Wall clock time and date at job start Mon Mar 30 2020 06:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52989 * 109.47336 * 2 1 4 4 H 1.09000 * 109.47117 * 302.42249 * 3 2 1 5 5 C 1.53002 * 109.47485 * 62.42544 * 3 2 1 6 6 N 1.46904 * 109.47317 * 182.42721 * 3 2 1 7 7 C 1.46897 * 110.99928 * 58.71021 * 6 3 2 8 8 C 1.46899 * 111.00194 * 182.66673 * 6 3 2 9 9 H 1.08998 * 109.47218 * 53.78328 * 8 6 3 10 10 C 1.50698 * 109.47122 * 293.77930 * 8 6 3 11 11 H 1.08000 * 119.99872 * 92.02560 * 10 8 6 12 12 C 1.37876 * 120.00208 * 272.30501 * 10 8 6 13 13 N 1.31523 * 119.99889 * 351.47688 * 12 10 8 14 14 Si 1.86796 * 120.00201 * 171.47868 * 12 10 8 15 15 H 1.48497 * 109.47229 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47471 * 120.00026 * 14 12 10 17 17 H 1.48500 * 109.47086 * 240.00086 * 14 12 10 18 18 C 1.50704 * 109.46929 * 173.78051 * 8 6 3 19 19 C 1.38237 * 119.99868 * 347.72395 * 18 8 6 20 20 C 1.38241 * 119.99549 * 179.81056 * 19 18 8 21 21 C 1.38237 * 119.99757 * 0.39869 * 20 19 18 22 22 C 1.38229 * 120.00344 * 359.85126 * 21 20 19 23 23 C 1.38236 * 119.99475 * 167.99617 * 18 8 6 24 24 H 1.08995 * 109.47399 * 183.10383 * 1 2 3 25 25 H 1.09003 * 109.46573 * 303.10462 * 1 2 3 26 26 H 1.09003 * 109.47201 * 63.09911 * 1 2 3 27 27 H 1.08999 * 109.46685 * 239.99381 * 2 1 3 28 28 H 1.09000 * 109.46899 * 119.99950 * 2 1 3 29 29 H 1.09002 * 109.46513 * 300.00064 * 5 3 2 30 30 H 1.08991 * 109.46944 * 59.99856 * 5 3 2 31 31 H 1.09001 * 109.47016 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.47224 * 185.74754 * 7 6 3 33 33 H 1.09000 * 109.47074 * 305.74974 * 7 6 3 34 34 H 1.09004 * 109.47386 * 65.75021 * 7 6 3 35 35 H 0.96998 * 119.99758 * 179.97438 * 13 12 10 36 36 H 1.07994 * 120.00259 * 359.97438 * 19 18 8 37 37 H 1.07990 * 119.99861 * 180.23187 * 20 19 18 38 38 H 1.08000 * 119.99317 * 179.83419 * 21 20 19 39 39 H 1.08002 * 119.99975 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.00667 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6417 1.9686 -0.8675 5 6 1.5806 2.1459 1.2786 6 7 3.5079 1.4428 -0.0587 7 6 3.9869 0.7473 -1.2606 8 6 4.0369 2.8118 0.0034 9 1 3.6349 3.3172 0.8815 10 6 3.6320 3.5636 -1.2383 11 1 2.7205 4.1427 -1.2458 12 6 4.4223 3.5074 -2.3667 13 7 5.6076 2.9401 -2.3118 14 14 3.8095 4.2369 -3.9734 15 1 2.4551 4.8113 -3.7716 16 1 4.7396 5.3056 -4.4185 17 1 3.7464 3.1733 -5.0078 18 6 5.5405 2.7657 0.0948 19 6 6.1802 1.5700 0.3634 20 6 7.5596 1.5270 0.4434 21 6 8.2987 2.6812 0.2630 22 6 7.6587 3.8777 -0.0005 23 6 6.2795 3.9201 -0.0843 24 1 -0.3634 -1.0261 0.0556 25 1 -0.3632 0.5613 0.8609 26 1 -0.3634 0.4650 -0.9165 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.4914 2.1456 1.3221 30 1 1.9789 1.6197 2.1460 31 1 1.9436 3.1737 1.2783 32 1 5.0739 0.6727 -1.2283 33 1 3.5550 -0.2528 -1.2981 34 1 3.6873 1.3059 -2.1474 35 1 6.1634 2.9003 -3.1058 36 1 5.6025 0.6691 0.5082 37 1 8.0596 0.5923 0.6495 38 1 9.3762 2.6480 0.3281 39 1 8.2362 4.7795 -0.1411 40 1 5.7795 4.8549 -0.2902 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251739844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:40 Heat of formation + Delta-G solvation = 43.644869 kcal Electronic energy + Delta-G solvation = -19229.347267 eV Core-core repulsion = 16623.674415 eV Total energy + Delta-G solvation = -2605.672853 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.70046 -36.85650 -33.92571 -31.78902 -29.71545 -29.51368 -28.66517 -26.79521 -24.07790 -23.85425 -21.90130 -21.04937 -19.64991 -18.70268 -16.44124 -15.47329 -15.13165 -14.67697 -14.44588 -14.11984 -13.51372 -13.33564 -12.74652 -12.64756 -12.46557 -12.02828 -11.86573 -11.66593 -11.32490 -11.11435 -11.03387 -10.88629 -10.70582 -10.59740 -10.48417 -10.29787 -9.99908 -9.78010 -9.55764 -9.37018 -9.08597 -8.62016 -7.41387 -7.34329 -6.93169 -5.72832 -4.23131 2.85815 2.89260 3.20402 3.30740 3.33217 4.32715 4.99632 5.26984 5.32511 5.50154 5.54205 5.85050 6.04220 6.06123 6.08770 6.15884 6.20575 6.28419 6.33494 6.43656 6.51983 6.57168 6.65257 6.74268 6.84959 6.91878 7.01804 7.04193 7.10946 7.23617 7.43053 7.49219 7.52262 7.76475 7.81197 7.84776 8.06637 8.15853 8.42648 8.49018 8.69335 8.85738 9.44814 10.87211 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017962 B = 0.010728 C = 0.007819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.441774 B = 2609.351633 C = 3580.284854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C 0.088 3.912 4 H 0.043 0.957 5 C -0.142 4.142 6 N -0.534 5.534 7 C 0.031 3.969 8 C 0.218 3.782 9 H 0.051 0.949 10 C -0.550 4.550 11 H 0.055 0.945 12 C 0.079 3.921 13 N -0.846 5.846 14 Si 0.880 3.120 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.040 3.960 19 C -0.122 4.122 20 C -0.139 4.139 21 C -0.157 4.157 22 C -0.139 4.139 23 C -0.056 4.056 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.025 0.975 34 H 0.037 0.963 35 H 0.260 0.740 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.806 -2.976 4.047 5.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.021 4.021 4 H 0.061 0.939 5 C -0.199 4.199 6 N -0.258 5.258 7 C -0.117 4.117 8 C 0.113 3.887 9 H 0.069 0.931 10 C -0.589 4.589 11 H 0.073 0.927 12 C -0.127 4.127 13 N -0.481 5.481 14 Si 0.708 3.292 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.210 1.210 18 C 0.038 3.962 19 C -0.141 4.141 20 C -0.158 4.158 21 C -0.175 4.175 22 C -0.157 4.157 23 C -0.075 4.075 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.469 -3.280 4.328 5.965 hybrid contribution -0.445 0.838 -2.099 2.303 sum -2.914 -2.442 2.229 4.407 Atomic orbital electron populations 1.21816 0.96817 1.00566 1.01563 1.21636 0.94404 0.97835 1.01767 1.21282 0.90072 0.93828 0.96897 0.93942 1.21884 0.99183 1.00932 0.97917 1.62696 1.06004 1.18864 1.38211 1.22428 1.01533 0.94877 0.92862 1.18470 0.88778 0.85932 0.95551 0.93135 1.21510 1.08382 1.32208 0.96841 0.92713 1.24946 0.94403 0.94669 0.98633 1.70196 1.07809 1.42265 1.27826 0.86718 0.79056 0.78999 0.84431 1.19971 1.21026 1.21010 1.19431 0.95308 0.92045 0.89404 1.20865 0.93185 0.98158 1.01866 1.20719 0.94661 0.96547 1.03825 1.20532 0.97449 0.93700 1.05823 1.20654 0.94872 0.96441 1.03779 1.20464 0.92508 0.98164 0.96415 0.93599 0.92681 0.93223 0.92242 0.92165 0.93587 0.93001 0.92364 0.90255 0.95612 0.94409 0.92806 0.86658 0.88993 0.89152 0.89065 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.70 37.16 0.36 -1.68 16 2 C -0.12 -1.92 5.25 -26.73 -0.14 -2.06 16 3 C 0.09 1.67 1.91 -67.71 -0.13 1.54 16 4 H 0.04 0.91 7.38 -51.93 -0.38 0.53 16 5 C -0.14 -2.41 8.60 37.16 0.32 -2.09 16 6 N -0.53 -11.33 3.72 -229.70 -0.85 -12.18 16 7 C 0.03 0.68 7.21 60.06 0.43 1.12 16 8 C 0.22 5.04 2.39 -70.02 -0.17 4.88 16 9 H 0.05 1.17 5.92 -51.93 -0.31 0.86 16 10 C -0.55 -13.72 6.58 -34.44 -0.23 -13.94 16 11 H 0.05 1.41 7.83 -52.49 -0.41 1.00 16 12 C 0.08 1.98 3.31 -17.82 -0.06 1.92 16 13 N -0.85 -21.54 7.97 55.43 0.44 -21.09 16 14 Si 0.88 20.31 29.55 -169.99 -5.02 15.28 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.04 0.93 3.08 -104.62 -0.32 0.61 16 19 C -0.12 -2.71 7.43 -39.58 -0.29 -3.00 16 20 C -0.14 -2.89 10.05 -39.58 -0.40 -3.29 16 21 C -0.16 -3.20 10.05 -39.59 -0.40 -3.60 16 22 C -0.14 -2.97 10.05 -39.58 -0.40 -3.36 16 23 C -0.06 -1.30 7.06 -39.58 -0.28 -1.58 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.71 6.34 -51.93 -0.33 0.38 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.00 6.13 -51.93 -0.32 0.68 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.68 6.42 -51.93 -0.33 0.35 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.06 6.23 -51.93 -0.32 0.74 16 32 H 0.08 1.87 4.74 -51.93 -0.25 1.62 16 33 H 0.03 0.51 5.93 -51.93 -0.31 0.20 16 34 H 0.04 0.93 5.74 -51.93 -0.30 0.63 16 35 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 36 H 0.12 2.53 6.01 -52.49 -0.32 2.21 16 37 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 38 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.10 2.41 7.65 -52.49 -0.40 2.01 16 LS Contribution 296.56 15.07 4.47 4.47 Total: -1.00 -25.14 296.56 -8.73 -33.87 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.07 Total: 4.20 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -1.70 Total: -24.55 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: -0.41 Total: -33.27 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -25.14 -8.73 -33.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251739844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.515 kcal (2) G-P(sol) polarization free energy of solvation -25.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds