Wall clock time and date at job start Mon Mar 30 2020 06:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47036 * 2 1 4 4 C 1.53008 * 109.47267 * 120.00108 * 2 1 3 5 5 H 1.09000 * 109.46627 * 55.08917 * 4 2 1 6 6 C 1.50700 * 109.46652 * 295.09293 * 4 2 1 7 7 H 1.07995 * 120.00461 * 295.62872 * 6 4 2 8 8 C 1.37879 * 119.99964 * 115.63538 * 6 4 2 9 9 N 1.31510 * 120.00467 * 181.84983 * 8 6 4 10 10 Si 1.86810 * 119.99897 * 1.85113 * 8 6 4 11 11 H 1.48502 * 109.47052 * 275.40041 * 10 8 6 12 12 H 1.48500 * 109.46994 * 35.39721 * 10 8 6 13 13 H 1.48491 * 109.47066 * 155.39959 * 10 8 6 14 14 N 1.46895 * 109.47028 * 175.09240 * 4 2 1 15 15 C 1.46899 * 111.00356 * 276.39813 * 14 4 2 16 16 H 1.09001 * 109.46862 * 33.09014 * 15 14 4 17 17 C 1.53008 * 109.46950 * 273.09589 * 15 14 4 18 18 C 1.50692 * 109.47381 * 153.09860 * 15 14 4 19 19 C 1.38226 * 120.00486 * 39.72327 * 18 15 14 20 20 C 1.38229 * 120.00412 * 179.79222 * 19 18 15 21 21 C 1.38236 * 120.00115 * 0.43976 * 20 19 18 22 22 C 1.38237 * 119.99784 * 359.81478 * 21 20 19 23 23 C 1.38240 * 119.99533 * 220.00031 * 18 15 14 24 24 H 1.09003 * 109.47566 * 305.39942 * 1 2 3 25 25 H 1.08999 * 109.47429 * 65.39958 * 1 2 3 26 26 H 1.09006 * 109.47445 * 185.40237 * 1 2 3 27 27 H 1.09005 * 109.47201 * 240.00062 * 2 1 3 28 28 H 1.09000 * 109.46918 * 184.22905 * 3 2 1 29 29 H 1.09000 * 109.47291 * 304.22785 * 3 2 1 30 30 H 1.09004 * 109.47257 * 64.23089 * 3 2 1 31 31 H 0.96995 * 120.00543 * 179.97438 * 9 8 6 32 32 H 1.00900 * 110.99939 * 152.44381 * 14 4 2 33 33 H 1.09004 * 109.46719 * 59.99808 * 17 15 14 34 34 H 1.08993 * 109.47264 * 179.97438 * 17 15 14 35 35 H 1.08994 * 109.47105 * 300.00079 * 17 15 14 36 36 H 1.08008 * 119.99884 * 0.02562 * 19 18 15 37 37 H 1.08006 * 120.00521 * 180.27570 * 20 19 18 38 38 H 1.07997 * 120.00737 * 179.83981 * 21 20 19 39 39 H 1.08000 * 120.00412 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.00607 * 359.97438 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6066 -1.7204 1.2943 6 6 1.6393 0.0559 2.4767 7 1 2.0347 1.0473 2.6410 8 6 0.7681 -0.4990 3.3900 9 7 0.3899 0.1930 4.4424 10 14 0.1248 -2.2338 3.1325 11 1 -1.0551 -2.1956 2.2315 12 1 1.1882 -3.0702 2.5202 13 1 -0.2701 -2.8146 4.4408 14 7 3.5042 -0.8247 1.1915 15 6 3.9189 -1.9845 0.3910 16 1 3.1999 -2.1477 -0.4118 17 6 3.9769 -3.2259 1.2837 18 6 5.2811 -1.7263 -0.1993 19 6 6.2513 -1.0911 0.5529 20 6 7.5023 -0.8581 0.0129 21 6 7.7802 -1.2522 -1.2826 22 6 6.8083 -1.8828 -2.0368 23 6 5.5587 -2.1197 -1.4952 24 1 -0.3634 0.5953 0.8377 25 1 -0.3634 0.4278 -0.9344 26 1 -0.3634 -1.0231 0.0968 27 1 1.8933 -0.5138 -0.8900 28 1 3.1273 1.4434 -0.0758 29 1 1.6161 1.9777 -0.8497 30 1 1.7398 1.9340 0.9255 31 1 -0.2233 -0.1971 5.0847 32 1 3.9007 -0.8647 2.1184 33 1 2.9915 -3.4126 1.7107 34 1 4.2841 -4.0865 0.6897 35 1 4.6958 -3.0627 2.0865 36 1 6.0332 -0.7801 1.5640 37 1 8.2618 -0.3657 0.6022 38 1 8.7567 -1.0679 -1.7055 39 1 7.0255 -2.1912 -3.0488 40 1 4.7994 -2.6124 -2.0844 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238226365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:26 Heat of formation + Delta-G solvation = 9.003977 kcal Electronic energy + Delta-G solvation = -18485.200634 eV Core-core repulsion = 15878.025639 eV Total energy + Delta-G solvation = -2607.174994 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.19499 -37.05486 -34.24745 -32.16068 -30.72327 -30.34861 -28.44392 -26.33002 -25.93571 -23.22103 -22.70061 -21.90947 -20.15185 -18.28273 -17.21661 -16.41521 -15.28399 -14.84714 -14.53620 -13.95332 -13.77916 -13.68497 -13.24381 -13.08719 -12.84419 -12.69848 -12.41649 -12.16893 -11.90458 -11.40500 -11.19278 -11.11087 -10.83192 -10.79396 -10.61182 -10.48439 -10.14005 -9.86369 -9.71441 -9.65086 -8.79066 -8.65422 -8.64886 -8.37757 -7.32712 -6.13453 -4.14034 1.64907 1.69005 3.20742 3.27856 3.31075 4.07159 4.33652 4.88988 5.13615 5.16501 5.22734 5.38497 5.42492 5.61140 5.70721 5.79777 5.85049 5.99618 6.02804 6.13559 6.20246 6.28589 6.32366 6.36044 6.50115 6.55780 6.64960 6.72709 6.74621 6.79664 6.97854 7.02408 7.06221 7.23238 7.28581 7.30357 7.43943 7.66956 8.06611 8.43624 8.67168 8.97998 9.50984 10.99016 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.026618 B = 0.006826 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.684154 B = 4100.840804 C = 4357.452678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 C -0.123 4.123 4 C 0.181 3.819 5 H 0.011 0.989 6 C -0.502 4.502 7 H 0.083 0.917 8 C 0.076 3.924 9 N -0.895 5.895 10 Si 0.869 3.131 11 H -0.274 1.274 12 H -0.265 1.265 13 H -0.292 1.292 14 N -0.675 5.675 15 C 0.114 3.886 16 H 0.076 0.924 17 C -0.178 4.178 18 C -0.050 4.050 19 C -0.095 4.095 20 C -0.124 4.124 21 C -0.135 4.135 22 C -0.125 4.125 23 C -0.123 4.123 24 H 0.068 0.932 25 H 0.033 0.967 26 H 0.035 0.965 27 H 0.033 0.967 28 H 0.050 0.950 29 H 0.020 0.980 30 H 0.065 0.935 31 H 0.264 0.736 32 H 0.340 0.660 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.327 -4.991 -9.667 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.091 4.091 3 C -0.180 4.180 4 C 0.074 3.926 5 H 0.029 0.971 6 C -0.541 4.541 7 H 0.101 0.899 8 C -0.127 4.127 9 N -0.533 5.533 10 Si 0.698 3.302 11 H -0.200 1.200 12 H -0.191 1.191 13 H -0.219 1.219 14 N -0.307 5.307 15 C 0.003 3.997 16 H 0.094 0.906 17 C -0.237 4.237 18 C -0.051 4.051 19 C -0.114 4.114 20 C -0.142 4.142 21 C -0.153 4.153 22 C -0.143 4.143 23 C -0.141 4.141 24 H 0.087 0.913 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.160 0.840 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.248 -4.536 -10.000 14.356 hybrid contribution -0.674 -1.718 0.516 1.916 sum 8.575 -6.254 -9.484 14.233 Atomic orbital electron populations 1.21758 0.96684 1.00513 1.00559 1.20982 0.94023 0.96948 0.97138 1.21589 1.00323 0.95889 1.00241 1.19733 0.83783 0.94430 0.94659 0.97146 1.21011 1.26462 1.03394 1.03219 0.89932 1.25084 0.95877 0.96894 0.94835 1.69882 1.33961 1.37265 1.12228 0.87056 0.79786 0.86182 0.77216 1.19997 1.19098 1.21881 1.60939 1.12659 1.38087 1.18994 1.20511 0.92347 0.90320 0.96531 0.90607 1.22562 1.02489 0.98451 1.00157 1.20028 0.95599 0.95980 0.93515 1.20998 0.92362 0.97548 1.00450 1.21122 0.97024 1.00479 0.95606 1.21014 0.99022 1.00421 0.94879 1.21006 0.93780 1.00110 0.99428 1.21001 0.96819 1.01088 0.95227 0.91252 0.94773 0.94625 0.94817 0.93042 0.96041 0.91621 0.92635 0.84038 0.91887 0.93131 0.92507 0.85827 0.86614 0.86879 0.86788 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.91 37.16 0.33 -2.45 16 2 C -0.07 -1.47 2.79 -90.62 -0.25 -1.72 16 3 C -0.12 -2.48 8.78 37.15 0.33 -2.15 16 4 C 0.18 4.00 1.57 -68.86 -0.11 3.89 16 5 H 0.01 0.25 3.69 -51.93 -0.19 0.06 16 6 C -0.50 -12.99 6.96 -34.44 -0.24 -13.22 16 7 H 0.08 2.37 7.01 -52.49 -0.37 2.00 16 8 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 9 N -0.90 -26.13 13.96 55.43 0.77 -25.35 16 10 Si 0.87 20.74 27.17 -169.99 -4.62 16.12 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.03 5.01 56.52 0.28 -5.75 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 N -0.68 -13.28 4.99 -102.17 -0.51 -13.79 16 15 C 0.11 1.95 2.57 -68.86 -0.18 1.77 16 16 H 0.08 1.33 6.86 -51.93 -0.36 0.98 16 17 C -0.18 -2.90 9.13 37.16 0.34 -2.56 16 18 C -0.05 -0.79 4.96 -104.63 -0.52 -1.31 16 19 C -0.10 -1.44 9.32 -39.59 -0.37 -1.81 16 20 C -0.12 -1.65 10.05 -39.59 -0.40 -2.05 16 21 C -0.14 -1.68 10.05 -39.58 -0.40 -2.08 16 22 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 23 C -0.12 -1.74 9.67 -39.58 -0.38 -2.12 16 24 H 0.07 1.55 7.56 -51.93 -0.39 1.15 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.03 0.66 7.30 -51.93 -0.38 0.28 16 28 H 0.05 1.04 7.87 -51.93 -0.41 0.63 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 1.46 6.35 -51.93 -0.33 1.13 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.34 6.88 7.52 -39.29 -0.30 6.58 16 33 H 0.06 1.15 6.08 -51.93 -0.32 0.84 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 36 H 0.12 1.88 7.30 -52.48 -0.38 1.50 16 37 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 38 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.11 1.46 8.04 -52.49 -0.42 1.04 16 LS Contribution 314.37 15.07 4.74 4.74 Total: -1.00 -27.54 314.37 -8.44 -35.97 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.48 Total: 8.15 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -2.34 Total: -25.84 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.26 Total: -39.14 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.62 Total: 16.12 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.54 -8.44 -35.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238226365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.975 kcal (2) G-P(sol) polarization free energy of solvation -27.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds