Wall clock time and date at job start Mon Mar 30 2020 06:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47289 * 2 1 4 4 C 1.53004 * 109.47221 * 120.00253 * 2 1 3 5 5 H 1.09003 * 109.47055 * 185.86945 * 4 2 1 6 6 C 1.50698 * 109.46900 * 305.87080 * 4 2 1 7 7 H 1.07996 * 120.00132 * 65.44668 * 6 4 2 8 8 C 1.37880 * 120.00001 * 245.72399 * 6 4 2 9 9 N 1.31515 * 120.00266 * 173.24484 * 8 6 4 10 10 Si 1.86809 * 119.99780 * 353.24480 * 8 6 4 11 11 H 1.48500 * 109.47002 * 92.42750 * 10 8 6 12 12 H 1.48497 * 109.47155 * 212.43095 * 10 8 6 13 13 H 1.48501 * 109.46921 * 332.43071 * 10 8 6 14 14 N 1.46902 * 109.47153 * 65.86852 * 4 2 1 15 15 C 1.46904 * 110.99463 * 85.00121 * 14 4 2 16 16 H 1.08998 * 109.47289 * 324.99632 * 15 14 4 17 17 C 1.52995 * 109.47246 * 84.99915 * 15 14 4 18 18 C 1.50703 * 109.46581 * 204.99892 * 15 14 4 19 19 C 1.38233 * 120.00072 * 319.72333 * 18 15 14 20 20 C 1.38236 * 120.00055 * 179.81099 * 19 18 15 21 21 C 1.38233 * 120.00046 * 0.40081 * 20 19 18 22 22 C 1.38239 * 119.99946 * 359.85837 * 21 20 19 23 23 C 1.38232 * 119.99961 * 359.95303 * 22 21 20 24 24 H 1.09001 * 109.46832 * 300.00029 * 1 2 3 25 25 H 1.08994 * 109.47271 * 59.99955 * 1 2 3 26 26 H 1.09003 * 109.46791 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 239.99971 * 2 1 3 28 28 H 1.09001 * 109.47127 * 64.33847 * 3 2 1 29 29 H 1.09001 * 109.47124 * 184.34134 * 3 2 1 30 30 H 1.09005 * 109.47139 * 304.34326 * 3 2 1 31 31 H 0.96994 * 119.99503 * 179.97438 * 9 8 6 32 32 H 1.00898 * 110.99922 * 321.04883 * 14 4 2 33 33 H 1.08997 * 109.47247 * 300.00102 * 17 15 14 34 34 H 1.09012 * 109.47208 * 59.99762 * 17 15 14 35 35 H 1.09003 * 109.47436 * 179.97438 * 17 15 14 36 36 H 1.08002 * 120.00070 * 0.02562 * 19 18 15 37 37 H 1.08002 * 120.00292 * 180.23136 * 20 19 18 38 38 H 1.07992 * 120.00288 * 179.82962 * 21 20 19 39 39 H 1.08001 * 120.00124 * 179.97438 * 22 21 20 40 40 H 1.07994 * 120.00432 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1250 -0.6312 1.3033 6 6 1.4226 -0.0998 2.4754 7 1 0.3577 -0.1727 2.6397 8 6 2.2164 0.5668 3.3845 9 7 1.6651 1.2219 4.3828 10 14 4.0750 0.5395 3.1983 11 1 4.5105 1.7182 2.4069 12 1 4.7077 0.5834 4.5410 13 1 4.4840 -0.7049 2.4988 14 7 1.6695 -2.1412 1.1805 15 6 2.6593 -2.9068 0.4111 16 1 3.0451 -2.2898 -0.4004 17 6 3.8110 -3.3196 1.3298 18 6 2.0069 -4.1389 -0.1611 19 6 1.1042 -4.8591 0.5986 20 6 0.5027 -5.9871 0.0723 21 6 0.8103 -6.3995 -1.2107 22 6 1.7171 -5.6823 -1.9685 23 6 2.3155 -4.5522 -1.4437 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.7416 1.9333 0.9263 29 1 3.1273 1.4434 -0.0778 30 1 1.6146 1.9783 -0.8485 31 1 2.2237 1.6905 5.0225 32 1 0.7444 -2.2551 0.7941 33 1 4.2829 -2.4284 1.7437 34 1 3.4252 -3.9367 2.1414 35 1 4.5453 -3.8881 0.7590 36 1 0.8661 -4.5387 1.6022 37 1 -0.2054 -6.5477 0.6646 38 1 0.3425 -7.2822 -1.6209 39 1 1.9577 -6.0047 -2.9708 40 1 3.0236 -3.9916 -2.0358 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238207619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:17 Heat of formation + Delta-G solvation = 12.977455 kcal Electronic energy + Delta-G solvation = -18489.695872 eV Core-core repulsion = 15882.693181 eV Total energy + Delta-G solvation = -2607.002691 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.32062 -37.21161 -34.18224 -32.07030 -30.76997 -30.28345 -28.50842 -26.70333 -26.03352 -23.21037 -22.61586 -21.85816 -20.04684 -18.48798 -17.30290 -16.42069 -15.26249 -15.16161 -14.39440 -14.14164 -13.80968 -13.64415 -13.44758 -13.14715 -12.88235 -12.53413 -12.35525 -11.99544 -11.75371 -11.47112 -11.33126 -11.16956 -10.87975 -10.80756 -10.61588 -10.56563 -10.27017 -10.06966 -9.68709 -9.44422 -8.89969 -8.73934 -8.56969 -8.43254 -7.26717 -6.02818 -3.99262 1.53352 1.58789 3.29926 3.37801 3.39748 3.97759 4.45093 4.86672 5.02483 5.12135 5.14383 5.32740 5.45537 5.69555 5.72295 5.82538 5.86212 5.90985 5.93003 6.00457 6.15608 6.21972 6.31074 6.42450 6.43905 6.54501 6.57367 6.62855 6.68876 6.74547 6.78291 6.87249 6.94727 7.03310 7.16622 7.20010 7.28630 7.78925 8.07424 8.46336 8.69121 9.04068 9.61128 11.10138 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026496 B = 0.006837 C = 0.006407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.521380 B = 4094.110075 C = 4368.893055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C -0.135 4.135 4 C 0.178 3.822 5 H 0.047 0.953 6 C -0.475 4.475 7 H 0.076 0.924 8 C 0.075 3.925 9 N -0.901 5.901 10 Si 0.866 3.134 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.257 1.257 14 N -0.669 5.669 15 C 0.115 3.885 16 H 0.039 0.961 17 C -0.137 4.137 18 C -0.075 4.075 19 C -0.099 4.099 20 C -0.124 4.124 21 C -0.131 4.131 22 C -0.126 4.126 23 C -0.120 4.120 24 H 0.074 0.926 25 H 0.030 0.970 26 H 0.039 0.961 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.035 0.965 30 H 0.034 0.966 31 H 0.262 0.738 32 H 0.328 0.672 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.043 0.957 36 H 0.135 0.865 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.008 -10.445 -10.901 15.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.137 4.137 3 C -0.193 4.193 4 C 0.070 3.930 5 H 0.065 0.935 6 C -0.514 4.514 7 H 0.094 0.906 8 C -0.127 4.127 9 N -0.539 5.539 10 Si 0.695 3.305 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.182 1.182 14 N -0.300 5.300 15 C 0.005 3.995 16 H 0.057 0.943 17 C -0.195 4.195 18 C -0.076 4.076 19 C -0.117 4.117 20 C -0.142 4.142 21 C -0.149 4.149 22 C -0.144 4.144 23 C -0.139 4.139 24 H 0.093 0.907 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.148 0.852 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.153 0.847 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.333 -10.482 -10.111 14.625 hybrid contribution 0.859 0.305 -0.992 1.347 sum 2.192 -10.177 -11.102 15.220 Atomic orbital electron populations 1.21714 0.95976 1.00190 1.01162 1.21778 0.96140 0.96928 0.98828 1.21705 0.98986 0.96793 1.01825 1.19954 0.96402 0.83178 0.93420 0.93535 1.20753 0.95929 1.30766 1.03923 0.90616 1.24999 0.97808 0.94922 0.94974 1.69897 1.35326 1.33431 1.15294 0.87079 0.87368 0.78790 0.77298 1.20628 1.21792 1.18236 1.61421 1.03459 1.11959 1.53187 1.20500 0.93958 0.90819 0.94198 0.94277 1.21878 0.96617 1.01680 0.99332 1.20217 0.96663 0.96999 0.93688 1.21206 0.95692 0.94158 1.00639 1.21177 1.00116 0.97229 0.95677 1.21068 0.98919 0.99999 0.94959 1.21033 0.97845 0.95927 0.99572 1.21057 1.00280 0.97131 0.95405 0.90748 0.95077 0.94228 0.94898 0.90598 0.94605 0.94738 0.92826 0.85238 0.91781 0.92097 0.93831 0.84748 0.86366 0.86706 0.86640 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.64 37.16 0.32 -2.20 16 2 C -0.12 -2.31 2.76 -90.62 -0.25 -2.56 16 3 C -0.14 -2.69 9.08 37.16 0.34 -2.35 16 4 C 0.18 3.96 1.59 -68.86 -0.11 3.85 16 5 H 0.05 1.09 3.56 -51.93 -0.18 0.90 16 6 C -0.47 -12.52 7.12 -34.44 -0.25 -12.77 16 7 H 0.08 2.19 7.15 -52.49 -0.38 1.82 16 8 C 0.07 2.07 5.39 -17.82 -0.10 1.97 16 9 N -0.90 -26.79 13.96 55.43 0.77 -26.01 16 10 Si 0.87 21.07 27.31 -169.99 -4.64 16.43 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.26 -5.95 4.46 56.52 0.25 -5.70 16 14 N -0.67 -13.44 5.43 -102.16 -0.56 -13.99 16 15 C 0.12 2.02 2.61 -68.86 -0.18 1.84 16 16 H 0.04 0.70 6.96 -51.93 -0.36 0.34 16 17 C -0.14 -2.40 9.37 37.16 0.35 -2.05 16 18 C -0.08 -1.17 4.71 -104.62 -0.49 -1.66 16 19 C -0.10 -1.48 9.01 -39.58 -0.36 -1.83 16 20 C -0.12 -1.60 10.05 -39.58 -0.40 -1.99 16 21 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 22 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 23 C -0.12 -1.66 9.67 -39.58 -0.38 -2.04 16 24 H 0.07 1.57 6.58 -51.93 -0.34 1.23 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.71 6.47 -51.93 -0.34 0.37 16 27 H 0.03 0.62 7.37 -51.93 -0.38 0.24 16 28 H 0.08 1.70 7.21 -51.93 -0.37 1.33 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.33 6.37 5.88 -39.29 -0.23 6.14 16 33 H 0.06 1.25 5.62 -51.93 -0.29 0.96 16 34 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.13 2.12 7.73 -52.49 -0.41 1.71 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.12 1.45 8.04 -52.49 -0.42 1.03 16 LS Contribution 311.22 15.07 4.69 4.69 Total: -1.00 -28.23 311.22 -8.41 -36.64 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.37 Total: 7.92 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: -2.30 Total: -25.68 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.22 Total: -40.00 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.64 Total: 16.43 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.23 -8.41 -36.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238207619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.617 kcal (2) G-P(sol) polarization free energy of solvation -28.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds