Wall clock time and date at job start Mon Mar 30 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46740 * 2 1 4 4 H 1.08999 * 109.46772 * 54.38488 * 3 2 1 5 5 N 1.46904 * 109.46367 * 174.37852 * 3 2 1 6 6 C 1.46896 * 110.99814 * 274.47088 * 5 3 2 7 7 H 1.08995 * 109.47260 * 33.24748 * 6 5 3 8 8 C 1.53004 * 109.47262 * 273.24031 * 6 5 3 9 9 C 1.50703 * 109.47012 * 153.24449 * 6 5 3 10 10 H 1.08008 * 119.99765 * 359.97438 * 9 6 5 11 11 C 1.37878 * 120.00303 * 179.97438 * 9 6 5 12 12 N 1.31512 * 119.99904 * 0.02562 * 11 9 6 13 13 Si 1.86795 * 120.00053 * 179.97438 * 11 9 6 14 14 H 1.48503 * 109.47150 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47138 * 120.00233 * 13 11 9 16 16 H 1.48500 * 109.47565 * 239.99872 * 13 11 9 17 17 C 1.50698 * 109.47131 * 294.37871 * 3 2 1 18 18 C 1.38237 * 119.99985 * 279.72368 * 17 3 2 19 19 C 1.38235 * 119.99879 * 179.74665 * 18 17 3 20 20 C 1.38230 * 119.99796 * 0.55654 * 19 18 17 21 21 C 1.50700 * 119.99912 * 179.72430 * 20 19 18 22 22 C 1.38237 * 120.00245 * 359.69904 * 20 19 18 23 23 C 1.38230 * 119.99783 * 100.00716 * 17 3 2 24 24 H 1.08993 * 109.47154 * 305.67831 * 1 2 3 25 25 H 1.09007 * 109.46921 * 65.67712 * 1 2 3 26 26 H 1.09003 * 109.47329 * 185.67072 * 1 2 3 27 27 H 1.08998 * 109.46672 * 240.00451 * 2 1 3 28 28 H 1.08997 * 109.47056 * 120.00121 * 2 1 3 29 29 H 1.00902 * 110.99659 * 150.52346 * 5 3 2 30 30 H 1.09008 * 109.46885 * 180.02562 * 8 6 5 31 31 H 1.09001 * 109.47259 * 300.00218 * 8 6 5 32 32 H 1.09003 * 109.46920 * 60.00521 * 8 6 5 33 33 H 0.97003 * 120.00235 * 179.97438 * 12 11 9 34 34 H 1.08002 * 120.00076 * 0.02562 * 18 17 3 35 35 H 1.07998 * 120.00204 * 180.27572 * 19 18 17 36 36 H 1.09002 * 109.47371 * 269.97414 * 21 20 19 37 37 H 1.08998 * 109.47549 * 29.97741 * 21 20 19 38 38 H 1.09002 * 109.47110 * 149.97899 * 21 20 19 39 39 H 1.08002 * 120.00186 * 180.02562 * 22 20 19 40 40 H 1.07999 * 120.00104 * 359.97438 * 23 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9845 0.8354 5 7 3.5027 1.4447 0.1357 6 6 3.9004 1.3832 1.5484 7 1 3.1747 0.7901 2.1047 8 6 3.9519 2.7992 2.1259 9 6 5.2613 0.7456 1.6599 10 1 5.7788 0.4183 0.7702 11 6 5.8458 0.5799 2.8976 12 7 5.2155 0.9780 3.9810 13 14 7.5324 -0.2111 3.0358 14 1 8.0241 -0.5683 1.6808 15 1 8.4769 0.7442 3.6687 16 1 7.4374 -1.4375 3.8676 17 6 1.6544 2.1116 -1.2941 18 6 2.4012 1.8898 -2.4361 19 6 2.0444 2.4994 -3.6244 20 6 0.9478 3.3398 -3.6680 21 6 0.5626 4.0093 -4.9620 22 6 0.2042 3.5658 -2.5248 23 6 0.5576 2.9517 -1.3378 24 1 -0.3633 0.5993 0.8347 25 1 -0.3633 0.4233 -0.9365 26 1 -0.3634 -1.0226 0.1015 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9068 2.2497 -0.3190 30 1 4.2475 2.7535 3.1741 31 1 4.6777 3.3923 1.5696 32 1 2.9675 3.2604 2.0453 33 1 5.6265 0.8612 4.8519 34 1 3.2606 1.2367 -2.4010 35 1 2.6252 2.3227 -4.5176 36 1 1.0722 4.9697 -5.0401 37 1 0.8525 3.3750 -5.7997 38 1 -0.5157 4.1675 -4.9823 39 1 -0.6529 4.2221 -2.5590 40 1 -0.0233 3.1282 -0.4446 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170806963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:40 Heat of formation + Delta-G solvation = 4.508321 kcal Electronic energy + Delta-G solvation = -17987.447428 eV Core-core repulsion = 15380.077487 eV Total energy + Delta-G solvation = -2607.369941 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.48433 -36.68323 -33.95892 -31.90199 -31.59278 -30.68075 -28.52262 -26.50544 -25.09844 -23.94036 -22.54531 -21.58362 -20.28564 -19.28338 -16.72644 -15.64167 -15.35093 -14.90083 -14.59043 -14.17936 -14.04589 -13.71401 -13.40413 -13.17336 -12.99516 -12.34574 -12.24721 -12.06012 -11.75519 -11.66056 -11.19668 -11.12257 -10.92895 -10.89102 -10.72554 -10.61837 -10.33753 -10.25531 -10.02093 -9.71884 -8.95768 -8.68270 -8.33334 -8.23658 -7.21637 -5.95665 -3.98411 1.55655 1.63998 3.33314 3.41087 3.46436 3.97688 4.46488 4.93721 4.94769 5.11483 5.19025 5.26154 5.36153 5.42721 5.54330 5.63298 5.66613 5.72674 5.78647 5.90236 6.03014 6.05012 6.23979 6.32918 6.36978 6.39505 6.60146 6.68988 6.72579 6.76942 6.84761 6.87604 6.96915 7.14986 7.25918 7.42506 7.77213 7.93146 8.31684 8.58018 8.65154 9.09225 9.66837 11.11442 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.030992 B = 0.005148 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.239368 B = 5438.074896 C = 5716.984714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C 0.125 3.875 4 H 0.042 0.958 5 N -0.677 5.677 6 C 0.211 3.789 7 H 0.035 0.965 8 C -0.168 4.168 9 C -0.491 4.491 10 H 0.063 0.937 11 C 0.054 3.946 12 N -0.898 5.898 13 Si 0.896 3.104 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.286 1.286 17 C -0.075 4.075 18 C -0.096 4.096 19 C -0.124 4.124 20 C -0.100 4.100 21 C -0.110 4.110 22 C -0.126 4.126 23 C -0.113 4.113 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.327 0.673 30 H 0.088 0.912 31 H 0.027 0.973 32 H 0.004 0.996 33 H 0.258 0.742 34 H 0.133 0.867 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.115 0.885 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.977 3.849 -12.606 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.143 4.143 3 C 0.015 3.985 4 H 0.060 0.940 5 N -0.307 5.307 6 C 0.103 3.897 7 H 0.053 0.947 8 C -0.228 4.228 9 C -0.530 4.530 10 H 0.081 0.919 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.724 3.276 14 H -0.198 1.198 15 H -0.213 1.213 16 H -0.212 1.212 17 C -0.076 4.076 18 C -0.115 4.115 19 C -0.142 4.142 20 C -0.100 4.100 21 C -0.167 4.167 22 C -0.144 4.144 23 C -0.132 4.132 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.144 0.856 30 H 0.107 0.893 31 H 0.046 0.954 32 H 0.023 0.977 33 H 0.068 0.932 34 H 0.151 0.849 35 H 0.135 0.865 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.133 0.867 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.878 3.160 -12.500 16.243 hybrid contribution 0.682 0.593 0.600 1.085 sum -9.196 3.754 -11.900 15.501 Atomic orbital electron populations 1.21798 0.96837 1.00932 1.01202 1.21472 0.93886 0.96070 1.02859 1.20471 0.91282 0.94872 0.91877 0.93993 1.60923 1.04581 1.46520 1.18692 1.19218 0.96386 0.92220 0.81863 0.94734 1.22431 0.96116 0.98848 1.05376 1.21197 1.01608 1.37631 0.92564 0.91916 1.24948 0.97822 0.95980 0.95843 1.69895 1.38063 1.47998 0.97853 0.86474 0.84191 0.78904 0.78012 1.19759 1.21282 1.21195 1.20172 0.94958 0.96428 0.96005 1.21146 0.99592 0.99096 0.91633 1.21022 0.97067 0.98061 0.98085 1.19835 0.96294 0.98507 0.95412 1.20742 1.01347 1.00151 0.94477 1.20906 1.00085 1.00751 0.92629 1.21039 0.97209 0.97231 0.97701 0.93200 0.93124 0.93199 0.91891 0.91089 0.85583 0.89291 0.95401 0.97737 0.93197 0.84933 0.86526 0.91571 0.91864 0.91977 0.86703 0.86540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.50 37.16 0.35 -1.78 16 2 C -0.10 -1.80 5.61 -26.73 -0.15 -1.95 16 3 C 0.13 2.26 2.09 -68.86 -0.14 2.12 16 4 H 0.04 0.81 7.11 -51.93 -0.37 0.44 16 5 N -0.68 -14.27 5.43 -102.17 -0.56 -14.82 16 6 C 0.21 5.27 2.36 -68.86 -0.16 5.11 16 7 H 0.03 0.95 7.14 -51.93 -0.37 0.58 16 8 C -0.17 -4.10 8.92 37.16 0.33 -3.77 16 9 C -0.49 -13.56 8.84 -34.44 -0.30 -13.87 16 10 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 11 C 0.05 1.51 5.30 -17.82 -0.09 1.41 16 12 N -0.90 -25.77 11.32 55.43 0.63 -25.14 16 13 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 C -0.08 -1.19 4.03 -104.63 -0.42 -1.61 16 18 C -0.10 -1.46 8.99 -39.58 -0.36 -1.82 16 19 C -0.12 -1.64 9.70 -39.59 -0.38 -2.02 16 20 C -0.10 -1.24 5.88 -104.62 -0.62 -1.85 16 21 C -0.11 -1.02 10.01 36.01 0.36 -0.66 16 22 C -0.13 -1.60 9.70 -39.58 -0.38 -1.98 16 23 C -0.11 -1.61 8.94 -39.58 -0.35 -1.97 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.69 7.13 -51.92 -0.37 0.32 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.07 1.37 7.44 -51.93 -0.39 0.99 16 29 H 0.33 6.75 7.67 -39.29 -0.30 6.45 16 30 H 0.09 2.40 6.07 -51.92 -0.32 2.08 16 31 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 32 H 0.00 0.08 7.57 -51.93 -0.39 -0.31 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.13 2.08 7.71 -52.49 -0.40 1.68 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 38 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 39 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 1.54 8.04 -52.49 -0.42 1.12 16 LS Contribution 322.47 15.07 4.86 4.86 Total: -1.00 -28.33 322.47 -9.09 -37.42 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.68 Total: 5.75 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -2.32 Total: -24.64 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.07 Total: -39.96 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.33 -9.09 -37.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.931 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds