2031 -0.8560 20 6 6.2955 1.4480 0.3716 21 6 7.7967 1.4507 0.5026 22 6 5.5046 1.6911 1.4791 23 6 4.1275 1.6896 1.3587 24 1 -0.3634 0.5955 0.8375 25 1 -0.3633 0.4274 -0.9346 26 1 -0.3632 -1.0231 0.0971 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.3081 1.8716 -1.9956 30 1 0.0750 4.9655 -0.3885 31 1 -0.5844 3.6533 -1.3944 32 1 -0.1028 3.3288 0.2882 33 1 1.4508 7.2941 -1.4638 34 1 3.8739 0.9998 -1.9333 35 1 6.3271 1.0136 -1.7213 36 1 8.1423 0.4453 0.7431 37 1 8.2430 1.7728 -0.4383 38 1 8.0909 2.1359 1.2976 39 1 5.9627 1.8828 2.4381 40 1 3.5097 1.8790 2.2240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170806962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:37 Heat of formation + Delta-G solvation = 4.475565 kcal Electronic energy + Delta-G solvation = -18214.159682 eV Core-core repulsion = 15606.788321 eV Total energy + Delta-G solvation = -2607.371361 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.39519 -36.60707 -33.79590 -31.99590 -31.39446 -30.58687 -28.45522 -26.58907 -25.15149 -24.00410 -22.45525 -21.18936 -20.23567 -19.30318 -16.69984 -15.87695 -15.31945 -14.80940 -14.60282 -14.08867 -13.73822 -13.62824 -13.45482 -13.06959 -12.91017 -12.32422 -12.26399 -12.03263 -11.63089 -11.41488 -11.34757 -11.02711 -10.90367 -10.70883 -10.67037 -10.51365 -10.21650 -10.16311 -10.08456 -9.82711 -8.77095 -8.57167 -8.46330 -8.11188 -7.24978 -5.99736 -4.05046 1.69099 1.75847 3.29784 3.37528 3.41423 4.09451 4.42550 5.03416 5.06581 5.21916 5.23459 5.33694 5.33945 5.50832 5.63229 5.65514 5.67806 5.84813 5.88574 5.95250 6.05166 6.15364 6.31002 6.39843 6.41486 6.44377 6.64136 6.76683 6.84600 6.87805 6.93357 7.01943 7.18219 7.29706 7.36941 7.57507 7.81537 7.95203 8.28224 8.42015 8.70704 9.05650 9.60425 11.07097 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.007746 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.979529 B = 3613.741580 C = 4732.611959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C 0.123 3.877 4 H 0.077 0.923 5 N -0.676 5.676 6 C 0.212 3.788 7 H 0.003 0.997 8 C -0.121 4.121 9 C -0.516 4.516 10 H 0.058 0.942 11 C 0.063 3.937 12 N -0.889 5.889 13 Si 0.893 3.107 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.096 4.096 18 C -0.105 4.105 19 C -0.118 4.118 20 C -0.102 4.102 21 C -0.109 4.109 22 C -0.122 4.122 23 C -0.112 4.112 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.331 0.669 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.004 0.996 33 H 0.259 0.741 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.115 0.885 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.490 -10.826 4.651 13.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.140 4.140 3 C 0.011 3.989 4 H 0.096 0.904 5 N -0.307 5.307 6 C 0.105 3.895 7 H 0.021 0.979 8 C -0.179 4.179 9 C -0.555 4.555 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.528 5.528 13 Si 0.721 3.279 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.212 1.212 17 C -0.097 4.097 18 C -0.124 4.124 19 C -0.136 4.136 20 C -0.102 4.102 21 C -0.166 4.166 22 C -0.140 4.140 23 C -0.131 4.131 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.150 0.850 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.023 0.977 33 H 0.069 0.931 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.133 0.867 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.767 -10.728 4.774 13.082 hybrid contribution 1.143 0.981 -0.767 1.690 sum 6.910 -9.748 4.007 12.602 Atomic orbital electron populations 1.21621 0.95411 0.99647 1.02945 1.21460 0.96387 0.95490 1.00668 1.20699 0.87355 0.95244 0.95567 0.90449 1.60964 1.52629 1.12986 1.04153 1.19091 0.93370 0.81058 0.95997 0.97935 1.21698 0.97987 1.01677 0.96537 1.21292 1.47341 0.91473 0.95366 0.92385 1.24898 0.95141 0.97459 0.96411 1.69922 1.48978 1.05894 1.28024 0.86519 0.77788 0.79557 0.84004 1.19791 1.20997 1.21172 1.20889 0.97994 0.97551 0.93312 1.20930 0.93395 0.99564 0.98470 1.20930 0.94787 1.01164 0.96719 1.19804 0.95608 1.01037 0.93721 1.20730 0.91846 1.01698 1.02345 1.20925 0.93700 1.01490 0.97875 1.21018 0.94578 1.00261 0.97246 0.93457 0.91193 0.94249 0.92397 0.93031 0.84976 0.90625 0.94992 0.97664 0.93086 0.86032 0.86571 0.91722 0.91837 0.91917 0.86715 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.74 37.16 0.36 -1.70 16 2 C -0.10 -1.55 5.58 -26.73 -0.15 -1.70 16 3 C 0.12 2.21 2.01 -68.87 -0.14 2.07 16 4 H 0.08 1.50 7.14 -51.92 -0.37 1.13 16 5 N -0.68 -14.21 5.62 -102.17 -0.57 -14.78 16 6 C 0.21 5.38 2.40 -68.86 -0.16 5.21 16 7 H 0.00 0.08 7.67 -51.93 -0.40 -0.32 16 8 C -0.12 -3.01 9.13 37.16 0.34 -2.67 16 9 C -0.52 -14.24 8.59 -34.44 -0.30 -14.54 16 10 H 0.06 1.58 7.58 -52.49 -0.40 1.19 16 11 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 12 N -0.89 -25.76 11.38 55.43 0.63 -25.13 16 13 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 C -0.10 -1.68 4.70 -104.63 -0.49 -2.17 16 18 C -0.11 -1.78 9.09 -39.58 -0.36 -2.14 16 19 C -0.12 -1.80 9.70 -39.58 -0.38 -2.19 16 20 C -0.10 -1.47 5.88 -104.63 -0.62 -2.09 16 21 C -0.11 -1.21 10.01 36.00 0.36 -0.85 16 22 C -0.12 -1.81 9.70 -39.58 -0.38 -2.19 16 23 C -0.11 -1.84 9.67 -39.59 -0.38 -2.22 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.16 7.91 -51.93 -0.41 0.75 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.33 6.89 5.77 -39.29 -0.23 6.66 16 30 H 0.08 2.06 6.23 -51.93 -0.32 1.74 16 31 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.00 0.10 7.58 -51.93 -0.39 -0.29 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.12 1.98 6.54 -52.49 -0.34 1.64 16 35 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 38 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 39 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.12 1.74 8.04 -52.49 -0.42 1.32 16 LS Contribution 323.26 15.07 4.87 4.87 Total: -1.00 -29.02 323.26 -9.13 -38.15 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.64 Total: 5.85 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -2.40 Total: -25.51 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.06 Total: -39.91 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.02 -9.13 -38.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.628 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds