Wall clock time and date at job start Mon Mar 30 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47273 * 2 1 4 4 H 1.09008 * 109.46603 * 54.70349 * 3 2 1 5 5 N 1.46899 * 109.46983 * 294.71225 * 3 2 1 6 6 C 1.46907 * 110.99968 * 153.56719 * 5 3 2 7 7 H 1.08995 * 109.47074 * 32.69136 * 6 5 3 8 8 C 1.53001 * 109.46568 * 272.69771 * 6 5 3 9 9 C 1.50698 * 109.47071 * 152.69768 * 6 5 3 10 10 H 1.08001 * 120.00274 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99996 * 179.97438 * 9 6 5 12 12 N 1.31517 * 119.99613 * 0.02562 * 11 9 6 13 13 Si 1.86797 * 120.00003 * 180.02562 * 11 9 6 14 14 H 1.48496 * 109.47100 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47254 * 119.99924 * 13 11 9 16 16 H 1.48507 * 109.46574 * 239.99868 * 13 11 9 17 17 C 1.50693 * 109.47776 * 174.70476 * 3 2 1 18 18 C 1.38238 * 119.99737 * 79.72832 * 17 3 2 19 19 C 1.38237 * 119.99672 * 179.75115 * 18 17 3 20 20 C 1.38230 * 120.00203 * 0.52463 * 19 18 17 21 21 C 1.50696 * 120.00135 * 179.77298 * 20 19 18 22 22 C 1.38240 * 119.99867 * 359.74936 * 20 19 18 23 23 C 1.38230 * 120.00289 * 260.00410 * 17 3 2 24 24 H 1.08995 * 109.47314 * 305.41694 * 1 2 3 25 25 H 1.09003 * 109.47037 * 65.42468 * 1 2 3 26 26 H 1.08998 * 109.46348 * 185.41885 * 1 2 3 27 27 H 1.09004 * 109.47260 * 240.00447 * 2 1 3 28 28 H 1.09000 * 109.47618 * 120.00420 * 2 1 3 29 29 H 1.00905 * 110.99788 * 277.51614 * 5 3 2 30 30 H 1.09007 * 109.46968 * 174.65579 * 8 6 5 31 31 H 1.09009 * 109.46883 * 294.64834 * 8 6 5 32 32 H 1.08991 * 109.47750 * 54.65159 * 8 6 5 33 33 H 0.97001 * 119.99740 * 179.97438 * 12 11 9 34 34 H 1.07994 * 120.00056 * 359.97438 * 18 17 3 35 35 H 1.08003 * 119.99833 * 180.29803 * 19 18 17 36 36 H 1.08997 * 109.47563 * 269.97986 * 21 20 19 37 37 H 1.09004 * 109.47339 * 29.97948 * 21 20 19 38 38 H 1.08997 * 109.47301 * 149.97366 * 21 20 19 39 39 H 1.08002 * 119.99480 * 180.02562 * 22 20 19 40 40 H 1.08000 * 119.99941 * 0.02562 * 23 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6012 1.9830 0.8388 5 7 1.6574 2.0971 -1.2582 6 6 1.5447 3.5513 -1.0820 7 1 2.2684 3.8843 -0.3381 8 6 0.1315 3.8997 -0.6102 9 6 1.8201 4.2391 -2.3942 10 1 2.0558 3.6546 -3.2713 11 6 1.7713 5.6146 -2.4751 12 7 1.4848 6.3264 -1.4070 13 14 2.1120 6.4672 -4.1019 14 1 2.4076 5.4493 -5.1419 15 1 0.9211 7.2569 -4.5059 16 1 3.2789 7.3733 -3.9509 17 6 3.5412 1.4447 0.1311 18 6 4.3320 1.1960 -0.9752 19 6 5.7092 1.2031 -0.8560 20 6 6.2955 1.4480 0.3716 21 6 7.7967 1.4507 0.5026 22 6 5.5046 1.6911 1.4791 23 6 4.1275 1.6896 1.3587 24 1 -0.3634 0.5955 0.8375 25 1 -0.3633 0.4274 -0.9346 26 1 -0.3632 -1.0231 0.0971 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.3081 1.8716 -1.9956 30 1 0.0750 4.9655 -0.3885 31 1 -0.5844 3.6533 -1.3944 32 1 -0.1028 3.3288 0.2882 33 1 1.4508 7.2941 -1.4638 34 1 3.8739 0.9998 -1.9333 35 1 6.3271 1.0136 -1.7213 36 1 8.1423 0.4453 0.7431 37 1 8.2430 1.7728 -0.4383 38 1 8.0909 2.1359 1.2976 39 1 5.9627 1.8828 2.4381 40 1 3.5097 1.8790 2.2240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170806962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:37 Heat of formation + Delta-G solvation = -10.661464 kcal Electronic energy + Delta-G solvation = -18214.816073 eV Core-core repulsion = 15606.788321 eV Total energy + Delta-G solvation = -2608.027752 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.66810 -38.12347 -35.61899 -33.29301 -33.07403 -31.81930 -30.05147 -27.99312 -27.23018 -25.31323 -23.69981 -22.43906 -22.00200 -20.82789 -18.57384 -17.40754 -16.92848 -16.31666 -15.97881 -15.45929 -15.36220 -15.05956 -14.56383 -14.35094 -14.29513 -14.04519 -13.67264 -13.23709 -13.11417 -12.88639 -12.77669 -12.69271 -12.54592 -12.44045 -12.20596 -12.16748 -11.87139 -11.68849 -11.55611 -11.50583 -10.84466 -10.58354 -9.79514 -9.34732 -8.99692 -8.13111 -6.26050 0.47429 0.53374 1.38771 1.40431 1.51994 2.40536 2.87501 3.16105 3.65572 3.81030 3.96836 4.10301 4.16104 4.32171 4.39437 4.50818 4.62250 4.67852 4.81909 4.85412 4.86849 4.89167 4.98382 5.07623 5.11060 5.17695 5.20955 5.26724 5.32328 5.35778 5.49824 5.55537 5.62170 5.65214 5.71639 5.79248 5.90603 6.17784 6.21968 6.50081 6.80410 7.03521 7.43946 8.93169 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.007746 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.979529 B = 3613.741580 C = 4732.611959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 C 0.125 3.875 4 H 0.059 0.941 5 N -0.671 5.671 6 C 0.223 3.777 7 H -0.034 1.034 8 C -0.107 4.107 9 C -0.533 4.533 10 H 0.057 0.943 11 C 0.014 3.986 12 N -0.918 5.918 13 Si 0.958 3.042 14 H -0.266 1.266 15 H -0.279 1.279 16 H -0.282 1.282 17 C -0.118 4.118 18 C -0.123 4.123 19 C -0.127 4.127 20 C -0.103 4.103 21 C -0.107 4.107 22 C -0.127 4.127 23 C -0.128 4.128 24 H 0.042 0.958 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.331 0.669 30 H 0.050 0.950 31 H 0.026 0.974 32 H 0.022 0.978 33 H 0.261 0.739 34 H 0.119 0.881 35 H 0.137 0.863 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.140 0.860 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.822 -11.770 4.412 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.132 4.132 3 C 0.015 3.985 4 H 0.077 0.923 5 N -0.301 5.301 6 C 0.114 3.886 7 H -0.017 1.017 8 C -0.166 4.166 9 C -0.572 4.572 10 H 0.075 0.925 11 C -0.186 4.186 12 N -0.558 5.558 13 Si 0.784 3.216 14 H -0.190 1.190 15 H -0.205 1.205 16 H -0.208 1.208 17 C -0.120 4.120 18 C -0.141 4.141 19 C -0.145 4.145 20 C -0.104 4.104 21 C -0.164 4.164 22 C -0.145 4.145 23 C -0.147 4.147 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.151 0.849 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.137 0.863 35 H 0.155 0.845 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.158 0.842 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.099 -11.697 4.540 14.416 hybrid contribution 0.776 1.238 -0.632 1.593 sum 7.876 -10.458 3.907 13.662 Atomic orbital electron populations 1.21584 0.95046 1.01037 1.01597 1.21406 0.96573 0.93515 1.01683 1.20690 0.88313 0.96314 0.93227 0.92277 1.60895 1.53112 1.10363 1.05779 1.18807 0.92270 0.83413 0.94106 1.01685 1.21506 0.97792 1.00239 0.97063 1.21617 1.47395 0.92059 0.96119 0.92503 1.25703 0.94922 0.98192 0.99739 1.70052 1.49638 1.06135 1.29943 0.85506 0.77653 0.78442 0.80038 1.18978 1.20505 1.20837 1.20864 0.97485 0.99356 0.94306 1.21047 0.94404 1.00468 0.98200 1.21247 0.94359 1.00834 0.98064 1.20267 0.97660 0.99324 0.93103 1.20791 0.89139 1.03200 1.03256 1.21271 0.93153 1.00746 0.99322 1.21228 0.95733 1.00610 0.97136 0.93922 0.93223 0.91644 0.91999 0.91262 0.84926 0.93103 0.95472 0.95924 0.92995 0.86282 0.84524 0.89818 0.91073 0.90865 0.84209 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.74 71.98 0.70 -3.18 16 2 C -0.09 -2.78 5.58 30.59 0.17 -2.60 16 3 C 0.13 4.57 2.01 44.17 0.09 4.66 16 4 H 0.06 2.35 7.14 -2.38 -0.02 2.33 16 5 N -0.67 -28.70 5.62 -477.15 -2.68 -31.38 16 6 C 0.22 11.58 2.40 44.17 0.11 11.69 16 7 H -0.03 -2.03 7.67 -2.39 -0.02 -2.04 16 8 C -0.11 -5.50 9.13 71.98 0.66 -4.85 16 9 C -0.53 -29.87 8.59 25.60 0.22 -29.65 16 10 H 0.06 3.12 7.58 -2.91 -0.02 3.10 16 11 C 0.01 0.76 5.30 84.65 0.45 1.21 16 12 N -0.92 -54.11 11.38 21.45 0.24 -53.86 16 13 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 17 C -0.12 -4.18 4.70 -19.87 -0.09 -4.27 16 18 C -0.12 -4.13 9.09 22.27 0.20 -3.93 16 19 C -0.13 -3.73 9.70 22.27 0.22 -3.51 16 20 C -0.10 -2.79 5.88 -19.87 -0.12 -2.91 16 21 C -0.11 -2.04 10.01 71.23 0.71 -1.33 16 22 C -0.13 -3.58 9.70 22.27 0.22 -3.37 16 23 C -0.13 -4.16 9.67 22.27 0.22 -3.95 16 24 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.05 1.62 7.91 -2.39 -0.02 1.60 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.33 14.05 5.77 -89.69 -0.52 13.53 16 30 H 0.05 2.84 6.23 -2.38 -0.01 2.83 16 31 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.02 1.02 7.58 -2.39 -0.02 1.01 16 33 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.12 3.92 6.54 -2.91 -0.02 3.90 16 35 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.26 8.09 -2.38 -0.02 1.24 16 38 H 0.07 1.25 8.09 -2.39 -0.02 1.23 16 39 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 40 H 0.12 3.67 8.04 -2.91 -0.02 3.65 16 Total: -1.00 -62.43 323.26 3.82 -58.61 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.48 Total: 26.26 kcal Atomic # 6 Polarization: -49.73 SS G_CDS: 3.75 Total: -45.98 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -2.44 Total: -85.24 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -62.43 3.82 -58.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.948 kcal (2) G-P(sol) polarization free energy of solvation -62.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds