Wall clock time and date at job start Mon Mar 30 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.46982 * 2 1 4 4 C 1.52996 * 109.46982 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47489 * 305.00316 * 4 3 2 6 6 C 1.52998 * 109.47043 * 185.00146 * 4 3 2 7 7 N 1.46507 * 109.47246 * 65.00227 * 4 3 2 8 8 C 1.46497 * 119.99781 * 65.51228 * 7 4 3 9 9 C 1.50692 * 109.47285 * 270.00175 * 8 7 4 10 10 H 1.08004 * 120.00183 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99978 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00112 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99902 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47049 * 89.99932 * 13 11 9 15 15 H 1.48498 * 109.46834 * 209.99683 * 13 11 9 16 16 H 1.48493 * 109.47437 * 329.99703 * 13 11 9 17 17 C 1.39676 * 119.99899 * 245.51563 * 7 4 3 18 18 C 1.38909 * 120.07485 * 354.28695 * 17 7 4 19 19 C 1.38101 * 119.92482 * 180.02562 * 18 17 7 20 20 C 1.38281 * 120.07727 * 0.02562 * 19 18 17 21 21 C 1.38290 * 120.14464 * 0.27214 * 20 19 18 22 22 C 1.38104 * 120.07495 * 359.45010 * 21 20 19 23 23 H 1.09004 * 109.47159 * 300.00201 * 1 2 3 24 24 H 1.09004 * 109.47290 * 60.00135 * 1 2 3 25 25 H 1.08997 * 109.46838 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47446 * 240.00465 * 2 1 3 27 27 H 1.08996 * 109.47455 * 120.00151 * 2 1 3 28 28 H 1.08999 * 109.46650 * 59.99977 * 3 2 1 29 29 H 1.09004 * 109.46998 * 300.00044 * 3 2 1 30 30 H 1.08998 * 109.47573 * 59.99891 * 6 4 3 31 31 H 1.09004 * 109.47466 * 180.02562 * 6 4 3 32 32 H 1.09007 * 109.47363 * 299.99776 * 6 4 3 33 33 H 1.08999 * 109.47484 * 30.00339 * 8 7 4 34 34 H 1.09003 * 109.46547 * 149.99895 * 8 7 4 35 35 H 0.97000 * 119.99612 * 179.97438 * 12 11 9 36 36 H 1.08005 * 120.03781 * 0.02562 * 18 17 7 37 37 H 1.08007 * 119.96120 * 180.02562 * 19 18 17 38 38 H 1.08000 * 119.93176 * 180.02562 * 20 19 18 39 39 H 1.08006 * 119.95833 * 179.70200 * 21 20 19 40 40 H 1.07998 * 120.03366 * 180.27532 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9330 0.8533 0.8426 6 6 4.0798 2.8796 0.1264 7 7 4.0588 0.8587 -1.2509 8 6 3.8077 1.5391 -2.5238 9 6 2.5027 1.0565 -3.1024 10 1 1.9188 0.3167 -2.5750 11 6 2.0545 1.5588 -4.3057 12 7 2.7656 2.4594 -4.9482 13 14 0.4370 0.9600 -5.0233 14 1 -0.6701 1.8211 -4.5351 15 1 0.4986 1.0260 -6.5056 16 1 0.1966 -0.4428 -4.5999 17 6 4.7643 -0.3466 -1.2305 18 6 5.1064 -0.9325 -0.0184 19 6 5.8044 -2.1241 -0.0018 20 6 6.1632 -2.7336 -1.1901 21 6 5.8295 -2.1499 -2.3985 22 6 5.1266 -0.9613 -2.4223 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.7161 3.3141 1.0575 31 1 5.1699 2.8797 0.1264 32 1 3.7169 3.4690 -0.7157 33 1 3.7553 2.6149 -2.3567 34 1 4.6174 1.3185 -3.2195 35 1 2.4504 2.8124 -5.7949 36 1 4.8268 -0.4568 0.9100 37 1 6.0703 -2.5804 0.9403 38 1 6.7086 -3.6656 -1.1744 39 1 6.1155 -2.6261 -3.3247 40 1 4.8625 -0.5083 -3.3664 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233333665.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:48 Heat of formation + Delta-G solvation = 3.203190 kcal Electronic energy + Delta-G solvation = -18765.476614 eV Core-core repulsion = 16158.050078 eV Total energy + Delta-G solvation = -2607.426535 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.53243 -38.18003 -35.27365 -34.49144 -32.46204 -31.61522 -30.30484 -27.97085 -27.49840 -25.00466 -23.40335 -22.59187 -21.99100 -20.30537 -18.65547 -18.54354 -16.76557 -16.52901 -15.93551 -15.65514 -15.20481 -15.10216 -14.68178 -14.38203 -14.20453 -14.12162 -13.50094 -13.47923 -13.14889 -13.05290 -12.94169 -12.74523 -12.49802 -12.29622 -12.14621 -11.97365 -11.89549 -11.60704 -11.46505 -11.23648 -11.03654 -10.55952 -10.39056 -9.62779 -8.29081 -7.73167 -6.24244 0.74386 0.97623 1.34696 1.36941 1.46287 2.36655 2.64729 3.14635 3.22568 3.86487 4.10009 4.25718 4.30522 4.31941 4.39976 4.55310 4.58411 4.69716 4.77002 4.81883 4.85217 4.95318 5.02886 5.04058 5.10088 5.12096 5.20264 5.23753 5.35066 5.39974 5.47348 5.53795 5.65394 5.73646 5.81591 5.83317 5.93641 6.20241 6.28908 6.63888 6.96854 7.06710 7.45382 8.91355 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016378 B = 0.009176 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.165707 B = 3050.707484 C = 3597.450855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.124 4.124 4 C 0.144 3.856 5 H 0.098 0.902 6 C -0.155 4.155 7 N -0.610 5.610 8 C 0.270 3.730 9 C -0.516 4.516 10 H 0.063 0.937 11 C 0.010 3.990 12 N -0.931 5.931 13 Si 0.945 3.055 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.272 1.272 17 C 0.219 3.781 18 C -0.220 4.220 19 C -0.073 4.073 20 C -0.200 4.200 21 C -0.083 4.083 22 C -0.222 4.222 23 H 0.069 0.931 24 H 0.033 0.967 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.014 0.986 34 H -0.001 1.001 35 H 0.262 0.738 36 H 0.132 0.868 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.124 0.876 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.823 -5.628 12.263 13.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.163 4.163 4 C 0.041 3.959 5 H 0.116 0.884 6 C -0.213 4.213 7 N -0.317 5.317 8 C 0.148 3.852 9 C -0.555 4.555 10 H 0.082 0.918 11 C -0.188 4.188 12 N -0.572 5.572 13 Si 0.771 3.229 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.197 1.197 17 C 0.114 3.886 18 C -0.243 4.243 19 C -0.091 4.091 20 C -0.221 4.221 21 C -0.102 4.102 22 C -0.245 4.245 23 H 0.088 0.912 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.032 0.968 34 H 0.016 0.984 35 H 0.071 0.929 36 H 0.150 0.850 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.142 0.858 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.703 -5.306 12.099 13.321 hybrid contribution -0.888 0.175 -1.388 1.657 sum 0.815 -5.131 10.711 11.904 Atomic orbital electron populations 1.21713 0.95785 1.01376 1.01363 1.21368 0.95828 0.96851 1.00852 1.21958 0.95157 0.97267 1.01885 1.21144 0.93847 0.94416 0.86510 0.88422 1.22103 1.00811 0.96221 1.02192 1.47014 1.56846 1.20956 1.06847 1.18667 0.94383 0.91610 0.80511 1.21914 1.06082 1.22737 1.04731 0.91850 1.25664 1.00150 0.95472 0.97478 1.70046 1.39815 1.30715 1.16621 0.85744 0.80793 0.78862 0.77479 1.19966 1.21132 1.19654 1.18172 0.90073 0.86196 0.94186 1.20844 1.08013 0.99779 0.95653 1.21134 0.95415 0.93764 0.98805 1.21044 1.06644 1.02391 0.91991 1.21056 0.96128 0.93983 0.98998 1.20828 1.07402 0.99354 0.96883 0.91199 0.94792 0.92653 0.94404 0.91587 0.90012 0.93185 0.89356 0.92971 0.94308 0.96825 0.98351 0.92936 0.85004 0.83647 0.84506 0.85825 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.31 9.91 71.98 0.71 -3.60 16 2 C -0.11 -3.68 5.48 30.60 0.17 -3.51 16 3 C -0.12 -4.17 4.27 30.60 0.13 -4.03 16 4 C 0.14 4.84 2.59 44.99 0.12 4.96 16 5 H 0.10 2.82 5.31 -2.39 -0.01 2.81 16 6 C -0.16 -4.83 9.06 71.98 0.65 -4.18 16 7 N -0.61 -25.35 1.97 -677.69 -1.34 -26.69 16 8 C 0.27 13.76 4.36 85.63 0.37 14.13 16 9 C -0.52 -27.88 7.66 25.60 0.20 -27.68 16 10 H 0.06 3.44 5.50 -2.91 -0.02 3.42 16 11 C 0.01 0.58 5.46 84.65 0.46 1.04 16 12 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 13 Si 0.94 44.48 29.54 68.60 2.03 46.51 16 14 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 16 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 17 C 0.22 8.75 6.52 38.21 0.25 9.00 16 18 C -0.22 -7.14 9.31 22.40 0.21 -6.93 16 19 C -0.07 -2.03 10.04 22.25 0.22 -1.81 16 20 C -0.20 -5.84 10.04 22.29 0.22 -5.61 16 21 C -0.08 -2.88 10.04 22.25 0.22 -2.65 16 22 C -0.22 -9.38 9.16 22.40 0.21 -9.17 16 23 H 0.07 1.71 8.14 -2.38 -0.02 1.70 16 24 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.04 1.54 5.99 -2.39 -0.01 1.53 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.05 2.07 6.58 -2.39 -0.02 2.06 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.04 1.42 6.51 -2.38 -0.02 1.40 16 33 H 0.01 0.75 6.15 -2.39 -0.01 0.73 16 34 H 0.00 -0.08 6.45 -2.39 -0.02 -0.10 16 35 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.13 3.68 5.74 -2.91 -0.02 3.67 16 37 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 38 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.12 3.78 8.06 -2.91 -0.02 3.75 16 40 H 0.09 4.57 6.26 -2.91 -0.02 4.55 16 Total: -1.00 -61.37 313.99 6.12 -55.25 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 1.00 Total: 19.56 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 4.14 Total: -40.04 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -1.05 Total: -81.27 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -61.37 6.12 -55.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233333665.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.455 kcal (2) G-P(sol) polarization free energy of solvation -61.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds