Wall clock time and date at job start Mon Mar 30 2020 06:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52979 * 109.44606 * 256.54746 * 3 2 1 5 5 C 1.53015 * 109.40896 * 59.75387 * 4 3 2 6 6 H 1.08998 * 109.45171 * 299.92245 * 5 4 3 7 7 C 1.53002 * 109.46075 * 179.97438 * 5 4 3 8 8 C 1.52989 * 109.54025 * 59.93615 * 5 4 3 9 9 C 1.53021 * 109.52037 * 300.14814 * 8 5 4 10 10 H 1.09002 * 109.50073 * 179.97438 * 9 8 5 11 11 C 1.50706 * 109.48695 * 299.96381 * 9 8 5 12 12 H 1.08002 * 119.99147 * 31.49815 * 11 9 8 13 13 C 1.37875 * 120.00423 * 211.49596 * 11 9 8 14 14 N 1.31514 * 119.99562 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00030 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47077 * 59.99956 * 15 13 11 17 17 H 1.48498 * 109.47123 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47134 * 300.00017 * 15 13 11 19 19 C 1.52966 * 109.39724 * 59.94395 * 9 8 5 20 20 H 1.09005 * 109.56644 * 59.86959 * 19 9 8 21 21 C 1.53076 * 109.60591 * 180.02562 * 19 9 8 22 22 C 1.53149 * 109.09021 * 177.65802 * 21 19 9 23 23 C 1.53029 * 109.32290 * 302.40121 * 22 21 19 24 24 N 1.46806 * 109.44647 * 136.39651 * 3 2 1 25 25 H 4.44578 * 5.63576 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.48491 * 179.74064 * 4 3 2 27 27 H 1.09002 * 109.47560 * 299.77682 * 4 3 2 28 28 H 1.08998 * 109.47237 * 299.93433 * 7 5 4 29 29 H 1.09004 * 109.46930 * 59.93510 * 7 5 4 30 30 H 1.08999 * 109.46925 * 179.97438 * 7 5 4 31 31 H 1.08997 * 109.46221 * 180.13069 * 8 5 4 32 32 H 1.09001 * 109.45350 * 60.15794 * 8 5 4 33 33 H 0.97007 * 119.99729 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.53487 * 297.53593 * 21 19 9 35 35 H 1.08999 * 109.53847 * 57.69512 * 21 19 9 36 36 H 1.09000 * 109.49573 * 62.35873 * 22 21 19 37 37 H 1.08997 * 109.49345 * 182.44899 * 22 21 19 38 38 H 1.08999 * 109.45277 * 179.09133 * 23 22 21 39 39 H 1.09003 * 109.45065 * 299.04835 * 23 22 21 40 40 H 1.00905 * 110.99792 * 65.91905 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1551 0.3365 1.4029 5 6 2.6393 -0.7084 2.3947 6 1 1.5494 -0.7033 2.3933 7 6 3.1484 -0.3740 3.7982 8 6 3.1430 -2.0941 1.9862 9 6 2.6368 -2.4284 0.5813 10 1 2.9962 -3.4155 0.2904 11 6 1.1298 -2.4214 0.5750 12 1 0.5902 -1.7574 1.2342 13 6 0.4399 -3.2623 -0.2723 14 7 1.0971 -4.0710 -1.0746 15 14 -1.4280 -3.2530 -0.2805 16 1 -1.9146 -1.8982 -0.6452 17 1 -1.9236 -4.2410 -1.2721 18 1 -1.9308 -3.6127 1.0696 19 6 3.1561 -1.3835 -0.4078 20 1 4.2461 -1.3856 -0.4024 21 6 2.6519 -1.7131 -1.8151 22 6 3.1295 -0.6285 -2.7851 23 6 2.6246 0.7352 -2.3083 24 7 3.1342 1.0033 -0.9547 25 1 -1.0501 0.0002 -0.0001 26 1 4.2450 0.3326 1.4047 27 1 2.7944 1.3231 1.6940 28 1 4.2384 -0.3793 3.8002 29 1 2.7893 0.6131 4.0893 30 1 2.7807 -1.1180 4.5049 31 1 2.7730 -2.8376 2.6920 32 1 4.2330 -2.1000 1.9905 33 1 0.6118 -4.6630 -1.6704 34 1 3.0469 -2.6801 -2.1265 35 1 1.5625 -1.7479 -1.8131 36 1 4.2190 -0.6224 -2.8162 37 1 2.7378 -0.8334 -3.7813 38 1 2.9769 1.5108 -2.9884 39 1 1.5347 0.7336 -2.2928 40 1 2.8917 1.9359 -0.6553 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000205920317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:29 Heat of formation + Delta-G solvation = 29.821013 kcal Electronic energy + Delta-G solvation = -19903.926903 eV Core-core repulsion = 17297.654603 eV Total energy + Delta-G solvation = -2606.272300 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.36152 -37.19155 -35.28189 -33.69306 -32.73749 -31.66175 -30.33280 -27.31156 -26.62837 -24.30759 -23.37504 -22.24384 -21.31811 -20.38066 -18.39823 -17.47369 -17.04275 -16.38604 -16.07462 -15.70394 -15.20900 -14.83612 -14.76775 -14.16822 -13.77375 -13.55127 -13.44047 -13.28388 -12.86411 -12.72494 -12.52563 -12.45300 -12.22043 -12.12118 -12.00291 -11.62446 -11.41646 -11.18128 -10.89721 -10.71728 -10.61729 -10.39198 -10.18055 -9.88875 -9.51373 -7.93782 -5.87610 1.38407 1.40739 1.44318 2.28916 2.36931 2.52483 3.31537 3.46386 3.74626 4.08249 4.18176 4.24428 4.26027 4.41145 4.51450 4.59533 4.71948 4.80872 4.92159 4.94888 4.99863 5.04059 5.06834 5.13604 5.16098 5.21611 5.24320 5.38324 5.41300 5.47109 5.62839 5.68234 5.73377 5.82033 5.94147 6.03795 6.07065 6.26986 6.57604 6.63172 7.15012 7.21078 7.68313 9.14524 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017978 B = 0.013315 C = 0.010184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.071097 B = 2102.327226 C = 2748.849873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.135 4.135 3 C 0.233 3.767 4 C -0.085 4.085 5 C -0.083 4.083 6 H 0.053 0.947 7 C -0.137 4.137 8 C -0.097 4.097 9 C 0.029 3.971 10 H 0.013 0.987 11 C -0.471 4.471 12 H 0.063 0.937 13 C 0.023 3.977 14 N -0.921 5.921 15 Si 0.910 3.090 16 H -0.257 1.257 17 H -0.303 1.303 18 H -0.282 1.282 19 C -0.045 4.045 20 H 0.046 0.954 21 C -0.085 4.085 22 C -0.118 4.118 23 C 0.063 3.937 24 N -0.667 5.667 25 H 0.204 0.796 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.048 0.952 33 H 0.248 0.752 34 H 0.029 0.971 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.015 0.985 40 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 10.663 2.476 11.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.137 4.137 3 C 0.142 3.858 4 C -0.123 4.123 5 C -0.102 4.102 6 H 0.071 0.929 7 C -0.194 4.194 8 C -0.135 4.135 9 C 0.010 3.990 10 H 0.031 0.969 11 C -0.510 4.510 12 H 0.081 0.919 13 C -0.174 4.174 14 N -0.562 5.562 15 Si 0.738 3.262 16 H -0.182 1.182 17 H -0.230 1.230 18 H -0.208 1.208 19 C -0.065 4.065 20 H 0.065 0.935 21 C -0.123 4.123 22 C -0.156 4.156 23 C -0.066 4.066 24 N -0.296 5.296 25 H 0.221 0.779 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.033 0.967 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.649 10.235 2.218 11.458 hybrid contribution -2.609 -0.677 -0.313 2.713 sum 2.040 9.557 1.905 9.957 Atomic orbital electron populations 1.24760 0.96157 1.04497 1.02631 1.23631 0.95145 0.96733 0.98166 1.18060 0.81715 0.92942 0.93088 1.21492 1.01052 0.98419 0.91306 1.21000 0.99864 0.94372 0.94934 0.92895 1.21774 1.01362 1.01211 0.95091 1.21557 0.98220 0.96114 0.97615 1.18912 0.95107 0.93881 0.91111 0.96886 1.21440 0.91770 1.18900 1.18865 0.91891 1.25288 0.99685 0.96077 0.96344 1.70097 1.35313 1.25358 1.25474 0.86369 0.84789 0.78063 0.76930 1.18157 1.23008 1.20782 1.21085 0.96526 0.93057 0.95796 0.93535 1.21284 1.00738 0.95842 0.94456 1.21681 1.00873 0.94820 0.98261 1.21906 0.96432 0.97752 0.90483 1.60845 1.61489 1.05525 1.01752 0.77923 0.90181 0.91213 0.91900 0.91987 0.93167 0.94463 0.93310 0.94257 0.95206 0.93206 0.91516 0.92281 0.88798 0.96662 0.83490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.77 15.56 74.32 1.16 -9.61 16 2 C -0.13 -5.48 5.45 31.13 0.17 -5.31 16 3 C 0.23 8.53 0.66 1.75 0.00 8.53 16 4 C -0.08 -2.69 4.24 30.59 0.13 -2.56 16 5 C -0.08 -2.84 2.37 -10.79 -0.03 -2.87 16 6 H 0.05 2.11 5.61 -2.39 -0.01 2.09 16 7 C -0.14 -3.66 9.19 71.98 0.66 -3.00 16 8 C -0.10 -3.89 4.72 30.60 0.14 -3.74 16 9 C 0.03 1.38 2.26 -11.54 -0.03 1.36 16 10 H 0.01 0.72 7.40 -2.39 -0.02 0.70 16 11 C -0.47 -24.09 4.29 25.60 0.11 -23.98 16 12 H 0.06 3.22 4.07 -2.91 -0.01 3.21 16 13 C 0.02 1.23 4.17 84.65 0.35 1.59 16 14 N -0.92 -52.95 11.22 21.45 0.24 -52.71 16 15 Si 0.91 43.60 28.39 68.60 1.95 45.55 16 16 H -0.26 -11.50 6.18 99.48 0.62 -10.89 16 17 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 18 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 19 C -0.05 -1.94 1.88 -10.76 -0.02 -1.96 16 20 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 21 C -0.09 -3.87 3.79 30.67 0.12 -3.76 16 22 C -0.12 -4.26 6.09 30.65 0.19 -4.07 16 23 C 0.06 2.02 6.30 86.28 0.54 2.57 16 24 N -0.67 -20.89 6.32 -478.86 -3.03 -23.91 16 25 H 0.20 7.68 7.09 -4.41 -0.03 7.65 16 26 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 34 H 0.03 1.49 7.87 -2.39 -0.02 1.47 16 35 H 0.05 2.58 5.20 -2.39 -0.01 2.57 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.02 0.54 6.98 -2.39 -0.02 0.53 16 40 H 0.35 9.22 8.79 -89.69 -0.79 8.43 16 Total: -1.00 -58.24 288.19 2.80 -55.44 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.13 Total: 22.46 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 3.50 Total: -46.82 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -2.78 Total: -76.62 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.95 Total: 45.55 kcal Total: -58.24 2.80 -55.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205920317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.263 kcal (2) G-P(sol) polarization free energy of solvation -58.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds