Wall clock time and date at job start Mon Mar 30 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46740 * 2 1 4 4 H 1.08999 * 109.46772 * 54.38488 * 3 2 1 5 5 N 1.46904 * 109.46367 * 174.37852 * 3 2 1 6 6 C 1.46896 * 110.99814 * 274.47088 * 5 3 2 7 7 H 1.08995 * 109.47260 * 33.24748 * 6 5 3 8 8 C 1.53004 * 109.47262 * 273.24031 * 6 5 3 9 9 C 1.50703 * 109.47012 * 153.24449 * 6 5 3 10 10 H 1.08008 * 119.99765 * 359.97438 * 9 6 5 11 11 C 1.37878 * 120.00303 * 179.97438 * 9 6 5 12 12 N 1.31512 * 119.99904 * 0.02562 * 11 9 6 13 13 Si 1.86795 * 120.00053 * 179.97438 * 11 9 6 14 14 H 1.48503 * 109.47150 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47138 * 120.00233 * 13 11 9 16 16 H 1.48500 * 109.47565 * 239.99872 * 13 11 9 17 17 C 1.50698 * 109.47131 * 294.37871 * 3 2 1 18 18 C 1.38237 * 119.99985 * 279.72368 * 17 3 2 19 19 C 1.38235 * 119.99879 * 179.74665 * 18 17 3 20 20 C 1.38230 * 119.99796 * 0.55654 * 19 18 17 21 21 C 1.50700 * 119.99912 * 179.72430 * 20 19 18 22 22 C 1.38237 * 120.00245 * 359.69904 * 20 19 18 23 23 C 1.38230 * 119.99783 * 100.00716 * 17 3 2 24 24 H 1.08993 * 109.47154 * 305.67831 * 1 2 3 25 25 H 1.09007 * 109.46921 * 65.67712 * 1 2 3 26 26 H 1.09003 * 109.47329 * 185.67072 * 1 2 3 27 27 H 1.08998 * 109.46672 * 240.00451 * 2 1 3 28 28 H 1.08997 * 109.47056 * 120.00121 * 2 1 3 29 29 H 1.00902 * 110.99659 * 150.52346 * 5 3 2 30 30 H 1.09008 * 109.46885 * 180.02562 * 8 6 5 31 31 H 1.09001 * 109.47259 * 300.00218 * 8 6 5 32 32 H 1.09003 * 109.46920 * 60.00521 * 8 6 5 33 33 H 0.97003 * 120.00235 * 179.97438 * 12 11 9 34 34 H 1.08002 * 120.00076 * 0.02562 * 18 17 3 35 35 H 1.07998 * 120.00204 * 180.27572 * 19 18 17 36 36 H 1.09002 * 109.47371 * 269.97414 * 21 20 19 37 37 H 1.08998 * 109.47549 * 29.97741 * 21 20 19 38 38 H 1.09002 * 109.47110 * 149.97899 * 21 20 19 39 39 H 1.08002 * 120.00186 * 180.02562 * 22 20 19 40 40 H 1.07999 * 120.00104 * 359.97438 * 23 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9845 0.8354 5 7 3.5027 1.4447 0.1357 6 6 3.9004 1.3832 1.5484 7 1 3.1747 0.7901 2.1047 8 6 3.9519 2.7992 2.1259 9 6 5.2613 0.7456 1.6599 10 1 5.7788 0.4183 0.7702 11 6 5.8458 0.5799 2.8976 12 7 5.2155 0.9780 3.9810 13 14 7.5324 -0.2111 3.0358 14 1 8.0241 -0.5683 1.6808 15 1 8.4769 0.7442 3.6687 16 1 7.4374 -1.4375 3.8676 17 6 1.6544 2.1116 -1.2941 18 6 2.4012 1.8898 -2.4361 19 6 2.0444 2.4994 -3.6244 20 6 0.9478 3.3398 -3.6680 21 6 0.5626 4.0093 -4.9620 22 6 0.2042 3.5658 -2.5248 23 6 0.5576 2.9517 -1.3378 24 1 -0.3633 0.5993 0.8347 25 1 -0.3633 0.4233 -0.9365 26 1 -0.3634 -1.0226 0.1015 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9068 2.2497 -0.3190 30 1 4.2475 2.7535 3.1741 31 1 4.6777 3.3923 1.5696 32 1 2.9675 3.2604 2.0453 33 1 5.6265 0.8612 4.8519 34 1 3.2606 1.2367 -2.4010 35 1 2.6252 2.3227 -4.5176 36 1 1.0722 4.9697 -5.0401 37 1 0.8525 3.3750 -5.7997 38 1 -0.5157 4.1675 -4.9823 39 1 -0.6529 4.2221 -2.5590 40 1 -0.0233 3.1282 -0.4446 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170806963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:39 Heat of formation + Delta-G solvation = -10.201383 kcal Electronic energy + Delta-G solvation = -17988.085288 eV Core-core repulsion = 15380.077487 eV Total energy + Delta-G solvation = -2608.007801 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.64046 -38.19938 -35.68650 -33.55203 -32.86988 -31.76220 -30.12600 -27.73779 -27.20611 -25.27888 -23.63383 -22.95509 -21.88487 -20.71700 -18.56446 -17.21490 -16.78102 -16.36683 -16.01846 -15.48287 -15.36827 -15.02966 -14.67275 -14.43037 -14.19843 -14.08285 -13.62006 -13.38229 -12.99069 -12.88591 -12.81644 -12.73091 -12.60937 -12.34687 -12.27322 -12.13996 -11.95119 -11.85620 -11.71017 -11.28758 -11.00564 -10.47983 -9.74368 -9.32132 -8.97550 -8.08883 -6.19549 0.48427 0.57771 1.41677 1.43409 1.55820 2.44473 2.90608 3.19483 3.55042 3.82366 4.04035 4.15076 4.23386 4.30816 4.34979 4.52386 4.61669 4.68110 4.70804 4.74082 4.85752 4.89654 4.94785 5.00003 5.03124 5.09115 5.15929 5.24602 5.30110 5.35087 5.39933 5.47309 5.58450 5.69155 5.76097 5.78703 5.89688 6.20487 6.29413 6.66710 6.83654 6.95366 7.50299 8.96982 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.030992 B = 0.005148 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.239368 B = 5438.074896 C = 5716.984714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C 0.130 3.870 4 H 0.027 0.973 5 N -0.677 5.677 6 C 0.218 3.782 7 H 0.004 0.996 8 C -0.155 4.155 9 C -0.510 4.510 10 H 0.054 0.946 11 C 0.008 3.992 12 N -0.923 5.923 13 Si 0.960 3.040 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.282 1.282 17 C -0.092 4.092 18 C -0.110 4.110 19 C -0.128 4.128 20 C -0.097 4.097 21 C -0.109 4.109 22 C -0.126 4.126 23 C -0.120 4.120 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.039 0.961 29 H 0.329 0.671 30 H 0.062 0.938 31 H 0.029 0.971 32 H 0.020 0.980 33 H 0.260 0.740 34 H 0.118 0.882 35 H 0.136 0.864 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.142 0.858 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.725 4.603 -14.529 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.140 4.140 3 C 0.020 3.980 4 H 0.045 0.955 5 N -0.306 5.306 6 C 0.109 3.891 7 H 0.022 0.978 8 C -0.214 4.214 9 C -0.549 4.549 10 H 0.072 0.928 11 C -0.190 4.190 12 N -0.564 5.564 13 Si 0.786 3.214 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.208 1.208 17 C -0.093 4.093 18 C -0.128 4.128 19 C -0.146 4.146 20 C -0.097 4.097 21 C -0.166 4.166 22 C -0.143 4.143 23 C -0.138 4.138 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.146 0.854 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.160 0.840 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.637 3.916 -14.438 18.356 hybrid contribution 0.859 0.388 1.134 1.475 sum -9.778 4.305 -13.305 17.063 Atomic orbital electron populations 1.21701 0.94187 1.02012 1.01788 1.21418 0.96196 0.95260 1.01101 1.20422 0.89020 0.95517 0.93053 0.95484 1.60801 1.06961 1.46707 1.16178 1.18949 0.94622 0.91802 0.83707 0.97827 1.22241 0.96995 0.98698 1.03511 1.21467 1.02770 1.38195 0.92482 0.92775 1.25711 1.01367 0.96406 0.95494 1.70017 1.39504 1.48643 0.98232 0.85473 0.79857 0.78031 0.78031 1.19331 1.20645 1.20779 1.19924 0.96526 0.97984 0.94831 1.21103 0.99466 0.99788 0.92471 1.21262 0.97622 0.97776 0.97902 1.20259 0.95259 0.97435 0.96749 1.20808 1.02474 1.00416 0.92880 1.21234 1.00737 1.00424 0.91955 1.21156 0.96770 0.97036 0.98852 0.93049 0.92078 0.91791 0.92127 0.94213 0.85355 0.91877 0.95143 0.96067 0.93070 0.86373 0.84581 0.90566 0.90751 0.90476 0.84044 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.50 71.98 0.68 -3.20 16 2 C -0.10 -3.59 5.61 30.60 0.17 -3.42 16 3 C 0.13 4.81 2.09 44.17 0.09 4.90 16 4 H 0.03 1.08 7.11 -2.39 -0.02 1.06 16 5 N -0.68 -29.44 5.43 -477.15 -2.59 -32.03 16 6 C 0.22 11.29 2.36 44.17 0.10 11.39 16 7 H 0.00 0.22 7.14 -2.39 -0.02 0.20 16 8 C -0.15 -7.73 8.92 71.98 0.64 -7.09 16 9 C -0.51 -28.89 8.84 25.60 0.23 -28.66 16 10 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 11 C 0.01 0.45 5.30 84.66 0.45 0.90 16 12 N -0.92 -54.04 11.32 21.45 0.24 -53.80 16 13 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 16 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 17 C -0.09 -2.88 4.03 -19.87 -0.08 -2.96 16 18 C -0.11 -3.27 8.99 22.27 0.20 -3.07 16 19 C -0.13 -3.11 9.70 22.27 0.22 -2.90 16 20 C -0.10 -2.09 5.88 -19.87 -0.12 -2.21 16 21 C -0.11 -1.58 10.01 71.24 0.71 -0.86 16 22 C -0.13 -2.83 9.70 22.27 0.22 -2.61 16 23 C -0.12 -3.23 8.94 22.27 0.20 -3.03 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.06 1.58 7.13 -2.38 -0.02 1.57 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.04 1.62 7.44 -2.39 -0.02 1.60 16 29 H 0.33 13.91 7.67 -89.69 -0.69 13.22 16 30 H 0.06 3.48 6.07 -2.38 -0.01 3.47 16 31 H 0.03 1.45 8.13 -2.39 -0.02 1.43 16 32 H 0.02 0.93 7.57 -2.39 -0.02 0.92 16 33 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 34 H 0.12 3.78 7.71 -2.91 -0.02 3.76 16 35 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 38 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 39 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.12 3.08 8.04 -2.91 -0.02 3.05 16 Total: -1.00 -61.43 322.47 3.70 -57.72 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.31 Total: 24.21 kcal Atomic # 6 Polarization: -46.54 SS G_CDS: 3.72 Total: -42.83 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -2.35 Total: -85.83 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -61.43 3.70 -57.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170806963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.522 kcal (2) G-P(sol) polarization free energy of solvation -61.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds