Wall clock time and date at job start Mon Mar 30 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46922 * 2 1 4 4 C 1.53004 * 109.47188 * 119.99954 * 2 1 3 5 5 C 1.52997 * 109.46958 * 300.00300 * 4 2 1 6 6 C 1.52995 * 109.47085 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.47301 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 90.00016 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97953 * 7 6 5 13 13 N 1.46496 * 109.47032 * 239.99716 * 2 1 3 14 14 C 1.36942 * 120.00212 * 60.00561 * 13 2 1 15 15 H 1.08002 * 119.99493 * 359.97438 * 14 13 2 16 16 C 1.38805 * 120.00306 * 179.97438 * 14 13 2 17 17 N 1.31622 * 119.99946 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00125 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47038 * 89.99836 * 18 16 14 20 20 H 1.48494 * 109.47166 * 209.99973 * 18 16 14 21 21 H 1.48499 * 109.46758 * 330.00045 * 18 16 14 22 22 H 1.08992 * 109.46703 * 300.00034 * 1 2 3 23 23 H 1.08997 * 109.46778 * 60.00395 * 1 2 3 24 24 H 1.08996 * 109.46818 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46658 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47072 * 299.99425 * 3 2 1 27 27 H 1.08992 * 109.47002 * 60.00154 * 3 2 1 28 28 H 1.08992 * 109.47400 * 180.02562 * 4 2 1 29 29 H 1.08999 * 109.46626 * 59.99829 * 4 2 1 30 30 H 1.08995 * 109.47671 * 59.99728 * 5 4 2 31 31 H 1.09004 * 109.46984 * 299.99744 * 5 4 2 32 32 H 1.09005 * 109.47610 * 59.99944 * 6 5 4 33 33 H 1.09000 * 109.47256 * 299.99285 * 6 5 4 34 34 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 35 35 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 37 37 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 38 38 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 39 39 H 0.97003 * 120.00401 * 239.99787 * 13 2 1 40 40 H 0.97001 * 119.99890 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.5300 0.0000 2.4985 6 6 2.0395 -0.7216 3.7477 7 6 1.5376 -0.0108 4.9782 8 6 0.3295 -0.3754 5.5425 9 6 -0.1306 0.2762 6.6715 10 6 0.6177 1.2919 7.2365 11 6 1.8232 1.6601 6.6691 12 6 2.2855 1.0054 5.5428 13 7 2.0184 -0.6907 -1.1961 14 6 1.6877 -0.2228 -2.4399 15 1 1.0665 0.6551 -2.5390 16 6 2.1508 -0.8769 -3.5732 17 7 2.9082 -1.9465 -3.4524 18 14 1.6990 -0.2391 -5.2700 19 1 2.7219 0.7390 -5.7196 20 1 1.6444 -1.3733 -6.2268 21 1 0.3716 0.4241 -5.2121 22 1 -0.3632 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1301 1.4425 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1300 -0.7209 1.2495 29 1 1.6767 -1.7489 1.2492 30 1 0.4401 0.0000 2.4985 31 1 1.8934 1.0277 2.4985 32 1 3.1296 -0.7220 3.7480 33 1 1.6757 -1.7491 3.7475 34 1 -0.2549 -1.1693 5.1013 35 1 -1.0747 -0.0084 7.1121 36 1 0.2583 1.8007 8.1189 37 1 2.4058 2.4566 7.1080 38 1 3.2298 1.2897 5.1024 39 1 2.5761 -1.4793 -1.1071 40 1 3.2315 -2.4038 -4.2445 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238099288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:49 Heat of formation + Delta-G solvation = 10.827375 kcal Electronic energy + Delta-G solvation = -17482.934417 eV Core-core repulsion = 14875.838491 eV Total energy + Delta-G solvation = -2607.095926 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.39644 -37.47327 -34.29293 -32.37104 -30.96579 -30.18746 -28.37699 -26.39951 -26.02230 -23.98589 -22.64416 -22.01811 -20.71168 -18.17673 -17.04009 -16.77329 -15.50231 -15.27673 -14.93489 -14.32773 -13.90822 -13.67660 -13.48677 -13.08912 -12.93441 -12.92453 -12.48534 -11.80924 -11.79890 -11.64112 -11.22692 -11.13688 -10.91891 -10.91041 -10.81730 -10.41267 -10.35202 -10.25153 -10.08457 -9.62460 -9.41164 -9.00679 -8.82179 -8.70605 -6.87770 -5.69498 -2.96877 1.28977 1.31458 3.46834 3.52037 3.53477 3.70799 4.62444 4.75399 4.77125 4.90448 5.03433 5.20807 5.31396 5.44270 5.47840 5.49828 5.59866 5.77987 5.79282 5.90621 5.97066 6.00973 6.09611 6.14136 6.24253 6.30540 6.39536 6.41419 6.42793 6.56241 6.60350 6.68657 6.74854 6.78317 6.93412 6.96785 7.17301 7.30912 7.78567 8.49920 9.60640 10.20402 10.55287 11.53730 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.053702 B = 0.003728 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.275498 B = 7509.277372 C = 7539.538704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.195 3.805 3 C -0.152 4.152 4 C -0.114 4.114 5 C -0.110 4.110 6 C -0.085 4.085 7 C -0.072 4.072 8 C -0.119 4.119 9 C -0.120 4.120 10 C -0.132 4.132 11 C -0.120 4.120 12 C -0.119 4.119 13 N -0.722 5.722 14 C -0.226 4.226 15 H 0.070 0.930 16 C -0.018 4.018 17 N -0.936 5.936 18 Si 0.902 3.098 19 H -0.291 1.291 20 H -0.293 1.293 21 H -0.283 1.283 22 H 0.038 0.962 23 H 0.051 0.949 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.383 0.617 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 4.908 20.228 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.104 3.896 3 C -0.211 4.211 4 C -0.152 4.152 5 C -0.148 4.148 6 C -0.122 4.122 7 C -0.072 4.072 8 C -0.137 4.137 9 C -0.138 4.138 10 C -0.150 4.150 11 C -0.138 4.138 12 C -0.137 4.137 13 N -0.363 5.363 14 C -0.358 4.358 15 H 0.088 0.912 16 C -0.213 4.213 17 N -0.585 5.585 18 Si 0.734 3.266 19 H -0.219 1.219 20 H -0.219 1.219 21 H -0.209 1.209 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.217 0.783 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.568 4.982 20.065 20.980 hybrid contribution -0.063 0.111 -1.015 1.023 sum -3.631 5.093 19.049 20.050 Atomic orbital electron populations 1.22292 0.98136 1.00808 0.99859 1.19559 0.91988 0.91290 0.86791 1.22293 1.00654 0.98293 0.99860 1.21726 1.00541 0.99288 0.93649 1.21664 1.01037 0.99537 0.92582 1.20716 1.00941 0.98926 0.91608 1.20053 0.94582 0.96161 0.96407 1.21106 0.96032 1.00368 0.96219 1.21135 0.99695 0.96579 0.96393 1.21100 0.95466 0.98144 1.00307 1.21135 0.96468 0.99785 0.96409 1.21104 1.00107 0.96261 0.96252 1.42496 1.60776 1.32877 1.00145 1.19167 1.24870 1.08226 0.83506 0.91227 1.24707 1.00867 0.98106 0.97610 1.69662 1.39718 1.21030 1.28108 0.86247 0.77877 0.77583 0.84885 1.21879 1.21897 1.20871 0.94293 0.92963 0.93461 0.93460 0.92967 0.94288 0.92145 0.92142 0.91639 0.91634 0.91039 0.91033 0.86071 0.86323 0.86465 0.86321 0.86073 0.78349 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.09 37.16 0.30 -2.56 16 2 C 0.19 3.86 0.92 -131.81 -0.12 3.73 16 3 C -0.15 -2.86 8.09 37.16 0.30 -2.56 16 4 C -0.11 -1.88 4.38 -26.73 -0.12 -1.99 16 5 C -0.11 -1.48 4.49 -26.74 -0.12 -1.60 16 6 C -0.08 -0.98 5.34 -27.88 -0.15 -1.13 16 7 C -0.07 -0.82 5.13 -104.62 -0.54 -1.36 16 8 C -0.12 -1.29 9.70 -39.58 -0.38 -1.68 16 9 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 10 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 11 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 12 C -0.12 -1.29 9.70 -39.58 -0.38 -1.68 16 13 N -0.72 -18.14 5.14 -47.23 -0.24 -18.39 16 14 C -0.23 -6.28 8.67 -15.06 -0.13 -6.41 16 15 H 0.07 1.89 6.69 -52.49 -0.35 1.54 16 16 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 17 N -0.94 -28.57 13.06 55.49 0.72 -27.85 16 18 Si 0.90 22.71 29.55 -169.99 -5.02 17.68 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H 0.04 0.62 6.43 -51.93 -0.33 0.29 16 23 H 0.05 1.06 7.27 -51.93 -0.38 0.68 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16 26 H 0.05 1.06 7.27 -51.93 -0.38 0.68 16 27 H 0.04 0.62 6.43 -51.93 -0.33 0.29 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.89 6.43 -51.93 -0.33 0.55 16 31 H 0.07 0.89 6.43 -51.93 -0.33 0.55 16 32 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 33 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 34 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.38 10.27 7.67 -40.82 -0.31 9.96 16 40 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 321.19 15.07 4.84 4.84 Total: -1.00 -30.42 321.19 -8.87 -39.29 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.53 Total: 7.06 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -2.63 Total: -22.63 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.48 Total: -46.24 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.42 -8.87 -39.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238099288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.113 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds