Wall clock time and date at job start Mon Mar 30 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47108 * 2 1 4 4 C 1.50697 * 109.47031 * 120.00001 * 2 1 3 5 5 C 1.38056 * 120.04774 * 300.00051 * 4 2 1 6 6 C 1.38329 * 120.09217 * 179.97438 * 5 4 2 7 7 C 1.38329 * 120.17838 * 0.04115 * 6 5 4 8 8 C 1.38052 * 120.09430 * 359.95854 * 7 6 5 9 9 C 1.50693 * 120.04973 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47405 * 300.04581 * 9 8 7 11 11 C 1.53000 * 109.47025 * 60.04368 * 9 8 7 12 12 C 1.39079 * 120.04737 * 119.72938 * 4 2 1 13 13 N 1.39308 * 120.08713 * 359.97438 * 12 4 2 14 14 C 1.36847 * 119.99524 * 91.88137 * 13 12 4 15 15 H 1.08001 * 120.00842 * 354.31154 * 14 13 12 16 16 C 1.38798 * 119.99640 * 174.31070 * 14 13 12 17 17 N 1.31594 * 119.99886 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99965 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47361 * 89.99546 * 18 16 14 20 20 H 1.48501 * 109.47180 * 209.99851 * 18 16 14 21 21 H 1.48503 * 109.47302 * 329.99632 * 18 16 14 22 22 H 1.08999 * 109.47505 * 299.99988 * 1 2 3 23 23 H 1.09002 * 109.47468 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47552 * 60.00145 * 1 2 3 25 25 H 1.08999 * 109.47505 * 240.00012 * 2 1 3 26 26 H 1.09004 * 109.46747 * 60.00098 * 3 2 1 27 27 H 1.08998 * 109.47244 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47323 * 300.00071 * 3 2 1 29 29 H 1.08006 * 119.94898 * 359.97438 * 5 4 2 30 30 H 1.08000 * 119.90772 * 180.02562 * 6 5 4 31 31 H 1.08002 * 119.95465 * 179.97438 * 7 6 5 32 32 H 1.09003 * 109.47342 * 180.02562 * 9 8 7 33 33 H 1.08995 * 109.46914 * 59.99287 * 10 9 8 34 34 H 1.08997 * 109.47116 * 179.97438 * 10 9 8 35 35 H 1.08999 * 109.46713 * 300.00120 * 10 9 8 36 36 H 1.09001 * 109.47253 * 60.00049 * 11 9 8 37 37 H 1.09000 * 109.47608 * 180.02562 * 11 9 8 38 38 H 1.09003 * 109.46984 * 300.00125 * 11 9 8 39 39 H 0.96997 * 120.00212 * 271.88201 * 13 12 4 40 40 H 0.96997 * 119.99593 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6993 -0.2396 2.4848 6 6 2.1595 -0.8913 3.6149 7 6 2.9553 -2.0162 3.4933 8 6 3.2928 -2.4935 2.2427 9 6 4.1593 -3.7193 2.1114 10 6 5.5086 -3.4649 2.7866 11 6 3.4682 -4.9069 2.7845 12 6 2.8273 -1.8445 1.1040 13 7 3.1604 -2.3265 -0.1599 14 6 4.3141 -1.9119 -0.7679 15 1 4.9195 -1.1432 -0.3107 16 6 4.7063 -2.4793 -1.9724 17 7 5.8155 -2.0803 -2.5574 18 14 3.6589 -3.8083 -2.7636 19 1 2.6631 -3.1804 -3.6688 20 1 4.5286 -4.7248 -3.5440 21 1 2.9524 -4.5763 -1.7071 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.0787 0.6388 2.5838 30 1 1.8968 -0.5206 4.5947 31 1 3.3129 -2.5219 4.3781 32 1 4.3171 -3.9415 1.0560 33 1 5.3505 -3.2429 3.8420 34 1 6.1351 -4.3518 2.6921 35 1 6.0009 -2.6189 2.3072 36 1 2.5070 -5.0882 2.3035 37 1 4.0951 -5.7935 2.6900 38 1 3.3102 -4.6849 3.8399 39 1 2.5747 -2.9559 -0.6089 40 1 6.0893 -2.4765 -3.3993 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000202246480.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:40 Heat of formation + Delta-G solvation = 13.760344 kcal Electronic energy + Delta-G solvation = -18754.017647 eV Core-core repulsion = 16147.048904 eV Total energy + Delta-G solvation = -2606.968743 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.44821 -35.86089 -34.69913 -33.52953 -31.47009 -28.55222 -28.21551 -26.69281 -26.65615 -23.70636 -23.28947 -21.05876 -20.33137 -18.22201 -17.90086 -16.33824 -15.45540 -14.85382 -14.34621 -13.70336 -13.68990 -13.57935 -13.15198 -13.04872 -12.71673 -12.69003 -12.10002 -11.92313 -11.83197 -11.67410 -11.50820 -11.21165 -11.03501 -10.77633 -10.72235 -10.50842 -10.40702 -10.23802 -9.91383 -9.88147 -9.62565 -9.03384 -7.94543 -7.75965 -7.46755 -5.84811 -3.25585 2.02546 2.08362 3.31874 3.35322 3.40808 4.38619 4.50947 5.21030 5.27885 5.29227 5.40269 5.48551 5.55005 5.63830 5.71257 5.76029 5.86305 5.87436 6.00374 6.03010 6.07024 6.18689 6.20802 6.23020 6.26181 6.36814 6.42655 6.53041 6.61297 6.71814 6.77513 6.79431 6.81789 7.04055 7.11117 7.27277 7.56393 7.57568 8.03274 8.39733 9.16506 9.88470 9.99184 11.32449 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014968 B = 0.011453 C = 0.007724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.260064 B = 2444.191093 C = 3624.128016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.057 4.057 3 C -0.135 4.135 4 C -0.089 4.089 5 C -0.121 4.121 6 C -0.142 4.142 7 C -0.121 4.121 8 C -0.087 4.087 9 C -0.058 4.058 10 C -0.134 4.134 11 C -0.139 4.139 12 C 0.210 3.790 13 N -0.706 5.706 14 C -0.242 4.242 15 H 0.092 0.908 16 C 0.015 3.985 17 N -0.926 5.926 18 Si 0.874 3.126 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.274 1.274 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.098 0.902 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.370 0.630 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.189 0.449 9.961 12.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 C -0.192 4.192 4 C -0.092 4.092 5 C -0.140 4.140 6 C -0.160 4.160 7 C -0.140 4.140 8 C -0.090 4.090 9 C -0.076 4.076 10 C -0.192 4.192 11 C -0.196 4.196 12 C 0.114 3.886 13 N -0.347 5.347 14 C -0.371 4.371 15 H 0.110 0.890 16 C -0.181 4.181 17 N -0.572 5.572 18 Si 0.704 3.296 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.200 1.200 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.116 0.884 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.205 0.795 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.934 0.536 9.849 12.658 hybrid contribution -0.614 -0.887 -0.619 1.244 sum -8.548 -0.351 9.230 12.585 Atomic orbital electron populations 1.21836 0.95767 1.01199 1.00821 1.20030 0.94155 0.95770 0.97613 1.21751 1.01770 0.95360 1.00327 1.20477 0.98774 0.95770 0.94170 1.20731 1.01251 0.99920 0.92085 1.20865 1.00456 0.97089 0.97633 1.20746 0.99656 0.97102 0.96507 1.20511 0.98299 0.97243 0.92919 1.20036 0.93341 0.91659 1.02563 1.21744 0.96538 1.01580 0.99298 1.21833 1.00214 0.97644 0.99899 1.17305 0.92876 0.91670 0.86713 1.40096 1.25941 1.53708 1.14916 1.18898 0.97895 1.17497 1.02769 0.89047 1.24637 0.96780 0.99002 0.97707 1.69673 1.23266 1.45351 1.18956 0.86703 0.80305 0.82884 0.79706 1.20878 1.21567 1.19995 0.93272 0.93133 0.93077 0.88368 0.93633 0.92265 0.93205 0.87316 0.87382 0.87323 0.88250 0.93698 0.93231 0.92209 0.93174 0.93097 0.93305 0.79477 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.01 37.16 0.33 -1.69 16 2 C -0.06 -1.00 3.05 -91.77 -0.28 -1.28 16 3 C -0.13 -2.19 9.01 37.16 0.33 -1.85 16 4 C -0.09 -1.65 4.80 -104.38 -0.50 -2.16 16 5 C -0.12 -1.97 8.71 -39.61 -0.35 -2.31 16 6 C -0.14 -2.19 10.04 -39.51 -0.40 -2.59 16 7 C -0.12 -1.99 8.71 -39.62 -0.35 -2.33 16 8 C -0.09 -1.63 4.80 -104.38 -0.50 -2.14 16 9 C -0.06 -1.04 3.05 -91.77 -0.28 -1.32 16 10 C -0.13 -2.24 9.01 37.16 0.33 -1.91 16 11 C -0.14 -2.09 9.01 37.16 0.33 -1.75 16 12 C 0.21 4.34 5.83 -83.84 -0.49 3.85 16 13 N -0.71 -16.22 2.59 -9.60 -0.02 -16.24 16 14 C -0.24 -6.50 9.88 -15.11 -0.15 -6.65 16 15 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 16 C 0.02 0.43 5.50 -17.45 -0.10 0.33 16 17 N -0.93 -28.04 13.97 55.49 0.78 -27.27 16 18 Si 0.87 21.18 27.68 -169.99 -4.71 16.47 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.27 -6.27 6.60 56.52 0.37 -5.89 16 22 H 0.05 0.64 7.39 -51.93 -0.38 0.26 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.10 2.02 6.78 -51.93 -0.35 1.67 16 26 H 0.04 0.65 7.39 -51.93 -0.38 0.27 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.11 1.54 7.10 -52.48 -0.37 1.16 16 30 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.11 1.56 7.10 -52.49 -0.37 1.18 16 32 H 0.10 2.13 6.62 -51.93 -0.34 1.78 16 33 H 0.04 0.66 7.39 -51.93 -0.38 0.27 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.66 7.39 -51.93 -0.38 0.27 16 39 H 0.37 8.38 5.95 -40.82 -0.24 8.14 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 318.12 15.07 4.79 4.79 Total: -1.00 -28.63 318.12 -7.82 -36.44 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.61 Total: 9.60 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -2.04 Total: -23.79 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.75 Total: -43.51 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.71 Total: 16.47 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.63 -7.82 -36.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000202246480.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.203 kcal (2) G-P(sol) polarization free energy of solvation -28.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds