Wall clock time and date at job start Mon Mar 30 2020 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47161 * 2 1 4 4 C 1.53003 * 109.47215 * 119.99866 * 2 1 3 5 5 H 1.08991 * 109.47136 * 184.48858 * 4 2 1 6 6 C 1.50700 * 109.46934 * 64.48751 * 4 2 1 7 7 H 1.07997 * 120.00536 * 245.48938 * 6 4 2 8 8 C 1.37884 * 119.99719 * 65.21921 * 6 4 2 9 9 N 1.31507 * 120.00170 * 8.01828 * 8 6 4 10 10 Si 1.86801 * 119.99903 * 188.01862 * 8 6 4 11 11 H 1.48497 * 109.47062 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47085 * 119.99640 * 10 8 6 13 13 H 1.48497 * 109.47410 * 240.00176 * 10 8 6 14 14 N 1.46900 * 109.46975 * 304.49146 * 4 2 1 15 15 C 1.46899 * 110.99872 * 206.30928 * 14 4 2 16 16 H 1.09005 * 109.47210 * 327.03983 * 15 14 4 17 17 C 1.52998 * 109.47175 * 87.04023 * 15 14 4 18 18 C 1.50699 * 109.47335 * 207.03889 * 15 14 4 19 19 C 1.38230 * 119.99922 * 319.73150 * 18 15 14 20 20 C 1.38241 * 120.00058 * 179.78826 * 19 18 15 21 21 C 1.38238 * 119.99871 * 0.43452 * 20 19 18 22 22 C 1.38238 * 119.99674 * 359.81932 * 21 20 19 23 23 C 1.38230 * 120.00363 * 359.97070 * 22 21 20 24 24 H 1.09003 * 109.47353 * 304.64275 * 1 2 3 25 25 H 1.08997 * 109.47264 * 64.64294 * 1 2 3 26 26 H 1.09005 * 109.47328 * 184.64508 * 1 2 3 27 27 H 1.08998 * 109.46873 * 239.99308 * 2 1 3 28 28 H 1.09007 * 109.47316 * 182.80415 * 3 2 1 29 29 H 1.09008 * 109.47146 * 302.80135 * 3 2 1 30 30 H 1.08997 * 109.47582 * 62.79771 * 3 2 1 31 31 H 0.97000 * 120.00118 * 179.97438 * 9 8 6 32 32 H 1.00899 * 111.00083 * 330.26661 * 14 4 2 33 33 H 1.08997 * 109.47630 * 184.73693 * 17 15 14 34 34 H 1.09003 * 109.46972 * 304.73526 * 17 15 14 35 35 H 1.08997 * 109.47364 * 64.73140 * 17 15 14 36 36 H 1.07998 * 120.00275 * 359.97438 * 19 18 15 37 37 H 1.08001 * 120.00229 * 180.27524 * 20 19 18 38 38 H 1.07999 * 120.00154 * 179.83259 * 21 20 19 39 39 H 1.07997 * 119.99670 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00410 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1270 -0.6521 1.2904 6 6 1.6305 -2.1705 1.1949 7 1 0.9341 -2.5625 1.9214 8 6 2.1406 -2.9947 0.2143 9 7 3.1001 -2.5625 -0.5744 10 14 1.4688 -4.7252 0.0060 11 1 0.4015 -4.9660 1.0101 12 1 0.9059 -4.8766 -1.3598 13 1 2.5642 -5.7085 0.2019 14 7 1.4638 -0.0941 2.4462 15 6 2.3348 -0.2880 3.6132 16 1 2.8413 -1.2499 3.5327 17 6 3.3746 0.8331 3.6653 18 6 1.5039 -0.2614 4.8701 19 6 0.4723 0.6498 4.9975 20 6 -0.2927 0.6713 6.1488 21 6 -0.0202 -0.2123 7.1763 22 6 1.0149 -1.1200 7.0510 23 6 1.7771 -1.1444 5.8981 24 1 -0.3634 0.5842 0.8455 25 1 -0.3633 0.4401 -0.9286 26 1 -0.3634 -1.0243 0.0832 27 1 1.8933 -0.5139 -0.8899 28 1 3.1289 1.4429 -0.0503 29 1 1.6362 1.9706 -0.8639 30 1 1.7182 1.9416 0.9140 31 1 3.4592 -3.1425 -1.2640 32 1 1.2824 0.8859 2.2892 33 1 4.0723 0.6440 4.4811 34 1 3.9194 0.8675 2.7219 35 1 2.8729 1.7866 3.8301 36 1 0.2619 1.3428 4.1964 37 1 -1.1016 1.3802 6.2465 38 1 -0.6160 -0.1937 8.0769 39 1 1.2281 -1.8101 7.8540 40 1 2.5855 -1.8538 5.8000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238226348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:22 Heat of formation + Delta-G solvation = -4.504012 kcal Electronic energy + Delta-G solvation = -18451.773498 eV Core-core repulsion = 15844.012753 eV Total energy + Delta-G solvation = -2607.760745 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33102 -38.63690 -35.61162 -34.08083 -31.72244 -31.41097 -29.68506 -28.15291 -27.50287 -24.81812 -23.96787 -23.13966 -21.22412 -20.44831 -18.08286 -17.72613 -16.82170 -16.40374 -16.02034 -15.62883 -15.17430 -14.86938 -14.38992 -14.31289 -14.11949 -14.07144 -13.95120 -13.36174 -13.02177 -12.93051 -12.87255 -12.80706 -12.61319 -12.27141 -12.05796 -11.93984 -11.67915 -11.59550 -11.44303 -11.05485 -10.86947 -10.41475 -9.67313 -9.45181 -8.90243 -8.05830 -6.11580 0.61835 0.65774 1.36806 1.40501 1.51361 2.44776 3.02501 3.21865 3.66852 4.04559 4.15361 4.27054 4.38863 4.42038 4.45494 4.47570 4.51249 4.54509 4.72249 4.79777 4.90652 4.95790 5.04371 5.10077 5.13677 5.15175 5.25661 5.26817 5.34625 5.49446 5.55566 5.72077 5.74240 5.80417 5.84410 5.85935 5.96482 6.27306 6.39435 6.56410 7.02502 7.08639 7.55421 8.99543 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.007413 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.457708 B = 3776.315620 C = 4456.350206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.136 4.136 4 C 0.234 3.766 5 H -0.027 1.027 6 C -0.493 4.493 7 H 0.043 0.957 8 C 0.014 3.986 9 N -0.921 5.921 10 Si 0.940 3.060 11 H -0.273 1.273 12 H -0.280 1.280 13 H -0.285 1.285 14 N -0.671 5.671 15 C 0.125 3.875 16 H 0.052 0.948 17 C -0.162 4.162 18 C -0.068 4.068 19 C -0.111 4.111 20 C -0.126 4.126 21 C -0.134 4.134 22 C -0.126 4.126 23 C -0.139 4.139 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.033 0.967 27 H 0.049 0.951 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.258 0.742 32 H 0.328 0.672 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.112 8.004 11.141 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.115 4.115 3 C -0.194 4.194 4 C 0.126 3.874 5 H -0.010 1.010 6 C -0.532 4.532 7 H 0.061 0.939 8 C -0.184 4.184 9 N -0.562 5.562 10 Si 0.767 3.233 11 H -0.198 1.198 12 H -0.206 1.206 13 H -0.211 1.211 14 N -0.303 5.303 15 C 0.015 3.985 16 H 0.071 0.929 17 C -0.221 4.221 18 C -0.069 4.069 19 C -0.129 4.129 20 C -0.144 4.144 21 C -0.152 4.152 22 C -0.144 4.144 23 C -0.158 4.158 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.148 0.852 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.139 0.861 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.409 7.406 11.125 14.073 hybrid contribution 0.875 -0.779 -0.850 1.447 sum -3.534 6.627 10.275 12.727 Atomic orbital electron populations 1.21462 0.95181 1.00577 0.99727 1.21153 0.95986 0.94449 0.99902 1.21816 0.99625 0.96465 1.01478 1.18869 0.90673 0.92248 0.85639 1.00956 1.21356 1.24606 0.95332 1.11951 0.93857 1.25544 0.95174 1.01280 0.96388 1.70059 1.26910 1.37732 1.21474 0.85775 0.78359 0.81300 0.77848 1.19762 1.20628 1.21081 1.60672 1.47398 1.18133 1.04092 1.20306 0.91231 0.97989 0.89019 0.92933 1.22346 0.99316 0.98957 1.01459 1.19958 0.96738 0.95809 0.94360 1.21030 0.95173 0.98857 0.97887 1.21423 0.99792 0.99775 0.93434 1.21411 0.98066 0.95917 0.99786 1.21332 0.95995 0.99507 0.97538 1.21191 1.00909 0.99177 0.94496 0.92427 0.93954 0.94739 0.93285 0.94719 0.92226 0.92216 0.93308 0.85224 0.91723 0.93800 0.91261 0.86066 0.84073 0.83766 0.84363 0.86817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.53 8.77 71.98 0.63 -3.90 16 2 C -0.10 -4.25 2.57 -10.80 -0.03 -4.28 16 3 C -0.14 -4.90 9.07 71.98 0.65 -4.25 16 4 C 0.23 11.39 1.39 44.17 0.06 11.45 16 5 H -0.03 -1.51 7.21 -2.39 -0.02 -1.52 16 6 C -0.49 -27.31 7.39 25.60 0.19 -27.12 16 7 H 0.04 2.51 7.83 -2.91 -0.02 2.48 16 8 C 0.01 0.79 5.19 84.66 0.44 1.23 16 9 N -0.92 -53.61 12.07 21.45 0.26 -53.35 16 10 Si 0.94 44.99 29.54 68.60 2.03 47.02 16 11 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 14 N -0.67 -27.23 4.78 -477.16 -2.28 -29.52 16 15 C 0.13 4.71 2.58 44.17 0.11 4.83 16 16 H 0.05 2.35 7.53 -2.38 -0.02 2.33 16 17 C -0.16 -5.18 9.13 71.98 0.66 -4.52 16 18 C -0.07 -2.28 4.95 -19.87 -0.10 -2.37 16 19 C -0.11 -3.29 9.32 22.27 0.21 -3.08 16 20 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 21 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 22 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 23 C -0.14 -4.33 9.67 22.27 0.22 -4.11 16 24 H 0.06 2.10 7.32 -2.39 -0.02 2.08 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.03 1.56 7.22 -2.38 -0.02 1.54 16 27 H 0.05 2.57 6.73 -2.39 -0.02 2.56 16 28 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.06 1.88 6.32 -2.39 -0.02 1.86 16 31 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.33 11.79 5.10 -89.69 -0.46 11.34 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.04 1.52 7.56 -2.39 -0.02 1.50 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.12 3.41 7.32 -2.91 -0.02 3.39 16 37 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 38 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 39 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.11 3.48 8.04 -2.91 -0.02 3.46 16 Total: -1.00 -61.59 319.27 4.25 -57.33 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.54 Total: 23.38 kcal Atomic # 6 Polarization: -48.58 SS G_CDS: 3.71 Total: -44.86 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -2.02 Total: -82.87 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -61.59 4.25 -57.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238226348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.827 kcal (2) G-P(sol) polarization free energy of solvation -61.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds