Wall clock time and date at job start Mon Mar 30 2020 06:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52974 * 109.44470 * 54.85945 * 3 2 1 5 5 C 1.53014 * 109.40692 * 300.23525 * 4 3 2 6 6 H 1.08997 * 109.45502 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.46380 * 60.08005 * 5 4 3 8 8 C 1.52990 * 109.53542 * 300.05980 * 5 4 3 9 9 C 1.53034 * 109.52034 * 59.86392 * 8 5 4 10 10 H 1.08995 * 109.48200 * 60.04500 * 9 8 5 11 11 C 1.50694 * 109.48112 * 180.02562 * 9 8 5 12 12 H 1.08003 * 119.99885 * 120.00217 * 11 9 8 13 13 C 1.37875 * 120.00132 * 299.99924 * 11 9 8 14 14 N 1.31515 * 119.99929 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99901 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47241 * 179.97438 * 15 13 11 17 17 H 1.48499 * 109.47089 * 299.99890 * 15 13 11 18 18 H 1.48494 * 109.47355 * 59.99881 * 15 13 11 19 19 C 1.52968 * 109.39734 * 300.05414 * 9 8 5 20 20 H 1.09004 * 109.49979 * 300.14928 * 19 9 8 21 21 C 1.53078 * 109.50568 * 179.87150 * 19 9 8 22 22 C 1.53150 * 109.00364 * 182.23992 * 21 19 9 23 23 C 1.53027 * 109.33079 * 57.63971 * 22 21 19 24 24 N 1.46816 * 109.44114 * 175.10742 * 3 2 1 25 25 H 4.44576 * 5.63545 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47905 * 180.25189 * 4 3 2 27 27 H 1.09005 * 109.49037 * 60.22009 * 4 3 2 28 28 H 1.09007 * 109.47593 * 279.36223 * 7 5 4 29 29 H 1.09003 * 109.46958 * 39.36468 * 7 5 4 30 30 H 1.09003 * 109.47624 * 159.36315 * 7 5 4 31 31 H 1.08994 * 109.46203 * 299.85300 * 8 5 4 32 32 H 1.08994 * 109.46685 * 179.87835 * 8 5 4 33 33 H 0.97002 * 119.99933 * 180.02562 * 14 13 11 34 34 H 1.08995 * 109.53517 * 62.41444 * 21 19 9 35 35 H 1.08997 * 109.68949 * 302.16043 * 21 19 9 36 36 H 1.09002 * 109.48899 * 297.69182 * 22 21 19 37 37 H 1.08992 * 109.49625 * 177.60345 * 22 21 19 38 38 H 1.09002 * 109.44919 * 180.91979 * 23 22 21 39 39 H 1.09003 * 109.44575 * 61.00075 * 23 22 21 40 40 H 1.00896 * 110.99996 * 182.04393 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 -0.8294 -1.1796 5 6 2.6402 -2.2644 -1.0518 6 1 3.0033 -2.8567 -1.8917 7 6 1.1103 -2.2590 -1.0562 8 6 3.1439 -2.8742 0.2578 9 6 2.6371 -2.0417 1.4377 10 1 1.5472 -2.0356 1.4367 11 6 3.1342 -2.6427 2.7271 12 1 3.7576 -2.0602 3.3894 13 6 2.7933 -3.9361 3.0614 14 7 2.0346 -4.6456 2.2548 15 14 3.4090 -4.6808 4.6601 16 1 2.9054 -6.0723 4.7843 17 1 4.8939 -4.6891 4.6627 18 1 2.9166 -3.8728 5.8045 19 6 3.1558 -0.6085 1.3082 20 1 4.2458 -0.6148 1.3062 21 6 2.6475 0.2273 2.4857 22 6 3.1265 1.6720 2.3153 23 6 2.6252 2.2173 0.9762 24 7 3.1340 1.3803 -0.1181 25 1 -1.0499 0.0000 -0.0003 26 1 4.2456 -0.8330 -1.1775 27 1 2.7952 -0.3954 -2.1123 28 1 0.7449 -2.0003 -0.0623 29 1 0.7517 -1.5247 -1.7777 30 1 0.7441 -3.2480 -1.3318 31 1 4.2338 -2.8809 0.2598 32 1 2.7744 -3.8955 0.3487 33 1 1.7944 -5.5554 2.4902 34 1 3.0402 -0.1792 3.4176 35 1 1.5580 0.2050 2.5087 36 1 4.2161 1.6984 2.3337 37 1 2.7336 2.2837 3.1273 38 1 2.9788 3.2400 0.8456 39 1 1.5353 2.2062 0.9651 40 1 4.1420 1.4054 -0.1539 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238466884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:32 Heat of formation + Delta-G solvation = 31.186782 kcal Electronic energy + Delta-G solvation = -19622.980852 eV Core-core repulsion = 17016.767777 eV Total energy + Delta-G solvation = -2606.213076 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.66779 -37.43765 -35.48427 -33.45408 -33.03212 -31.88396 -30.02682 -27.33268 -26.79864 -24.75118 -23.54534 -22.51903 -21.55458 -19.73910 -18.49371 -18.03439 -16.90164 -16.41410 -16.01751 -15.88534 -15.33061 -15.07356 -14.75359 -14.25278 -13.88014 -13.70684 -13.42817 -13.16224 -12.89802 -12.78972 -12.61133 -12.46995 -12.38611 -12.17422 -11.91305 -11.73874 -11.66754 -11.42591 -11.31041 -10.86642 -10.75671 -10.52470 -10.29253 -10.07531 -9.16608 -8.01829 -6.14225 1.39608 1.39986 1.46974 2.07031 2.12476 2.44290 3.23237 3.38239 3.52532 3.96716 4.06740 4.12388 4.22402 4.32379 4.39343 4.43496 4.55120 4.71356 4.81268 4.92759 4.94655 4.95801 5.01127 5.06025 5.14849 5.17897 5.24815 5.29557 5.35466 5.42135 5.47507 5.52233 5.55388 5.71548 5.79166 6.06271 6.15212 6.27884 6.46840 6.55334 6.92932 6.97649 7.51738 9.00346 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.023314 B = 0.009645 C = 0.007936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.693154 B = 2902.499867 C = 3527.444630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.143 4.143 3 C 0.228 3.772 4 C -0.088 4.088 5 C -0.089 4.089 6 H 0.065 0.935 7 C -0.147 4.147 8 C -0.101 4.101 9 C 0.063 3.937 10 H 0.005 0.995 11 C -0.524 4.524 12 H 0.049 0.951 13 C 0.015 3.985 14 N -0.912 5.912 15 Si 0.941 3.059 16 H -0.287 1.287 17 H -0.273 1.273 18 H -0.276 1.276 19 C -0.090 4.090 20 H 0.057 0.943 21 C -0.103 4.103 22 C -0.150 4.150 23 C 0.061 3.939 24 N -0.672 5.672 25 H 0.235 0.765 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.029 0.971 31 H 0.025 0.975 32 H 0.057 0.943 33 H 0.257 0.743 34 H 0.047 0.953 35 H 0.038 0.962 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.252 11.009 -4.890 12.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.143 4.143 3 C 0.137 3.863 4 C -0.126 4.126 5 C -0.108 4.108 6 H 0.083 0.917 7 C -0.203 4.203 8 C -0.140 4.140 9 C 0.044 3.956 10 H 0.023 0.977 11 C -0.562 4.562 12 H 0.067 0.933 13 C -0.184 4.184 14 N -0.552 5.552 15 Si 0.768 3.232 16 H -0.213 1.213 17 H -0.198 1.198 18 H -0.201 1.201 19 C -0.110 4.110 20 H 0.076 0.924 21 C -0.141 4.141 22 C -0.189 4.189 23 C -0.069 4.069 24 N -0.302 5.302 25 H 0.252 0.748 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.706 11.054 -5.362 12.306 hybrid contribution 0.470 -1.460 1.894 2.437 sum 1.176 9.594 -3.468 10.269 Atomic orbital electron populations 1.25317 0.96598 1.01759 1.01783 1.22566 0.94077 0.98469 0.99199 1.17875 0.84696 0.88788 0.94896 1.21520 1.00558 0.93746 0.96753 1.21117 0.95937 0.95825 0.97927 0.91707 1.22347 0.95950 0.99598 1.02437 1.21500 0.97222 1.01404 0.93823 1.18548 0.94635 0.89786 0.92616 0.97692 1.21549 1.30868 0.98137 1.05684 0.93308 1.25624 0.95567 0.97855 0.99324 1.70021 1.37691 1.09942 1.37574 0.85875 0.78786 0.77407 0.81139 1.21279 1.19827 1.20123 1.21710 0.98691 0.96731 0.93852 0.92428 1.21457 0.99337 0.95061 0.98232 1.22262 1.01200 0.95668 0.99741 1.22030 1.00083 0.97140 0.87611 1.60684 1.15543 1.08092 1.45842 0.74838 0.90757 0.90665 0.91742 0.92454 0.95177 0.95650 0.92424 0.93407 0.93382 0.94333 0.91387 0.90765 0.88362 0.92228 0.82788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -7.85 16.60 74.32 1.23 -6.62 16 2 C -0.14 -5.11 5.11 31.13 0.16 -4.95 16 3 C 0.23 7.76 0.66 1.74 0.00 7.76 16 4 C -0.09 -2.89 4.66 30.59 0.14 -2.74 16 5 C -0.09 -3.41 3.19 -10.79 -0.03 -3.45 16 6 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 7 C -0.15 -5.69 7.28 71.98 0.52 -5.16 16 8 C -0.10 -4.77 4.50 30.60 0.14 -4.63 16 9 C 0.06 3.06 1.29 -11.54 -0.01 3.05 16 10 H 0.01 0.28 5.53 -2.39 -0.01 0.27 16 11 C -0.52 -28.49 7.87 25.60 0.20 -28.29 16 12 H 0.05 2.62 6.73 -2.91 -0.02 2.61 16 13 C 0.01 0.82 5.30 84.65 0.45 1.27 16 14 N -0.91 -52.84 11.32 21.45 0.24 -52.60 16 15 Si 0.94 44.03 29.54 68.60 2.03 46.06 16 16 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 17 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 C -0.09 -3.56 1.39 -10.76 -0.01 -3.57 16 20 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 21 C -0.10 -3.89 4.74 30.67 0.15 -3.75 16 22 C -0.15 -4.18 6.07 30.65 0.19 -3.99 16 23 C 0.06 1.57 6.30 86.32 0.54 2.12 16 24 N -0.67 -18.79 6.30 -479.39 -3.02 -21.81 16 25 H 0.24 6.01 7.80 -4.42 -0.03 5.98 16 26 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 27 H 0.07 2.26 8.13 -2.38 -0.02 2.24 16 28 H 0.06 2.80 3.06 -2.38 -0.01 2.80 16 29 H 0.06 1.97 6.81 -2.39 -0.02 1.96 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 33 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 34 H 0.05 1.99 6.72 -2.39 -0.02 1.97 16 35 H 0.04 1.57 7.30 -2.39 -0.02 1.55 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.06 1.72 6.99 -2.39 -0.02 1.70 16 40 H 0.35 8.60 8.80 -89.70 -0.79 7.81 16 Total: -1.00 -60.53 290.80 3.14 -57.40 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.23 Total: 23.92 kcal Atomic # 6 Polarization: -56.63 SS G_CDS: 3.66 Total: -52.97 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -2.78 Total: -74.41 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -60.53 3.14 -57.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238466884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.582 kcal (2) G-P(sol) polarization free energy of solvation -60.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds