Wall clock time and date at job start Mon Mar 30 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46922 * 2 1 4 4 C 1.53004 * 109.47188 * 119.99954 * 2 1 3 5 5 C 1.52997 * 109.46958 * 300.00300 * 4 2 1 6 6 C 1.52995 * 109.47085 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.47301 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 90.00016 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97953 * 7 6 5 13 13 N 1.46496 * 109.47032 * 239.99716 * 2 1 3 14 14 C 1.36942 * 120.00212 * 60.00561 * 13 2 1 15 15 H 1.08002 * 119.99493 * 359.97438 * 14 13 2 16 16 C 1.38805 * 120.00306 * 179.97438 * 14 13 2 17 17 N 1.31622 * 119.99946 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00125 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47038 * 89.99836 * 18 16 14 20 20 H 1.48494 * 109.47166 * 209.99973 * 18 16 14 21 21 H 1.48499 * 109.46758 * 330.00045 * 18 16 14 22 22 H 1.08992 * 109.46703 * 300.00034 * 1 2 3 23 23 H 1.08997 * 109.46778 * 60.00395 * 1 2 3 24 24 H 1.08996 * 109.46818 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46658 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47072 * 299.99425 * 3 2 1 27 27 H 1.08992 * 109.47002 * 60.00154 * 3 2 1 28 28 H 1.08992 * 109.47400 * 180.02562 * 4 2 1 29 29 H 1.08999 * 109.46626 * 59.99829 * 4 2 1 30 30 H 1.08995 * 109.47671 * 59.99728 * 5 4 2 31 31 H 1.09004 * 109.46984 * 299.99744 * 5 4 2 32 32 H 1.09005 * 109.47610 * 59.99944 * 6 5 4 33 33 H 1.09000 * 109.47256 * 299.99285 * 6 5 4 34 34 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 35 35 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 37 37 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 38 38 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 39 39 H 0.97003 * 120.00401 * 239.99787 * 13 2 1 40 40 H 0.97001 * 119.99890 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.5300 0.0000 2.4985 6 6 2.0395 -0.7216 3.7477 7 6 1.5376 -0.0108 4.9782 8 6 0.3295 -0.3754 5.5425 9 6 -0.1306 0.2762 6.6715 10 6 0.6177 1.2919 7.2365 11 6 1.8232 1.6601 6.6691 12 6 2.2855 1.0054 5.5428 13 7 2.0184 -0.6907 -1.1961 14 6 1.6877 -0.2228 -2.4399 15 1 1.0665 0.6551 -2.5390 16 6 2.1508 -0.8769 -3.5732 17 7 2.9082 -1.9465 -3.4524 18 14 1.6990 -0.2391 -5.2700 19 1 2.7219 0.7390 -5.7196 20 1 1.6444 -1.3733 -6.2268 21 1 0.3716 0.4241 -5.2121 22 1 -0.3632 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1301 1.4425 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1300 -0.7209 1.2495 29 1 1.6767 -1.7489 1.2492 30 1 0.4401 0.0000 2.4985 31 1 1.8934 1.0277 2.4985 32 1 3.1296 -0.7220 3.7480 33 1 1.6757 -1.7491 3.7475 34 1 -0.2549 -1.1693 5.1013 35 1 -1.0747 -0.0084 7.1121 36 1 0.2583 1.8007 8.1189 37 1 2.4058 2.4566 7.1080 38 1 3.2298 1.2897 5.1024 39 1 2.5761 -1.4793 -1.1071 40 1 3.2315 -2.4038 -4.2445 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238099288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:48 Heat of formation + Delta-G solvation = -4.826876 kcal Electronic energy + Delta-G solvation = -17483.613236 eV Core-core repulsion = 14875.838491 eV Total energy + Delta-G solvation = -2607.774745 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.19558 -38.98215 -35.62767 -34.08762 -31.69718 -31.59500 -30.00574 -27.95111 -27.27635 -25.81158 -23.38303 -23.25675 -21.61526 -19.76940 -19.07432 -17.57912 -16.78688 -16.42831 -16.04246 -15.70247 -15.41665 -15.31052 -14.37555 -14.34501 -14.16057 -14.14083 -13.78314 -13.27840 -13.05201 -12.88296 -12.78724 -12.73150 -12.43740 -12.29648 -12.05679 -11.94907 -11.84616 -11.79156 -11.36429 -11.32112 -11.09659 -10.84682 -9.75495 -9.50645 -8.95049 -7.89153 -5.15689 0.52467 0.56583 1.46693 1.47884 1.55928 2.58644 2.94558 3.44397 3.73914 3.99330 4.00909 4.10878 4.20091 4.24465 4.35953 4.45406 4.49002 4.66320 4.69673 4.72195 4.78104 4.89683 4.90025 4.97691 5.04230 5.16820 5.21148 5.22301 5.23959 5.28018 5.34602 5.46898 5.55417 5.65227 5.68859 5.70238 5.76032 5.84239 6.20527 6.34664 7.39634 8.18909 8.41113 9.35053 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.053702 B = 0.003728 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.275498 B = 7509.277372 C = 7539.538704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.182 3.818 3 C -0.144 4.144 4 C -0.105 4.105 5 C -0.098 4.098 6 C -0.078 4.078 7 C -0.088 4.088 8 C -0.133 4.133 9 C -0.127 4.127 10 C -0.136 4.136 11 C -0.127 4.127 12 C -0.133 4.133 13 N -0.735 5.735 14 C -0.218 4.218 15 H 0.073 0.927 16 C -0.082 4.082 17 N -0.973 5.973 18 Si 0.964 3.036 19 H -0.290 1.290 20 H -0.298 1.298 21 H -0.271 1.271 22 H 0.072 0.928 23 H 0.032 0.968 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.032 0.968 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.127 0.873 39 H 0.370 0.630 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.453 6.230 21.931 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.093 3.907 3 C -0.203 4.203 4 C -0.143 4.143 5 C -0.136 4.136 6 C -0.116 4.116 7 C -0.088 4.088 8 C -0.151 4.151 9 C -0.145 4.145 10 C -0.154 4.154 11 C -0.145 4.145 12 C -0.151 4.151 13 N -0.375 5.375 14 C -0.351 4.351 15 H 0.091 0.909 16 C -0.274 4.274 17 N -0.625 5.625 18 Si 0.795 3.205 19 H -0.217 1.217 20 H -0.224 1.224 21 H -0.196 1.196 22 H 0.091 0.909 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.156 0.844 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.145 0.855 39 H 0.202 0.798 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.545 6.343 21.803 23.158 hybrid contribution 0.205 -0.260 -1.414 1.452 sum -4.340 6.083 20.389 21.716 Atomic orbital electron populations 1.22193 0.97068 1.00489 1.00546 1.19938 0.92699 0.91836 0.86260 1.22195 1.00062 0.97490 1.00566 1.21624 1.00130 0.98991 0.93534 1.21537 1.01005 0.99325 0.91719 1.20609 1.01035 0.98870 0.91044 1.20065 0.95227 0.96831 0.96650 1.21302 0.96084 1.00872 0.96837 1.21437 1.00542 0.96453 0.96073 1.21451 0.95205 0.97898 1.00844 1.21437 0.96874 1.00104 0.96089 1.21301 1.00502 0.96423 0.96870 1.42764 1.60696 1.32825 1.01175 1.19482 1.23356 1.07539 0.84687 0.90906 1.25470 1.01868 0.98866 1.01168 1.69816 1.41605 1.22599 1.28517 0.85255 0.77979 0.76743 0.80572 1.21696 1.22449 1.19611 0.90918 0.94873 0.94302 0.94312 0.94840 0.90915 0.92721 0.92714 0.91378 0.91375 0.90848 0.90840 0.85486 0.84416 0.84224 0.84416 0.85490 0.79814 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.24 8.09 71.98 0.58 -4.66 16 2 C 0.18 7.06 0.92 3.61 0.00 7.07 16 3 C -0.14 -5.24 8.09 71.98 0.58 -4.66 16 4 C -0.10 -3.35 4.38 30.59 0.13 -3.22 16 5 C -0.10 -2.43 4.49 30.59 0.14 -2.29 16 6 C -0.08 -1.70 5.34 29.85 0.16 -1.54 16 7 C -0.09 -1.85 5.13 -19.86 -0.10 -1.96 16 8 C -0.13 -2.63 9.70 22.27 0.22 -2.42 16 9 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 10 C -0.14 -2.21 10.05 22.27 0.22 -1.99 16 11 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 12 C -0.13 -2.63 9.70 22.27 0.22 -2.42 16 13 N -0.73 -37.28 5.14 -303.33 -1.56 -38.84 16 14 C -0.22 -12.19 8.67 84.03 0.73 -11.46 16 15 H 0.07 3.95 6.69 -2.91 -0.02 3.93 16 16 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 17 N -0.97 -60.65 13.06 21.65 0.28 -60.36 16 18 Si 0.96 47.13 29.55 68.60 2.03 49.15 16 19 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 20 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 22 H 0.07 2.13 6.43 -2.39 -0.02 2.12 16 23 H 0.03 1.30 7.27 -2.39 -0.02 1.29 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.03 1.31 7.27 -2.39 -0.02 1.30 16 27 H 0.07 2.13 6.43 -2.39 -0.02 2.12 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.66 6.43 -2.39 -0.02 1.65 16 31 H 0.07 1.66 6.43 -2.38 -0.02 1.65 16 32 H 0.07 1.55 8.09 -2.38 -0.02 1.53 16 33 H 0.07 1.55 8.09 -2.39 -0.02 1.53 16 34 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 36 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 37 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.37 20.32 7.67 -92.71 -0.71 19.61 16 40 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -64.90 321.19 4.84 -60.07 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.29 Total: 27.80 kcal Atomic # 6 Polarization: -41.61 SS G_CDS: 3.80 Total: -37.81 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -1.28 Total: -99.20 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.15 kcal Total: -64.90 4.84 -60.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238099288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.240 kcal (2) G-P(sol) polarization free energy of solvation -64.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds