Wall clock time and date at job start Mon Mar 30 2020 06:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52974 * 109.44470 * 54.85945 * 3 2 1 5 5 C 1.53014 * 109.40692 * 300.23525 * 4 3 2 6 6 H 1.08997 * 109.45502 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.46380 * 60.08005 * 5 4 3 8 8 C 1.52990 * 109.53542 * 300.05980 * 5 4 3 9 9 C 1.53034 * 109.52034 * 59.86392 * 8 5 4 10 10 H 1.08995 * 109.48200 * 60.04500 * 9 8 5 11 11 C 1.50694 * 109.48112 * 180.02562 * 9 8 5 12 12 H 1.08003 * 119.99885 * 120.00217 * 11 9 8 13 13 C 1.37875 * 120.00132 * 299.99924 * 11 9 8 14 14 N 1.31515 * 119.99929 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99901 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47241 * 179.97438 * 15 13 11 17 17 H 1.48499 * 109.47089 * 299.99890 * 15 13 11 18 18 H 1.48494 * 109.47355 * 59.99881 * 15 13 11 19 19 C 1.52968 * 109.39734 * 300.05414 * 9 8 5 20 20 H 1.09004 * 109.49979 * 300.14928 * 19 9 8 21 21 C 1.53078 * 109.50568 * 179.87150 * 19 9 8 22 22 C 1.53150 * 109.00364 * 182.23992 * 21 19 9 23 23 C 1.53027 * 109.33079 * 57.63971 * 22 21 19 24 24 N 1.46816 * 109.44114 * 175.10742 * 3 2 1 25 25 H 4.44576 * 5.63545 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47905 * 180.25189 * 4 3 2 27 27 H 1.09005 * 109.49037 * 60.22009 * 4 3 2 28 28 H 1.09007 * 109.47593 * 279.36223 * 7 5 4 29 29 H 1.09003 * 109.46958 * 39.36468 * 7 5 4 30 30 H 1.09003 * 109.47624 * 159.36315 * 7 5 4 31 31 H 1.08994 * 109.46203 * 299.85300 * 8 5 4 32 32 H 1.08994 * 109.46685 * 179.87835 * 8 5 4 33 33 H 0.97002 * 119.99933 * 180.02562 * 14 13 11 34 34 H 1.08995 * 109.53517 * 62.41444 * 21 19 9 35 35 H 1.08997 * 109.68949 * 302.16043 * 21 19 9 36 36 H 1.09002 * 109.48899 * 297.69182 * 22 21 19 37 37 H 1.08992 * 109.49625 * 177.60345 * 22 21 19 38 38 H 1.09002 * 109.44919 * 180.91979 * 23 22 21 39 39 H 1.09003 * 109.44575 * 61.00075 * 23 22 21 40 40 H 1.00896 * 110.99996 * 182.04393 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 -0.8294 -1.1796 5 6 2.6402 -2.2644 -1.0518 6 1 3.0033 -2.8567 -1.8917 7 6 1.1103 -2.2590 -1.0562 8 6 3.1439 -2.8742 0.2578 9 6 2.6371 -2.0417 1.4377 10 1 1.5472 -2.0356 1.4367 11 6 3.1342 -2.6427 2.7271 12 1 3.7576 -2.0602 3.3894 13 6 2.7933 -3.9361 3.0614 14 7 2.0346 -4.6456 2.2548 15 14 3.4090 -4.6808 4.6601 16 1 2.9054 -6.0723 4.7843 17 1 4.8939 -4.6891 4.6627 18 1 2.9166 -3.8728 5.8045 19 6 3.1558 -0.6085 1.3082 20 1 4.2458 -0.6148 1.3062 21 6 2.6475 0.2273 2.4857 22 6 3.1265 1.6720 2.3153 23 6 2.6252 2.2173 0.9762 24 7 3.1340 1.3803 -0.1181 25 1 -1.0499 0.0000 -0.0003 26 1 4.2456 -0.8330 -1.1775 27 1 2.7952 -0.3954 -2.1123 28 1 0.7449 -2.0003 -0.0623 29 1 0.7517 -1.5247 -1.7777 30 1 0.7441 -3.2480 -1.3318 31 1 4.2338 -2.8809 0.2598 32 1 2.7744 -3.8955 0.3487 33 1 1.7944 -5.5554 2.4902 34 1 3.0402 -0.1792 3.4176 35 1 1.5580 0.2050 2.5087 36 1 4.2161 1.6984 2.3337 37 1 2.7336 2.2837 3.1273 38 1 2.9788 3.2400 0.8456 39 1 1.5353 2.2062 0.9651 40 1 4.1420 1.4054 -0.1539 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238466884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:32 Heat of formation + Delta-G solvation = 47.075686 kcal Electronic energy + Delta-G solvation = -19622.291858 eV Core-core repulsion = 17016.767777 eV Total energy + Delta-G solvation = -2605.524081 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.18672 -35.97480 -33.70458 -31.79714 -31.54967 -30.44876 -28.38761 -25.81617 -24.83394 -23.33410 -22.07894 -21.03109 -19.96201 -18.16730 -16.69037 -16.54148 -15.29512 -14.71293 -14.61637 -14.33090 -13.83299 -13.49750 -13.27150 -12.55122 -12.35814 -12.11002 -11.89513 -11.68958 -11.28733 -11.05557 -10.92057 -10.83802 -10.74495 -10.64850 -10.33070 -10.23223 -9.96312 -9.70899 -9.53870 -9.45515 -9.05441 -8.80029 -8.54882 -8.23188 -7.80176 -5.94564 -4.00359 3.31602 3.36871 3.39012 3.42287 3.51134 4.44912 4.65172 4.85233 5.28218 5.35441 5.40949 5.51877 5.58309 5.69632 5.87641 5.93859 5.98472 6.06215 6.21747 6.30351 6.31591 6.41089 6.44350 6.53484 6.58463 6.68129 6.78782 6.85139 6.92897 7.03009 7.05720 7.19551 7.22426 7.43257 7.54462 7.70072 7.79683 8.07495 8.18905 8.28424 8.49373 9.02192 9.63075 11.10230 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023314 B = 0.009645 C = 0.007936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.693154 B = 2902.499867 C = 3527.444630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.110 4.110 3 C 0.223 3.777 4 C -0.092 4.092 5 C -0.092 4.092 6 H 0.051 0.949 7 C -0.155 4.155 8 C -0.108 4.108 9 C 0.059 3.941 10 H 0.036 0.964 11 C -0.510 4.510 12 H 0.053 0.947 13 C 0.063 3.937 14 N -0.887 5.887 15 Si 0.885 3.115 16 H -0.288 1.288 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.095 4.095 20 H 0.061 0.939 21 C -0.106 4.106 22 C -0.159 4.159 23 C 0.058 3.942 24 N -0.679 5.679 25 H 0.209 0.791 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.031 0.969 32 H 0.093 0.907 33 H 0.259 0.741 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.626 9.126 -4.312 10.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.110 4.110 3 C 0.132 3.868 4 C -0.130 4.130 5 C -0.111 4.111 6 H 0.069 0.931 7 C -0.211 4.211 8 C -0.146 4.146 9 C 0.040 3.960 10 H 0.054 0.946 11 C -0.549 4.549 12 H 0.071 0.929 13 C -0.138 4.138 14 N -0.526 5.526 15 Si 0.714 3.286 16 H -0.214 1.214 17 H -0.204 1.204 18 H -0.205 1.205 19 C -0.115 4.115 20 H 0.079 0.921 21 C -0.143 4.143 22 C -0.198 4.198 23 C -0.072 4.072 24 N -0.308 5.308 25 H 0.226 0.774 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.066 9.155 -4.786 10.331 hybrid contribution 0.710 -0.861 1.681 2.018 sum 0.776 8.295 -3.105 8.890 Atomic orbital electron populations 1.24550 0.95643 1.02806 1.03037 1.22208 0.93351 0.97410 0.98061 1.18044 0.84746 0.87541 0.96420 1.21558 0.99760 0.95530 0.96174 1.21174 0.96022 0.94151 0.99717 0.93050 1.22442 0.95859 0.99628 1.03209 1.21683 0.97916 1.03168 0.91784 1.18686 0.96633 0.87195 0.93462 0.94565 1.21158 1.31276 0.97951 1.04481 0.92877 1.24930 0.95157 0.97237 0.96517 1.69872 1.36599 1.09927 1.36202 0.86771 0.79124 0.78274 0.84473 1.21393 1.20439 1.20462 1.21837 0.99169 0.98795 0.91671 0.92058 1.21546 1.00683 0.92362 0.99726 1.22331 1.00525 0.98493 0.98483 1.21984 1.00704 0.95887 0.88603 1.60701 1.14679 1.09828 1.45574 0.77400 0.92080 0.92293 0.89699 0.94314 0.94349 0.94982 0.88833 0.93098 0.91048 0.92422 0.92565 0.92372 0.91550 0.91020 0.84038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.17 16.60 29.55 0.49 -3.68 16 2 C -0.11 -2.03 5.11 -37.12 -0.19 -2.22 16 3 C 0.22 3.96 0.66 -134.42 -0.09 3.88 16 4 C -0.09 -1.61 4.66 -26.74 -0.12 -1.74 16 5 C -0.09 -1.79 3.19 -90.62 -0.29 -2.07 16 6 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 7 C -0.15 -3.03 7.28 37.16 0.27 -2.76 16 8 C -0.11 -2.48 4.50 -26.72 -0.12 -2.60 16 9 C 0.06 1.40 1.29 -91.77 -0.12 1.28 16 10 H 0.04 0.96 5.53 -51.93 -0.29 0.68 16 11 C -0.51 -13.52 7.87 -34.44 -0.27 -13.79 16 12 H 0.05 1.40 6.73 -52.48 -0.35 1.04 16 13 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 14 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 15 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.09 -1.89 1.39 -90.57 -0.13 -2.02 16 20 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 21 C -0.11 -2.00 4.74 -26.61 -0.13 -2.13 16 22 C -0.16 -2.41 6.07 -26.64 -0.16 -2.57 16 23 C 0.06 0.84 6.30 -3.83 -0.02 0.82 16 24 N -0.68 -10.51 6.30 -102.88 -0.65 -11.16 16 25 H 0.21 2.85 7.80 -54.10 -0.42 2.43 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 28 H 0.08 1.83 3.06 -51.93 -0.16 1.67 16 29 H 0.04 0.69 6.81 -51.93 -0.35 0.34 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.07 1.45 6.72 -51.93 -0.35 1.11 16 35 H 0.06 1.16 7.30 -51.93 -0.38 0.78 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.12 6.99 -51.93 -0.36 0.76 16 40 H 0.34 4.77 8.80 -39.29 -0.35 4.42 16 LS Contribution 290.80 15.07 4.38 4.38 Total: -1.00 -27.59 290.80 -7.90 -35.49 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.27 Total: 7.43 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: -0.97 Total: -27.99 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.02 Total: -35.41 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.59 -7.90 -35.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238466884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.566 kcal (2) G-P(sol) polarization free energy of solvation -27.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds