Wall clock time and date at job start Mon Mar 30 2020 06:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52979 * 109.44606 * 256.54746 * 3 2 1 5 5 C 1.53015 * 109.40896 * 59.75387 * 4 3 2 6 6 H 1.08998 * 109.45171 * 299.92245 * 5 4 3 7 7 C 1.53002 * 109.46075 * 179.97438 * 5 4 3 8 8 C 1.52989 * 109.54025 * 59.93615 * 5 4 3 9 9 C 1.53021 * 109.52037 * 300.14814 * 8 5 4 10 10 H 1.09002 * 109.50073 * 179.97438 * 9 8 5 11 11 C 1.50706 * 109.48695 * 299.96381 * 9 8 5 12 12 H 1.08002 * 119.99147 * 31.49815 * 11 9 8 13 13 C 1.37875 * 120.00423 * 211.49596 * 11 9 8 14 14 N 1.31514 * 119.99562 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00030 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47077 * 59.99956 * 15 13 11 17 17 H 1.48498 * 109.47123 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47134 * 300.00017 * 15 13 11 19 19 C 1.52966 * 109.39724 * 59.94395 * 9 8 5 20 20 H 1.09005 * 109.56644 * 59.86959 * 19 9 8 21 21 C 1.53076 * 109.60591 * 180.02562 * 19 9 8 22 22 C 1.53149 * 109.09021 * 177.65802 * 21 19 9 23 23 C 1.53029 * 109.32290 * 302.40121 * 22 21 19 24 24 N 1.46806 * 109.44647 * 136.39651 * 3 2 1 25 25 H 4.44578 * 5.63576 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.48491 * 179.74064 * 4 3 2 27 27 H 1.09002 * 109.47560 * 299.77682 * 4 3 2 28 28 H 1.08998 * 109.47237 * 299.93433 * 7 5 4 29 29 H 1.09004 * 109.46930 * 59.93510 * 7 5 4 30 30 H 1.08999 * 109.46925 * 179.97438 * 7 5 4 31 31 H 1.08997 * 109.46221 * 180.13069 * 8 5 4 32 32 H 1.09001 * 109.45350 * 60.15794 * 8 5 4 33 33 H 0.97007 * 119.99729 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.53487 * 297.53593 * 21 19 9 35 35 H 1.08999 * 109.53847 * 57.69512 * 21 19 9 36 36 H 1.09000 * 109.49573 * 62.35873 * 22 21 19 37 37 H 1.08997 * 109.49345 * 182.44899 * 22 21 19 38 38 H 1.08999 * 109.45277 * 179.09133 * 23 22 21 39 39 H 1.09003 * 109.45065 * 299.04835 * 23 22 21 40 40 H 1.00905 * 110.99792 * 65.91905 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1551 0.3365 1.4029 5 6 2.6393 -0.7084 2.3947 6 1 1.5494 -0.7033 2.3933 7 6 3.1484 -0.3740 3.7982 8 6 3.1430 -2.0941 1.9862 9 6 2.6368 -2.4284 0.5813 10 1 2.9962 -3.4155 0.2904 11 6 1.1298 -2.4214 0.5750 12 1 0.5902 -1.7574 1.2342 13 6 0.4399 -3.2623 -0.2723 14 7 1.0971 -4.0710 -1.0746 15 14 -1.4280 -3.2530 -0.2805 16 1 -1.9146 -1.8982 -0.6452 17 1 -1.9236 -4.2410 -1.2721 18 1 -1.9308 -3.6127 1.0696 19 6 3.1561 -1.3835 -0.4078 20 1 4.2461 -1.3856 -0.4024 21 6 2.6519 -1.7131 -1.8151 22 6 3.1295 -0.6285 -2.7851 23 6 2.6246 0.7352 -2.3083 24 7 3.1342 1.0033 -0.9547 25 1 -1.0501 0.0002 -0.0001 26 1 4.2450 0.3326 1.4047 27 1 2.7944 1.3231 1.6940 28 1 4.2384 -0.3793 3.8002 29 1 2.7893 0.6131 4.0893 30 1 2.7807 -1.1180 4.5049 31 1 2.7730 -2.8376 2.6920 32 1 4.2330 -2.1000 1.9905 33 1 0.6118 -4.6630 -1.6704 34 1 3.0469 -2.6801 -2.1265 35 1 1.5625 -1.7479 -1.8131 36 1 4.2190 -0.6224 -2.8162 37 1 2.7378 -0.8334 -3.7813 38 1 2.9769 1.5108 -2.9884 39 1 1.5347 0.7336 -2.2928 40 1 2.8917 1.9359 -0.6553 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000205920317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:30 Heat of formation + Delta-G solvation = 44.972294 kcal Electronic energy + Delta-G solvation = -19903.269894 eV Core-core repulsion = 17297.654603 eV Total energy + Delta-G solvation = -2605.615291 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.75992 -35.68824 -33.49667 -32.06268 -30.96573 -30.12723 -28.68409 -25.94347 -24.69028 -22.72836 -21.81667 -20.69807 -19.56925 -18.79273 -16.63814 -15.69743 -15.52259 -14.56928 -14.50304 -14.14761 -13.61012 -13.25736 -13.08634 -12.59540 -12.26102 -12.08680 -11.72615 -11.58931 -11.45890 -10.87108 -10.80334 -10.75358 -10.69522 -10.51341 -10.37485 -9.93376 -9.82693 -9.45765 -9.23171 -9.00612 -8.92127 -8.58980 -8.34048 -8.08465 -7.99977 -5.89210 -3.81247 3.33052 3.39240 3.41164 3.91158 4.02461 4.52750 4.81452 5.27291 5.42366 5.55227 5.64445 5.67623 5.73010 5.84649 5.97275 6.00771 6.19212 6.28796 6.29328 6.39739 6.41866 6.54427 6.55794 6.60420 6.64077 6.76106 6.80929 6.92919 7.00825 7.07578 7.22044 7.37025 7.41511 7.54745 7.77952 7.82023 7.96345 8.00069 8.08166 8.56893 8.85028 9.17213 9.73886 11.19838 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017978 B = 0.013315 C = 0.010184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.071097 B = 2102.327226 C = 2748.849873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.128 4.128 3 C 0.232 3.768 4 C -0.089 4.089 5 C -0.087 4.087 6 H 0.079 0.921 7 C -0.144 4.144 8 C -0.101 4.101 9 C 0.035 3.965 10 H 0.056 0.944 11 C -0.486 4.486 12 H 0.064 0.936 13 C 0.066 3.934 14 N -0.893 5.893 15 Si 0.873 3.127 16 H -0.273 1.273 17 H -0.294 1.294 18 H -0.281 1.281 19 C -0.048 4.048 20 H 0.044 0.956 21 C -0.093 4.093 22 C -0.123 4.123 23 C 0.060 3.940 24 N -0.676 5.676 25 H 0.194 0.806 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.033 0.967 33 H 0.256 0.744 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.032 0.968 40 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 8.031 1.722 8.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.130 4.130 3 C 0.142 3.858 4 C -0.127 4.127 5 C -0.106 4.106 6 H 0.097 0.903 7 C -0.201 4.201 8 C -0.138 4.138 9 C 0.016 3.984 10 H 0.074 0.926 11 C -0.524 4.524 12 H 0.082 0.918 13 C -0.134 4.134 14 N -0.532 5.532 15 Si 0.702 3.298 16 H -0.199 1.199 17 H -0.220 1.220 18 H -0.207 1.207 19 C -0.067 4.067 20 H 0.062 0.938 21 C -0.131 4.131 22 C -0.160 4.160 23 C -0.069 4.069 24 N -0.304 5.304 25 H 0.211 0.789 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.900 7.571 1.449 8.638 hybrid contribution -2.397 0.185 -0.076 2.405 sum 1.503 7.755 1.373 8.018 Atomic orbital electron populations 1.24341 0.95437 1.04452 1.02105 1.23132 0.94397 0.96905 0.98561 1.18072 0.82636 0.93760 0.91321 1.21494 1.00287 0.97791 0.93130 1.21094 1.01476 0.95582 0.92442 0.90290 1.21852 1.00445 1.00217 0.97623 1.21637 0.97343 0.94726 1.00124 1.18931 0.95901 0.95126 0.88446 0.92571 1.21279 0.90797 1.20166 1.20190 0.91796 1.24787 0.96975 0.95680 0.96002 1.69957 1.34603 1.24272 1.24395 0.86990 0.87779 0.77627 0.77430 1.19883 1.21975 1.20744 1.21232 0.96572 0.91979 0.96949 0.93810 1.21474 1.03066 0.95864 0.92647 1.21732 1.00239 0.95216 0.98859 1.21905 0.97437 0.97776 0.89773 1.60901 1.62082 1.05126 1.02272 0.78851 0.91579 0.93409 0.93421 0.93823 0.93178 0.93250 0.94869 0.93425 0.91969 0.89928 0.92635 0.93120 0.92296 0.94976 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -5.16 15.56 29.55 0.46 -4.70 16 2 C -0.13 -2.68 5.45 -37.12 -0.20 -2.89 16 3 C 0.23 4.50 0.66 -134.43 -0.09 4.41 16 4 C -0.09 -1.56 4.24 -26.73 -0.11 -1.67 16 5 C -0.09 -1.59 2.37 -90.62 -0.21 -1.81 16 6 H 0.08 1.63 5.61 -51.93 -0.29 1.34 16 7 C -0.14 -2.17 9.19 37.16 0.34 -1.83 16 8 C -0.10 -2.04 4.72 -26.73 -0.13 -2.17 16 9 C 0.03 0.82 2.26 -91.78 -0.21 0.61 16 10 H 0.06 1.50 7.40 -51.93 -0.38 1.11 16 11 C -0.49 -12.23 4.29 -34.44 -0.15 -12.38 16 12 H 0.06 1.63 4.07 -52.49 -0.21 1.42 16 13 C 0.07 1.73 4.17 -17.82 -0.07 1.66 16 14 N -0.89 -24.58 11.22 55.43 0.62 -23.95 16 15 Si 0.87 21.00 28.39 -169.99 -4.83 16.18 16 16 H -0.27 -6.31 6.18 56.52 0.35 -5.96 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.05 -1.03 1.88 -90.57 -0.17 -1.20 16 20 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 21 C -0.09 -2.08 3.79 -26.62 -0.10 -2.18 16 22 C -0.12 -2.29 6.09 -26.64 -0.16 -2.45 16 23 C 0.06 1.05 6.30 -3.70 -0.02 1.02 16 24 N -0.68 -11.70 6.32 -102.71 -0.65 -12.35 16 25 H 0.19 3.78 7.09 -54.09 -0.38 3.39 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.06 1.50 7.87 -51.93 -0.41 1.09 16 35 H 0.08 2.09 5.20 -51.93 -0.27 1.82 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.61 6.98 -51.93 -0.36 0.24 16 40 H 0.33 5.08 8.79 -39.29 -0.35 4.73 16 LS Contribution 288.19 15.07 4.34 4.34 Total: -1.00 -26.39 288.19 -7.84 -34.23 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.50 Total: 7.13 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: -0.83 Total: -25.57 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.03 Total: -36.31 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.83 Total: 16.18 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.39 -7.84 -34.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205920317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.204 kcal (2) G-P(sol) polarization free energy of solvation -26.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds