Wall clock time and date at job start Mon Mar 30 2020 06:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47012 * 2 1 4 4 C 1.53002 * 109.46902 * 120.00151 * 2 1 3 5 5 H 1.09001 * 109.47162 * 54.50665 * 4 2 1 6 6 C 1.50703 * 109.46911 * 174.50795 * 4 2 1 7 7 H 1.07996 * 119.99586 * 116.16688 * 6 4 2 8 8 C 1.37867 * 119.99993 * 296.16720 * 6 4 2 9 9 N 1.31516 * 120.00581 * 352.35975 * 8 6 4 10 10 Si 1.86804 * 119.99907 * 172.35619 * 8 6 4 11 11 H 1.48496 * 109.47075 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47030 * 119.99950 * 10 8 6 13 13 H 1.48501 * 109.47305 * 239.99889 * 10 8 6 14 14 N 1.46900 * 109.47072 * 294.50656 * 4 2 1 15 15 C 1.46898 * 110.99849 * 153.87931 * 14 4 2 16 16 H 1.09000 * 109.47241 * 31.84729 * 15 14 4 17 17 C 1.53003 * 109.47583 * 271.84748 * 15 14 4 18 18 C 1.50709 * 109.47109 * 151.84848 * 15 14 4 19 19 C 1.38238 * 119.99559 * 39.72584 * 18 15 14 20 20 C 1.38235 * 119.99383 * 179.80870 * 19 18 15 21 21 C 1.38232 * 120.00100 * 0.40105 * 20 19 18 22 22 C 1.38235 * 120.00029 * 359.85652 * 21 20 19 23 23 C 1.38228 * 119.99906 * 220.00357 * 18 15 14 24 24 H 1.08999 * 109.46882 * 305.77296 * 1 2 3 25 25 H 1.09002 * 109.46927 * 65.77622 * 1 2 3 26 26 H 1.09004 * 109.47045 * 185.77602 * 1 2 3 27 27 H 1.08998 * 109.46922 * 239.99707 * 2 1 3 28 28 H 1.09001 * 109.46792 * 184.01046 * 3 2 1 29 29 H 1.08998 * 109.46762 * 304.01225 * 3 2 1 30 30 H 1.08999 * 109.46646 * 64.01464 * 3 2 1 31 31 H 0.96992 * 120.00347 * 179.97438 * 9 8 6 32 32 H 1.00907 * 110.99768 * 29.93259 * 14 4 2 33 33 H 1.09004 * 109.47035 * 296.45168 * 17 15 14 34 34 H 1.09000 * 109.46765 * 56.43989 * 17 15 14 35 35 H 1.08996 * 109.47480 * 176.44615 * 17 15 14 36 36 H 1.07995 * 120.00382 * 359.97438 * 19 18 15 37 37 H 1.08001 * 119.99829 * 180.22732 * 20 19 18 38 38 H 1.08003 * 119.99754 * 179.82779 * 21 20 19 39 39 H 1.08000 * 119.99717 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.00241 * 359.97249 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.5986 -1.7166 1.2998 6 6 3.5409 -0.8402 1.1831 7 1 4.1550 -0.3404 1.9177 8 6 4.1300 -1.5868 0.1850 9 7 3.3855 -2.3159 -0.6174 10 14 5.9857 -1.5628 -0.0278 11 1 6.5897 -0.6710 0.9945 12 1 6.5208 -2.9382 0.1375 13 1 6.3220 -1.0606 -1.3843 14 7 1.6616 0.0435 2.4450 15 6 1.5555 -0.8333 3.6189 16 1 2.2697 -1.6515 3.5270 17 6 0.1374 -1.4014 3.7047 18 6 1.8558 -0.0419 4.8658 19 6 1.3877 1.2527 4.9922 20 6 1.6598 1.9771 6.1376 21 6 2.4070 1.4101 7.1529 22 6 2.8797 0.1174 7.0241 23 6 2.6042 -0.6085 5.8805 24 1 -0.3633 0.6007 0.8338 25 1 -0.3633 0.4217 -0.9372 26 1 -0.3633 -1.0225 0.1034 27 1 1.8934 -0.5139 -0.8899 28 1 3.1277 1.4433 -0.0719 29 1 1.6192 1.9766 -0.8519 30 1 1.7366 1.9351 0.9238 31 1 3.8000 -2.8408 -1.3198 32 1 0.8022 0.5501 2.2932 33 1 -0.5712 -0.5878 3.8598 34 1 -0.1028 -1.9203 2.7767 35 1 0.0760 -2.1007 4.5385 36 1 0.8071 1.6970 4.1974 37 1 1.2910 2.9872 6.2380 38 1 2.6220 1.9771 8.0466 39 1 3.4638 -0.3255 7.8173 40 1 2.9734 -1.6184 5.7799 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238207640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:20 Heat of formation + Delta-G solvation = -4.325521 kcal Electronic energy + Delta-G solvation = -18454.857732 eV Core-core repulsion = 15847.104727 eV Total energy + Delta-G solvation = -2607.753005 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.32591 -38.63014 -35.61538 -34.07108 -31.72240 -31.41122 -29.69298 -28.11092 -27.53593 -24.80883 -23.96398 -23.13639 -21.22259 -20.44783 -18.08476 -17.72097 -16.82350 -16.39528 -16.02084 -15.62295 -15.17633 -14.86745 -14.38736 -14.30370 -14.12338 -14.07103 -13.94150 -13.34674 -13.02535 -12.93860 -12.86927 -12.79144 -12.61709 -12.26978 -12.06677 -11.94087 -11.67910 -11.58583 -11.45446 -11.04941 -10.87515 -10.40848 -9.67154 -9.44743 -8.90129 -8.05736 -6.11699 0.61951 0.66022 1.36675 1.40335 1.51212 2.44714 3.02678 3.21865 3.67000 4.04979 4.15737 4.27075 4.38780 4.42352 4.46096 4.48142 4.51164 4.54548 4.72437 4.80081 4.92437 4.95849 5.04093 5.10681 5.13634 5.15087 5.25649 5.28243 5.34780 5.48738 5.56615 5.72233 5.74457 5.80086 5.83963 5.87088 5.97270 6.27510 6.40031 6.56670 7.02225 7.08260 7.55434 8.99504 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.007450 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.401311 B = 3757.488679 C = 4447.070663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 C -0.112 4.112 4 C 0.235 3.765 5 H -0.029 1.029 6 C -0.494 4.494 7 H 0.043 0.957 8 C 0.014 3.986 9 N -0.921 5.921 10 Si 0.940 3.060 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.280 1.280 14 N -0.671 5.671 15 C 0.125 3.875 16 H 0.052 0.948 17 C -0.161 4.161 18 C -0.068 4.068 19 C -0.111 4.111 20 C -0.127 4.127 21 C -0.134 4.134 22 C -0.126 4.126 23 C -0.139 4.139 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.033 0.967 27 H 0.051 0.949 28 H 0.029 0.971 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.258 0.742 32 H 0.328 0.672 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.122 0.878 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.930 6.602 11.214 14.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 C -0.169 4.169 4 C 0.126 3.874 5 H -0.011 1.011 6 C -0.533 4.533 7 H 0.061 0.939 8 C -0.184 4.184 9 N -0.561 5.561 10 Si 0.767 3.233 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.206 1.206 14 N -0.302 5.302 15 C 0.014 3.986 16 H 0.070 0.930 17 C -0.220 4.220 18 C -0.069 4.069 19 C -0.129 4.129 20 C -0.145 4.145 21 C -0.152 4.152 22 C -0.144 4.144 23 C -0.158 4.158 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.148 0.852 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.140 0.860 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.265 6.677 11.188 14.053 hybrid contribution 0.431 -1.097 -0.839 1.447 sum -4.834 5.580 10.349 12.713 Atomic orbital electron populations 1.21809 0.95881 1.00172 1.01452 1.21162 0.93950 0.96421 1.00060 1.21459 0.99785 0.95438 1.00252 1.18872 0.93584 0.89204 0.85691 1.01106 1.21364 0.92872 1.28181 1.10867 0.93893 1.25536 1.01248 0.95202 0.96400 1.70055 1.36140 1.29638 1.20304 0.85776 0.82189 0.77465 0.77848 1.19802 1.21079 1.20617 1.60676 1.37181 1.28613 1.03753 1.20312 0.95869 0.93397 0.89002 0.92965 1.22340 0.96667 1.01525 1.01484 1.19965 0.97110 0.95380 0.94428 1.21033 1.00372 0.93652 0.97825 1.21422 0.98970 1.00540 0.93534 1.21408 0.98464 0.95459 0.99849 1.21331 1.00269 0.95242 0.97567 1.21189 0.99425 1.00479 0.94685 0.92040 0.92489 0.94758 0.93053 0.95159 0.93711 0.92259 0.93309 0.85237 0.91249 0.93784 0.91697 0.86036 0.84085 0.83780 0.84377 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 8.92 71.99 0.64 -4.25 16 2 C -0.10 -4.30 2.56 -10.79 -0.03 -4.33 16 3 C -0.11 -4.53 8.78 71.98 0.63 -3.90 16 4 C 0.23 11.43 1.40 44.17 0.06 11.49 16 5 H -0.03 -1.59 7.33 -2.39 -0.02 -1.60 16 6 C -0.49 -27.35 7.59 25.60 0.19 -27.16 16 7 H 0.04 2.49 7.83 -2.91 -0.02 2.47 16 8 C 0.01 0.79 5.18 84.65 0.44 1.23 16 9 N -0.92 -53.54 11.96 21.44 0.26 -53.29 16 10 Si 0.94 45.03 29.54 68.60 2.03 47.06 16 11 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 14 N -0.67 -27.16 4.60 -477.13 -2.20 -29.36 16 15 C 0.12 4.69 2.58 44.17 0.11 4.80 16 16 H 0.05 2.33 7.51 -2.39 -0.02 2.31 16 17 C -0.16 -5.13 9.13 71.98 0.66 -4.47 16 18 C -0.07 -2.28 4.96 -19.86 -0.10 -2.38 16 19 C -0.11 -3.27 9.33 22.27 0.21 -3.07 16 20 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 21 C -0.13 -3.10 10.05 22.27 0.22 -2.88 16 22 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 23 C -0.14 -4.34 9.67 22.27 0.22 -4.12 16 24 H 0.06 1.91 6.65 -2.39 -0.02 1.90 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.05 2.70 6.58 -2.39 -0.02 2.69 16 28 H 0.03 1.35 7.53 -2.39 -0.02 1.34 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 2.21 6.99 -2.39 -0.02 2.19 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.33 11.78 5.27 -89.69 -0.47 11.30 16 33 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.04 1.51 7.66 -2.39 -0.02 1.50 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.12 3.43 7.34 -2.91 -0.02 3.41 16 37 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 39 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 40 H 0.11 3.48 8.04 -2.91 -0.02 3.46 16 Total: -1.00 -61.59 319.58 4.32 -57.27 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.52 Total: 23.27 kcal Atomic # 6 Polarization: -48.66 SS G_CDS: 3.71 Total: -44.95 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -1.94 Total: -82.65 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -61.59 4.32 -57.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238207640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.941 kcal (2) G-P(sol) polarization free energy of solvation -61.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds