Wall clock time and date at job start Mon Mar 30 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.46982 * 2 1 4 4 C 1.52996 * 109.46982 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47489 * 305.00316 * 4 3 2 6 6 C 1.52998 * 109.47043 * 185.00146 * 4 3 2 7 7 N 1.46507 * 109.47246 * 65.00227 * 4 3 2 8 8 C 1.46497 * 119.99781 * 65.51228 * 7 4 3 9 9 C 1.50692 * 109.47285 * 270.00175 * 8 7 4 10 10 H 1.08004 * 120.00183 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99978 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00112 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99902 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47049 * 89.99932 * 13 11 9 15 15 H 1.48498 * 109.46834 * 209.99683 * 13 11 9 16 16 H 1.48493 * 109.47437 * 329.99703 * 13 11 9 17 17 C 1.39676 * 119.99899 * 245.51563 * 7 4 3 18 18 C 1.38909 * 120.07485 * 354.28695 * 17 7 4 19 19 C 1.38101 * 119.92482 * 180.02562 * 18 17 7 20 20 C 1.38281 * 120.07727 * 0.02562 * 19 18 17 21 21 C 1.38290 * 120.14464 * 0.27214 * 20 19 18 22 22 C 1.38104 * 120.07495 * 359.45010 * 21 20 19 23 23 H 1.09004 * 109.47159 * 300.00201 * 1 2 3 24 24 H 1.09004 * 109.47290 * 60.00135 * 1 2 3 25 25 H 1.08997 * 109.46838 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47446 * 240.00465 * 2 1 3 27 27 H 1.08996 * 109.47455 * 120.00151 * 2 1 3 28 28 H 1.08999 * 109.46650 * 59.99977 * 3 2 1 29 29 H 1.09004 * 109.46998 * 300.00044 * 3 2 1 30 30 H 1.08998 * 109.47573 * 59.99891 * 6 4 3 31 31 H 1.09004 * 109.47466 * 180.02562 * 6 4 3 32 32 H 1.09007 * 109.47363 * 299.99776 * 6 4 3 33 33 H 1.08999 * 109.47484 * 30.00339 * 8 7 4 34 34 H 1.09003 * 109.46547 * 149.99895 * 8 7 4 35 35 H 0.97000 * 119.99612 * 179.97438 * 12 11 9 36 36 H 1.08005 * 120.03781 * 0.02562 * 18 17 7 37 37 H 1.08007 * 119.96120 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.93176 * 180.02562 * 20 19 18 39 39 H 1.08006 * 119.95833 * 179.70200 * 21 20 19 40 40 H 1.07998 * 120.03366 * 180.27532 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9330 0.8533 0.8426 6 6 4.0798 2.8796 0.1264 7 7 4.0588 0.8587 -1.2509 8 6 3.8077 1.5391 -2.5238 9 6 2.5027 1.0565 -3.1024 10 1 1.9188 0.3167 -2.5750 11 6 2.0545 1.5588 -4.3057 12 7 2.7656 2.4594 -4.9482 13 14 0.4370 0.9600 -5.0233 14 1 -0.6701 1.8211 -4.5351 15 1 0.4986 1.0260 -6.5056 16 1 0.1966 -0.4428 -4.5999 17 6 4.7643 -0.3466 -1.2305 18 6 5.1064 -0.9325 -0.0184 19 6 5.8044 -2.1241 -0.0018 20 6 6.1632 -2.7336 -1.1901 21 6 5.8295 -2.1499 -2.3985 22 6 5.1266 -0.9613 -2.4223 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.7161 3.3141 1.0575 31 1 5.1699 2.8797 0.1264 32 1 3.7169 3.4690 -0.7157 33 1 3.7553 2.6149 -2.3567 34 1 4.6174 1.3185 -3.2195 35 1 2.4504 2.8124 -5.7949 36 1 4.8268 -0.4568 0.9100 37 1 6.0703 -2.5804 0.9403 38 1 6.7086 -3.6656 -1.1744 39 1 6.1155 -2.6261 -3.3247 40 1 4.8625 -0.5083 -3.3664 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233333665.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:49 Heat of formation + Delta-G solvation = 14.999724 kcal Electronic energy + Delta-G solvation = -18764.965077 eV Core-core repulsion = 16158.050078 eV Total energy + Delta-G solvation = -2606.914999 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.07645 -36.76429 -33.66437 -32.66867 -31.06725 -30.19844 -28.62141 -26.32204 -26.13427 -23.19972 -21.97254 -21.19341 -20.57447 -18.83015 -17.17507 -16.52931 -15.13614 -14.98500 -14.31255 -14.16916 -13.84727 -13.64355 -13.22224 -12.85418 -12.73334 -12.42406 -12.19913 -12.02466 -11.66640 -11.51969 -11.25737 -11.11458 -10.82906 -10.70282 -10.65944 -10.36322 -10.32853 -10.10710 -9.97754 -9.72090 -9.41694 -8.80738 -8.46569 -8.23325 -6.42871 -5.97919 -4.11512 2.14032 2.36692 3.26234 3.33995 3.37942 4.11113 4.42275 4.63221 5.22199 5.25120 5.43975 5.57261 5.59573 5.64630 5.72885 5.85324 5.87060 5.97652 6.10671 6.13026 6.20554 6.34529 6.36034 6.38962 6.45083 6.49703 6.62990 6.68679 6.71989 6.95207 7.01362 7.11728 7.16783 7.23891 7.32748 7.42948 7.67091 7.88285 8.21916 8.35704 8.57533 8.98650 9.54233 10.99337 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016378 B = 0.009176 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.165707 B = 3050.707484 C = 3597.450855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.129 4.129 4 C 0.149 3.851 5 H 0.074 0.926 6 C -0.162 4.162 7 N -0.603 5.603 8 C 0.249 3.751 9 C -0.524 4.524 10 H 0.068 0.932 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.888 3.112 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.242 3.758 18 C -0.223 4.223 19 C -0.079 4.079 20 C -0.207 4.207 21 C -0.078 4.078 22 C -0.188 4.188 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.897 -3.924 9.395 10.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.168 4.168 4 C 0.044 3.956 5 H 0.092 0.908 6 C -0.220 4.220 7 N -0.308 5.308 8 C 0.129 3.871 9 C -0.562 4.562 10 H 0.086 0.914 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.716 3.284 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.198 1.198 17 C 0.136 3.864 18 C -0.246 4.246 19 C -0.098 4.098 20 C -0.228 4.228 21 C -0.097 4.097 22 C -0.210 4.210 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.773 -3.580 9.207 10.037 hybrid contribution -1.000 -0.265 -0.562 1.177 sum 0.773 -3.845 8.645 9.493 Atomic orbital electron populations 1.21735 0.96890 1.00645 1.01251 1.21451 0.94842 0.97310 1.01840 1.22019 0.95139 0.97236 1.02379 1.20892 0.93790 0.93592 0.87305 0.90803 1.22156 1.00862 0.97203 1.01762 1.47192 1.55803 1.20491 1.07358 1.19234 0.96283 0.92552 0.79033 1.21713 1.05787 1.23728 1.05016 0.91437 1.24943 0.97189 0.95108 0.96846 1.69932 1.38188 1.29242 1.16177 0.86648 0.84110 0.79371 0.78291 1.20741 1.21286 1.19784 1.17914 0.89237 0.86065 0.93231 1.20596 1.08430 0.99321 0.96227 1.20657 0.97189 0.94742 0.97181 1.20635 1.07725 1.01626 0.92780 1.20824 0.96755 0.94931 0.97148 1.20930 1.04682 0.97499 0.97935 0.93696 0.92573 0.93653 0.90538 0.93709 0.93080 0.89308 0.92688 0.92964 0.91431 0.94892 0.95109 0.92838 0.86973 0.87593 0.87818 0.87276 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.12 -2.01 5.48 -26.73 -0.15 -2.16 16 3 C -0.13 -2.23 4.27 -26.73 -0.11 -2.34 16 4 C 0.15 2.57 2.59 -67.93 -0.18 2.40 16 5 H 0.07 1.18 5.31 -51.93 -0.28 0.90 16 6 C -0.16 -2.58 9.06 37.16 0.34 -2.24 16 7 N -0.60 -12.20 1.97 -165.55 -0.33 -12.53 16 8 C 0.25 5.94 4.36 -5.20 -0.02 5.92 16 9 C -0.52 -13.45 7.66 -34.44 -0.26 -13.71 16 10 H 0.07 1.75 5.50 -52.48 -0.29 1.46 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -25.20 13.29 55.43 0.74 -24.46 16 13 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 17 C 0.24 4.81 6.52 -83.79 -0.55 4.27 16 18 C -0.22 -3.89 9.31 -39.38 -0.37 -4.26 16 19 C -0.08 -1.26 10.04 -39.62 -0.40 -1.66 16 20 C -0.21 -3.36 10.04 -39.55 -0.40 -3.75 16 21 C -0.08 -1.37 10.04 -39.61 -0.40 -1.77 16 22 C -0.19 -3.82 9.16 -39.38 -0.36 -4.18 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 1.56 5.99 -51.93 -0.31 1.25 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.09 1.81 6.58 -51.93 -0.34 1.46 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.20 6.51 -51.93 -0.34 0.87 16 33 H 0.03 0.83 6.15 -51.93 -0.32 0.51 16 34 H 0.03 0.80 6.45 -51.93 -0.34 0.47 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.11 1.79 5.74 -52.48 -0.30 1.49 16 37 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 38 H 0.10 1.43 8.06 -52.49 -0.42 1.00 16 39 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.13 2.96 6.26 -52.49 -0.33 2.63 16 LS Contribution 313.99 15.07 4.73 4.73 Total: -1.00 -26.87 313.99 -8.66 -35.53 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.20 Total: 4.65 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -2.58 Total: -23.92 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.41 Total: -36.99 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.87 -8.66 -35.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233333665.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.531 kcal (2) G-P(sol) polarization free energy of solvation -26.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds