Wall clock time and date at job start Mon Mar 30 2020 06:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47054 * 2 1 4 4 C 1.52995 * 109.47195 * 185.02689 * 3 2 1 5 5 H 1.09003 * 109.47141 * 54.85650 * 4 3 2 6 6 C 1.53003 * 109.47596 * 174.85445 * 4 3 2 7 7 N 1.46499 * 109.47348 * 294.85873 * 4 3 2 8 8 C 1.46499 * 119.99587 * 294.44224 * 7 4 3 9 9 C 1.50707 * 109.47245 * 263.27846 * 8 7 4 10 10 H 1.08001 * 119.99420 * 4.00400 * 9 8 7 11 11 C 1.37868 * 120.00165 * 183.99167 * 9 8 7 12 12 N 1.31516 * 120.00040 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00015 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47118 * 90.00059 * 13 11 9 15 15 H 1.48502 * 109.47186 * 209.99477 * 13 11 9 16 16 H 1.48491 * 109.47292 * 329.99544 * 13 11 9 17 17 C 1.39675 * 120.00462 * 114.44124 * 7 4 3 18 18 C 1.38907 * 120.07621 * 175.17466 * 17 7 4 19 19 C 1.38101 * 119.92244 * 179.72463 * 18 17 7 20 20 C 1.38287 * 120.07827 * 0.27824 * 19 18 17 21 21 C 1.38283 * 120.14894 * 359.97256 * 20 19 18 22 22 C 1.38112 * 120.07204 * 0.02562 * 21 20 19 23 23 H 1.08997 * 109.47233 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47076 * 300.00310 * 1 2 3 25 25 H 1.09007 * 109.46872 * 60.00467 * 1 2 3 26 26 H 1.08996 * 109.47526 * 239.99954 * 2 1 3 27 27 H 1.09007 * 109.46872 * 119.99533 * 2 1 3 28 28 H 1.09001 * 109.47133 * 65.02722 * 3 2 1 29 29 H 1.09005 * 109.46893 * 305.02757 * 3 2 1 30 30 H 1.08998 * 109.47070 * 294.69689 * 6 4 3 31 31 H 1.09002 * 109.46665 * 54.69031 * 6 4 3 32 32 H 1.08997 * 109.47415 * 174.68920 * 6 4 3 33 33 H 1.08993 * 109.47760 * 23.28189 * 8 7 4 34 34 H 1.09001 * 109.47199 * 143.28704 * 8 7 4 35 35 H 0.97004 * 120.00135 * 180.02562 * 12 11 9 36 36 H 1.07998 * 120.03535 * 359.97438 * 18 17 7 37 37 H 1.08007 * 119.96343 * 180.29711 * 19 18 17 38 38 H 1.08002 * 119.92406 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.96263 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.03222 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5647 1.4444 -0.1264 5 1 3.8567 0.8781 -1.0108 6 6 4.0641 2.8849 -0.2554 7 7 4.1543 0.8280 1.0647 8 6 4.0101 1.4745 2.3714 9 6 5.2435 2.2882 2.6681 10 1 6.0253 2.3730 1.9279 11 6 5.3735 2.9245 3.8843 12 7 6.4495 3.6350 4.1430 13 14 4.0213 2.7774 5.1646 14 1 4.2866 1.6015 6.0320 15 1 3.9900 4.0080 5.9952 16 1 2.7124 2.6057 4.4847 17 6 4.8537 -0.3759 0.9545 18 6 5.4983 -0.9105 2.0628 19 6 6.1842 -2.1040 1.9517 20 6 6.2346 -2.7639 0.7375 21 6 5.5984 -2.2319 -0.3691 22 6 4.9107 -1.0388 -0.2649 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.7520 1.9297 0.9316 29 1 1.6049 1.9817 -0.8416 30 1 3.7015 3.3128 -1.1900 31 1 3.6924 3.4746 0.5825 32 1 5.1540 2.8934 -0.2506 33 1 3.1379 2.1280 2.3593 34 1 3.8833 0.7134 3.1413 35 1 6.5412 4.0824 4.9988 36 1 5.4597 -0.3954 3.0113 37 1 6.6816 -2.5226 2.8142 38 1 6.7714 -3.6973 0.6535 39 1 5.6394 -2.7501 -1.3157 40 1 4.4137 -0.6241 -1.1295 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233275511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:46 Heat of formation + Delta-G solvation = 17.368172 kcal Electronic energy + Delta-G solvation = -18603.451898 eV Core-core repulsion = 15996.639603 eV Total energy + Delta-G solvation = -2606.812296 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.15693 -36.84905 -34.05526 -32.52332 -31.14869 -30.28385 -29.00453 -26.69115 -26.21999 -22.96347 -21.99480 -21.34776 -20.70025 -18.87403 -17.24187 -16.87169 -15.33342 -14.95944 -14.59971 -14.17699 -14.02270 -13.67009 -13.30323 -12.98815 -12.85836 -12.46503 -12.29838 -12.16351 -11.81238 -11.74853 -11.54071 -11.19569 -10.99279 -10.78289 -10.69321 -10.54416 -10.42583 -10.24729 -10.10068 -9.84708 -9.45739 -8.92339 -8.63255 -8.25895 -6.38025 -6.11958 -4.10501 2.11092 2.32763 3.21991 3.29981 3.31320 4.00033 4.33986 4.59430 5.00372 5.19106 5.21331 5.32380 5.41002 5.54045 5.65307 5.75284 5.77356 5.83756 5.95038 6.03986 6.09124 6.14718 6.18368 6.21350 6.32687 6.40015 6.48285 6.55304 6.59729 6.63399 6.80798 6.86263 6.96636 7.13065 7.15058 7.30209 7.56451 7.61670 8.12376 8.43405 8.55563 8.97533 9.48820 11.00979 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.009674 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.683251 B = 2893.639891 C = 3888.206689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.132 4.132 4 C 0.149 3.851 5 H 0.078 0.922 6 C -0.154 4.154 7 N -0.600 5.600 8 C 0.225 3.775 9 C -0.525 4.525 10 H 0.078 0.922 11 C 0.072 3.928 12 N -0.895 5.895 13 Si 0.868 3.132 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.267 1.267 17 C 0.242 3.758 18 C -0.183 4.183 19 C -0.078 4.078 20 C -0.203 4.203 21 C -0.080 4.080 22 C -0.219 4.219 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.028 0.972 34 H 0.020 0.980 35 H 0.264 0.736 36 H 0.131 0.869 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.737 -7.730 -8.078 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.170 4.170 4 C 0.044 3.956 5 H 0.096 0.904 6 C -0.212 4.212 7 N -0.306 5.306 8 C 0.103 3.897 9 C -0.564 4.564 10 H 0.096 0.904 11 C -0.130 4.130 12 N -0.534 5.534 13 Si 0.695 3.305 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.191 1.191 17 C 0.136 3.864 18 C -0.205 4.205 19 C -0.097 4.097 20 C -0.223 4.223 21 C -0.099 4.099 22 C -0.242 4.242 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.149 0.851 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.777 -7.392 -7.901 13.325 hybrid contribution -0.502 0.132 0.871 1.014 sum -8.279 -7.260 -7.030 13.065 Atomic orbital electron populations 1.21771 0.96553 1.01031 1.01352 1.21457 0.94896 0.97125 1.02189 1.22062 0.95964 0.96815 1.02202 1.20942 0.91645 0.94423 0.88575 0.90366 1.22091 1.02369 0.95831 1.00879 1.46818 1.55351 1.20477 1.07909 1.19525 0.97472 0.92498 0.80168 1.21479 1.03861 1.29457 1.01609 0.90409 1.24888 0.95269 0.94981 0.97905 1.69900 1.27148 1.32654 1.23675 0.86975 0.83127 0.77989 0.82382 1.20035 1.21108 1.19140 1.17857 0.89701 0.85584 0.93256 1.20908 1.02570 0.97692 0.99342 1.20833 0.97383 0.94538 0.96962 1.20660 1.06290 1.01598 0.93783 1.20667 0.96600 0.95057 0.97567 1.20589 1.08472 0.98493 0.96620 0.93223 0.93004 0.93161 0.92494 0.91686 0.91504 0.91810 0.93457 0.91413 0.91858 0.95377 0.96234 0.92628 0.85138 0.87165 0.87703 0.87475 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.12 -1.64 5.76 -26.73 -0.15 -1.79 16 3 C -0.13 -1.93 4.70 -26.73 -0.13 -2.06 16 4 C 0.15 2.49 2.53 -67.93 -0.17 2.32 16 5 H 0.08 1.21 5.38 -51.93 -0.28 0.94 16 6 C -0.15 -2.67 8.48 37.16 0.32 -2.36 16 7 N -0.60 -11.91 2.05 -165.55 -0.34 -12.25 16 8 C 0.22 5.10 3.05 -5.19 -0.02 5.09 16 9 C -0.53 -14.06 8.59 -34.44 -0.30 -14.36 16 10 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 11 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 12 N -0.90 -26.68 13.96 55.43 0.77 -25.91 16 13 Si 0.87 20.63 27.39 -169.99 -4.66 15.98 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.27 -6.05 6.66 56.52 0.38 -5.67 16 17 C 0.24 4.76 6.50 -83.79 -0.54 4.21 16 18 C -0.18 -3.72 9.02 -39.38 -0.36 -4.07 16 19 C -0.08 -1.39 10.04 -39.61 -0.40 -1.78 16 20 C -0.20 -3.27 10.04 -39.55 -0.40 -3.67 16 21 C -0.08 -1.27 10.04 -39.61 -0.40 -1.67 16 22 C -0.22 -3.77 9.27 -39.38 -0.37 -4.13 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.03 7.90 -51.92 -0.41 0.62 16 28 H 0.07 1.08 6.80 -51.93 -0.35 0.73 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.30 7.45 -51.93 -0.39 0.91 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.03 0.64 5.79 -51.93 -0.30 0.34 16 34 H 0.02 0.46 6.02 -51.93 -0.31 0.15 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.13 2.91 6.12 -52.49 -0.32 2.59 16 37 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.11 1.75 5.81 -52.49 -0.31 1.44 16 LS Contribution 316.51 15.07 4.77 4.77 Total: -1.00 -28.56 316.51 -8.57 -37.13 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.48 Total: 4.03 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -2.63 Total: -23.75 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.43 Total: -38.16 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.66 Total: 15.98 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.56 -8.57 -37.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233275511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.501 kcal (2) G-P(sol) polarization free energy of solvation -28.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds