Wall clock time and date at job start Mon Mar 30 2020 06:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47012 * 2 1 4 4 C 1.53002 * 109.46902 * 120.00151 * 2 1 3 5 5 H 1.09001 * 109.47162 * 54.50665 * 4 2 1 6 6 C 1.50703 * 109.46911 * 174.50795 * 4 2 1 7 7 H 1.07996 * 119.99586 * 116.16688 * 6 4 2 8 8 C 1.37867 * 119.99993 * 296.16720 * 6 4 2 9 9 N 1.31516 * 120.00581 * 352.35975 * 8 6 4 10 10 Si 1.86804 * 119.99907 * 172.35619 * 8 6 4 11 11 H 1.48496 * 109.47075 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47030 * 119.99950 * 10 8 6 13 13 H 1.48501 * 109.47305 * 239.99889 * 10 8 6 14 14 N 1.46900 * 109.47072 * 294.50656 * 4 2 1 15 15 C 1.46898 * 110.99849 * 153.87931 * 14 4 2 16 16 H 1.09000 * 109.47241 * 31.84729 * 15 14 4 17 17 C 1.53003 * 109.47583 * 271.84748 * 15 14 4 18 18 C 1.50709 * 109.47109 * 151.84848 * 15 14 4 19 19 C 1.38238 * 119.99559 * 39.72584 * 18 15 14 20 20 C 1.38235 * 119.99383 * 179.80870 * 19 18 15 21 21 C 1.38232 * 120.00100 * 0.40105 * 20 19 18 22 22 C 1.38235 * 120.00029 * 359.85652 * 21 20 19 23 23 C 1.38228 * 119.99906 * 220.00357 * 18 15 14 24 24 H 1.08999 * 109.46882 * 305.77296 * 1 2 3 25 25 H 1.09002 * 109.46927 * 65.77622 * 1 2 3 26 26 H 1.09004 * 109.47045 * 185.77602 * 1 2 3 27 27 H 1.08998 * 109.46922 * 239.99707 * 2 1 3 28 28 H 1.09001 * 109.46792 * 184.01046 * 3 2 1 29 29 H 1.08998 * 109.46762 * 304.01225 * 3 2 1 30 30 H 1.08999 * 109.46646 * 64.01464 * 3 2 1 31 31 H 0.96992 * 120.00347 * 179.97438 * 9 8 6 32 32 H 1.00907 * 110.99768 * 29.93259 * 14 4 2 33 33 H 1.09004 * 109.47035 * 296.45168 * 17 15 14 34 34 H 1.09000 * 109.46765 * 56.43989 * 17 15 14 35 35 H 1.08996 * 109.47480 * 176.44615 * 17 15 14 36 36 H 1.07995 * 120.00382 * 359.97438 * 19 18 15 37 37 H 1.08001 * 119.99829 * 180.22732 * 20 19 18 38 38 H 1.08003 * 119.99754 * 179.82779 * 21 20 19 39 39 H 1.08000 * 119.99717 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.00241 * 359.97249 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.5986 -1.7166 1.2998 6 6 3.5409 -0.8402 1.1831 7 1 4.1550 -0.3404 1.9177 8 6 4.1300 -1.5868 0.1850 9 7 3.3855 -2.3159 -0.6174 10 14 5.9857 -1.5628 -0.0278 11 1 6.5897 -0.6710 0.9945 12 1 6.5208 -2.9382 0.1375 13 1 6.3220 -1.0606 -1.3843 14 7 1.6616 0.0435 2.4450 15 6 1.5555 -0.8333 3.6189 16 1 2.2697 -1.6515 3.5270 17 6 0.1374 -1.4014 3.7047 18 6 1.8558 -0.0419 4.8658 19 6 1.3877 1.2527 4.9922 20 6 1.6598 1.9771 6.1376 21 6 2.4070 1.4101 7.1529 22 6 2.8797 0.1174 7.0241 23 6 2.6042 -0.6085 5.8805 24 1 -0.3633 0.6007 0.8338 25 1 -0.3633 0.4217 -0.9372 26 1 -0.3633 -1.0225 0.1034 27 1 1.8934 -0.5139 -0.8899 28 1 3.1277 1.4433 -0.0719 29 1 1.6192 1.9766 -0.8519 30 1 1.7366 1.9351 0.9238 31 1 3.8000 -2.8408 -1.3198 32 1 0.8022 0.5501 2.2932 33 1 -0.5712 -0.5878 3.8598 34 1 -0.1028 -1.9203 2.7767 35 1 0.0760 -2.1007 4.5385 36 1 0.8071 1.6970 4.1974 37 1 1.2910 2.9872 6.2380 38 1 2.6220 1.9771 8.0466 39 1 3.4638 -0.3255 7.8173 40 1 2.9734 -1.6184 5.7799 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238207640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:20 Heat of formation + Delta-G solvation = 9.666834 kcal Electronic energy + Delta-G solvation = -18454.250978 eV Core-core repulsion = 15847.104727 eV Total energy + Delta-G solvation = -2607.146251 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.07963 -37.01686 -34.08891 -32.04277 -30.56435 -30.04713 -28.26458 -26.35859 -25.76394 -23.32709 -22.44828 -21.84202 -19.89350 -18.64026 -16.57141 -16.00048 -15.08802 -15.03461 -14.43268 -14.25488 -13.61998 -13.29109 -13.01318 -12.90452 -12.78753 -12.51000 -12.36843 -11.85445 -11.71831 -11.46309 -11.20404 -10.97784 -10.91570 -10.73840 -10.50836 -10.33130 -10.15057 -9.86192 -9.69166 -9.33459 -8.96969 -8.54393 -8.34620 -8.25588 -7.18843 -5.95991 -3.95575 1.76579 1.79187 3.32669 3.41413 3.47405 4.17933 4.48216 5.09605 5.24243 5.29905 5.34350 5.41489 5.52470 5.74165 5.83467 5.89901 5.94556 6.06861 6.09969 6.18333 6.22193 6.35119 6.38977 6.48630 6.53705 6.60327 6.68426 6.83091 6.84207 6.87285 6.92692 7.14096 7.28101 7.38182 7.41190 7.58224 7.71855 7.95732 8.29829 8.37265 8.78957 9.13046 9.67958 11.11361 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.007450 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.401311 B = 3757.488679 C = 4447.070663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.122 4.122 4 C 0.224 3.776 5 H 0.008 0.992 6 C -0.487 4.487 7 H 0.061 0.939 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.886 3.114 11 H -0.273 1.273 12 H -0.288 1.288 13 H -0.285 1.285 14 N -0.674 5.674 15 C 0.122 3.878 16 H 0.090 0.910 17 C -0.172 4.172 18 C -0.046 4.046 19 C -0.098 4.098 20 C -0.127 4.127 21 C -0.137 4.137 22 C -0.125 4.125 23 C -0.119 4.119 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.043 0.957 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.020 0.980 30 H 0.045 0.955 31 H 0.258 0.742 32 H 0.317 0.683 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.408 4.714 9.683 12.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.179 4.179 4 C 0.117 3.883 5 H 0.026 0.974 6 C -0.525 4.525 7 H 0.080 0.920 8 C -0.143 4.143 9 N -0.536 5.536 10 Si 0.714 3.286 11 H -0.198 1.198 12 H -0.214 1.214 13 H -0.212 1.212 14 N -0.305 5.305 15 C 0.011 3.989 16 H 0.109 0.891 17 C -0.231 4.231 18 C -0.047 4.047 19 C -0.116 4.116 20 C -0.145 4.145 21 C -0.155 4.155 22 C -0.143 4.143 23 C -0.137 4.137 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.135 0.865 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.736 4.782 9.644 11.760 hybrid contribution 0.258 -0.519 -0.457 0.738 sum -4.477 4.263 9.187 11.073 Atomic orbital electron populations 1.21938 0.98902 1.00040 0.99454 1.21297 0.91325 0.96129 1.02770 1.21571 1.01579 0.96246 0.98520 1.19170 0.95492 0.90257 0.83407 0.97388 1.21182 0.91135 1.28716 1.11515 0.92044 1.24923 0.97686 0.95276 0.96430 1.69951 1.34812 1.28959 1.19828 0.86624 0.86403 0.77566 0.77960 1.19750 1.21397 1.21150 1.60794 1.36362 1.28690 1.04632 1.20427 0.95386 0.94307 0.88763 0.89149 1.22466 0.97915 1.00879 1.01806 1.20071 0.95239 0.94550 0.94843 1.20919 0.99889 0.94097 0.96716 1.21076 0.99578 0.99496 0.94331 1.20984 0.99808 0.95709 0.99004 1.21015 1.00537 0.94887 0.97844 1.21049 0.98855 1.00073 0.93765 0.94362 0.94357 0.93808 0.89207 0.92419 0.96105 0.93595 0.93244 0.86506 0.93165 0.92208 0.92955 0.86319 0.86834 0.86992 0.86800 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.92 37.16 0.33 -2.38 16 2 C -0.10 -2.12 2.56 -90.61 -0.23 -2.35 16 3 C -0.12 -2.51 8.78 37.16 0.33 -2.18 16 4 C 0.22 5.28 1.40 -68.86 -0.10 5.18 16 5 H 0.01 0.22 7.33 -51.93 -0.38 -0.16 16 6 C -0.49 -13.00 7.59 -34.44 -0.26 -13.26 16 7 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 8 C 0.06 1.56 5.18 -17.82 -0.09 1.47 16 9 N -0.90 -25.21 11.96 55.43 0.66 -24.55 16 10 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 N -0.67 -13.51 4.60 -102.16 -0.47 -13.98 16 15 C 0.12 2.24 2.58 -68.86 -0.18 2.06 16 16 H 0.09 1.89 7.51 -51.93 -0.39 1.50 16 17 C -0.17 -2.73 9.13 37.16 0.34 -2.39 16 18 C -0.05 -0.78 4.96 -104.62 -0.52 -1.30 16 19 C -0.10 -1.53 9.33 -39.58 -0.37 -1.90 16 20 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 21 C -0.14 -1.82 10.05 -39.58 -0.40 -2.22 16 22 C -0.12 -1.74 10.05 -39.58 -0.40 -2.13 16 23 C -0.12 -1.87 9.67 -39.59 -0.38 -2.26 16 24 H 0.04 0.64 6.65 -51.93 -0.35 0.29 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 2.30 6.58 -51.93 -0.34 1.96 16 28 H 0.06 1.30 7.53 -51.93 -0.39 0.91 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.89 6.99 -51.93 -0.36 0.53 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.32 5.83 5.27 -39.29 -0.21 5.62 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 1.01 7.66 -51.93 -0.40 0.61 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.12 1.79 7.34 -52.49 -0.39 1.40 16 37 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 39 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.12 1.74 8.04 -52.49 -0.42 1.32 16 LS Contribution 319.58 15.07 4.82 4.82 Total: -1.00 -27.76 319.58 -8.89 -36.65 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.55 Total: 6.46 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -2.33 Total: -25.84 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.19 Total: -38.53 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.76 -8.89 -36.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238207640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.319 kcal (2) G-P(sol) polarization free energy of solvation -27.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds