Wall clock time and date at job start Mon Mar 30 2020 06:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47161 * 2 1 4 4 C 1.53003 * 109.47215 * 119.99866 * 2 1 3 5 5 H 1.08991 * 109.47136 * 184.48858 * 4 2 1 6 6 C 1.50700 * 109.46934 * 64.48751 * 4 2 1 7 7 H 1.07997 * 120.00536 * 245.48938 * 6 4 2 8 8 C 1.37884 * 119.99719 * 65.21921 * 6 4 2 9 9 N 1.31507 * 120.00170 * 8.01828 * 8 6 4 10 10 Si 1.86801 * 119.99903 * 188.01862 * 8 6 4 11 11 H 1.48497 * 109.47062 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47085 * 119.99640 * 10 8 6 13 13 H 1.48497 * 109.47410 * 240.00176 * 10 8 6 14 14 N 1.46900 * 109.46975 * 304.49146 * 4 2 1 15 15 C 1.46899 * 110.99872 * 206.30928 * 14 4 2 16 16 H 1.09005 * 109.47210 * 327.03983 * 15 14 4 17 17 C 1.52998 * 109.47175 * 87.04023 * 15 14 4 18 18 C 1.50699 * 109.47335 * 207.03889 * 15 14 4 19 19 C 1.38230 * 119.99922 * 319.73150 * 18 15 14 20 20 C 1.38241 * 120.00058 * 179.78826 * 19 18 15 21 21 C 1.38238 * 119.99871 * 0.43452 * 20 19 18 22 22 C 1.38238 * 119.99674 * 359.81932 * 21 20 19 23 23 C 1.38230 * 120.00363 * 359.97070 * 22 21 20 24 24 H 1.09003 * 109.47353 * 304.64275 * 1 2 3 25 25 H 1.08997 * 109.47264 * 64.64294 * 1 2 3 26 26 H 1.09005 * 109.47328 * 184.64508 * 1 2 3 27 27 H 1.08998 * 109.46873 * 239.99308 * 2 1 3 28 28 H 1.09007 * 109.47316 * 182.80415 * 3 2 1 29 29 H 1.09008 * 109.47146 * 302.80135 * 3 2 1 30 30 H 1.08997 * 109.47582 * 62.79771 * 3 2 1 31 31 H 0.97000 * 120.00118 * 179.97438 * 9 8 6 32 32 H 1.00899 * 111.00083 * 330.26661 * 14 4 2 33 33 H 1.08997 * 109.47630 * 184.73693 * 17 15 14 34 34 H 1.09003 * 109.46972 * 304.73526 * 17 15 14 35 35 H 1.08997 * 109.47364 * 64.73140 * 17 15 14 36 36 H 1.07998 * 120.00275 * 359.97438 * 19 18 15 37 37 H 1.08001 * 120.00229 * 180.27524 * 20 19 18 38 38 H 1.07999 * 120.00154 * 179.83259 * 21 20 19 39 39 H 1.07997 * 119.99670 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00410 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1270 -0.6521 1.2904 6 6 1.6305 -2.1705 1.1949 7 1 0.9341 -2.5625 1.9214 8 6 2.1406 -2.9947 0.2143 9 7 3.1001 -2.5625 -0.5744 10 14 1.4688 -4.7252 0.0060 11 1 0.4015 -4.9660 1.0101 12 1 0.9059 -4.8766 -1.3598 13 1 2.5642 -5.7085 0.2019 14 7 1.4638 -0.0941 2.4462 15 6 2.3348 -0.2880 3.6132 16 1 2.8413 -1.2499 3.5327 17 6 3.3746 0.8331 3.6653 18 6 1.5039 -0.2614 4.8701 19 6 0.4723 0.6498 4.9975 20 6 -0.2927 0.6713 6.1488 21 6 -0.0202 -0.2123 7.1763 22 6 1.0149 -1.1200 7.0510 23 6 1.7771 -1.1444 5.8981 24 1 -0.3634 0.5842 0.8455 25 1 -0.3633 0.4401 -0.9286 26 1 -0.3634 -1.0243 0.0832 27 1 1.8933 -0.5139 -0.8899 28 1 3.1289 1.4429 -0.0503 29 1 1.6362 1.9706 -0.8639 30 1 1.7182 1.9416 0.9140 31 1 3.4592 -3.1425 -1.2640 32 1 1.2824 0.8859 2.2892 33 1 4.0723 0.6440 4.4811 34 1 3.9194 0.8675 2.7219 35 1 2.8729 1.7866 3.8301 36 1 0.2619 1.3428 4.1964 37 1 -1.1016 1.3802 6.2465 38 1 -0.6160 -0.1937 8.0769 39 1 1.2281 -1.8101 7.8540 40 1 2.5855 -1.8538 5.8000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238226348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:23 Heat of formation + Delta-G solvation = 9.564165 kcal Electronic energy + Delta-G solvation = -18451.163456 eV Core-core repulsion = 15844.012753 eV Total energy + Delta-G solvation = -2607.150703 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.08455 -37.02493 -34.08545 -32.05289 -30.56711 -30.04727 -28.25206 -26.40280 -25.73197 -23.33122 -22.45407 -21.84863 -19.89459 -18.64024 -16.58011 -15.99512 -15.09453 -15.03606 -14.43240 -14.26839 -13.61769 -13.29284 -13.01685 -12.90799 -12.78743 -12.50543 -12.37713 -11.85316 -11.72680 -11.45367 -11.24301 -10.97634 -10.91131 -10.73544 -10.51254 -10.31967 -10.15406 -9.86620 -9.67150 -9.34818 -8.96668 -8.54776 -8.35188 -8.26085 -7.18776 -5.96260 -3.95639 1.76283 1.78739 3.32621 3.41384 3.47316 4.17587 4.48087 5.09640 5.23984 5.29614 5.34109 5.40995 5.52308 5.74527 5.83787 5.89980 5.94022 6.06289 6.09244 6.18405 6.22109 6.34838 6.38731 6.48615 6.52655 6.60459 6.68046 6.82764 6.83683 6.86948 6.91001 7.13898 7.26714 7.38577 7.42290 7.58771 7.69801 7.95616 8.29686 8.36743 8.79297 9.13257 9.67789 11.11203 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.007413 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.457708 B = 3776.315620 C = 4456.350206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.095 4.095 3 C -0.146 4.146 4 C 0.223 3.777 5 H 0.010 0.990 6 C -0.487 4.487 7 H 0.061 0.939 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.287 1.287 14 N -0.674 5.674 15 C 0.122 3.878 16 H 0.091 0.909 17 C -0.172 4.172 18 C -0.046 4.046 19 C -0.099 4.099 20 C -0.126 4.126 21 C -0.137 4.137 22 C -0.124 4.124 23 C -0.119 4.119 24 H 0.040 0.960 25 H 0.020 0.980 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.258 0.742 32 H 0.317 0.683 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 6.829 9.600 12.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.114 4.114 3 C -0.204 4.204 4 C 0.116 3.884 5 H 0.028 0.972 6 C -0.526 4.526 7 H 0.080 0.920 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.714 3.286 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.214 1.214 14 N -0.305 5.305 15 C 0.011 3.989 16 H 0.109 0.891 17 C -0.231 4.231 18 C -0.047 4.047 19 C -0.117 4.117 20 C -0.144 4.144 21 C -0.155 4.155 22 C -0.143 4.143 23 C -0.137 4.137 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.135 0.865 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.810 6.223 9.571 11.757 hybrid contribution 0.393 -0.410 -0.466 0.735 sum -2.417 5.813 9.105 11.069 Atomic orbital electron populations 1.21578 0.96598 1.01849 0.97894 1.21288 0.94848 0.92678 1.02620 1.21944 1.00213 0.98788 0.99456 1.19166 0.92844 0.93027 0.83358 0.97231 1.21175 1.25379 0.93406 1.12612 0.92027 1.24931 0.94870 0.98082 0.96413 1.69955 1.25946 1.36660 1.20953 0.86626 0.79021 0.84977 0.77948 1.19738 1.21153 1.21388 1.60789 1.47216 1.17539 1.04986 1.20423 0.90673 0.99036 0.88723 0.89106 1.22472 0.99777 0.99006 1.01870 1.20068 0.95693 0.94070 0.94835 1.20917 0.95146 0.98876 0.96769 1.21076 0.99728 0.99411 0.94221 1.20986 0.98547 0.97089 0.98898 1.21017 0.96393 0.99049 0.97796 1.21052 1.00098 0.99010 0.93589 0.94104 0.96072 0.91941 0.89447 0.93799 0.94325 0.94296 0.93240 0.86488 0.92962 0.92162 0.93200 0.86361 0.86829 0.86984 0.86793 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 8.77 37.16 0.33 -2.19 16 2 C -0.09 -2.10 2.57 -90.62 -0.23 -2.33 16 3 C -0.15 -2.72 9.07 37.15 0.34 -2.38 16 4 C 0.22 5.26 1.39 -68.86 -0.10 5.17 16 5 H 0.01 0.26 7.21 -51.93 -0.37 -0.11 16 6 C -0.49 -12.99 7.39 -34.44 -0.25 -13.25 16 7 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 8 C 0.06 1.57 5.19 -17.82 -0.09 1.48 16 9 N -0.90 -25.21 12.07 55.43 0.67 -24.54 16 10 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 N -0.67 -13.54 4.78 -102.17 -0.49 -14.03 16 15 C 0.12 2.25 2.58 -68.87 -0.18 2.07 16 16 H 0.09 1.90 7.53 -51.93 -0.39 1.51 16 17 C -0.17 -2.75 9.13 37.16 0.34 -2.41 16 18 C -0.05 -0.78 4.95 -104.62 -0.52 -1.29 16 19 C -0.10 -1.55 9.32 -39.58 -0.37 -1.91 16 20 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 21 C -0.14 -1.82 10.05 -39.58 -0.40 -2.22 16 22 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 23 C -0.12 -1.87 9.67 -39.58 -0.38 -2.26 16 24 H 0.04 0.78 7.32 -51.93 -0.38 0.40 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 1.42 7.22 -51.93 -0.37 1.04 16 27 H 0.09 2.23 6.73 -51.93 -0.35 1.88 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.04 0.65 6.32 -51.93 -0.33 0.32 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.32 5.84 5.10 -39.29 -0.20 5.64 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.03 7.56 -51.93 -0.39 0.63 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.12 1.78 7.32 -52.49 -0.38 1.40 16 37 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.74 8.04 -52.49 -0.42 1.32 16 LS Contribution 319.27 15.07 4.81 4.81 Total: -1.00 -27.75 319.27 -8.87 -36.62 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.53 Total: 6.53 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -2.31 Total: -25.81 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.18 Total: -38.57 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.75 -8.87 -36.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238226348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.180 kcal (2) G-P(sol) polarization free energy of solvation -27.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds