Wall clock time and date at job start Mon Mar 30 2020 06:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52989 * 109.47336 * 2 1 4 4 H 1.09000 * 109.47117 * 302.42249 * 3 2 1 5 5 C 1.53002 * 109.47485 * 62.42544 * 3 2 1 6 6 N 1.46904 * 109.47317 * 182.42721 * 3 2 1 7 7 C 1.46897 * 110.99928 * 58.71021 * 6 3 2 8 8 C 1.46899 * 111.00194 * 182.66673 * 6 3 2 9 9 H 1.08998 * 109.47218 * 53.78328 * 8 6 3 10 10 C 1.50698 * 109.47122 * 293.77930 * 8 6 3 11 11 H 1.08000 * 119.99872 * 92.02560 * 10 8 6 12 12 C 1.37876 * 120.00208 * 272.30501 * 10 8 6 13 13 N 1.31523 * 119.99889 * 351.47688 * 12 10 8 14 14 Si 1.86796 * 120.00201 * 171.47868 * 12 10 8 15 15 H 1.48497 * 109.47229 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47471 * 120.00026 * 14 12 10 17 17 H 1.48500 * 109.47086 * 240.00086 * 14 12 10 18 18 C 1.50704 * 109.46929 * 173.78051 * 8 6 3 19 19 C 1.38237 * 119.99868 * 347.72395 * 18 8 6 20 20 C 1.38241 * 119.99549 * 179.81056 * 19 18 8 21 21 C 1.38237 * 119.99757 * 0.39869 * 20 19 18 22 22 C 1.38229 * 120.00344 * 359.85126 * 21 20 19 23 23 C 1.38236 * 119.99475 * 167.99617 * 18 8 6 24 24 H 1.08995 * 109.47399 * 183.10383 * 1 2 3 25 25 H 1.09003 * 109.46573 * 303.10462 * 1 2 3 26 26 H 1.09003 * 109.47201 * 63.09911 * 1 2 3 27 27 H 1.08999 * 109.46685 * 239.99381 * 2 1 3 28 28 H 1.09000 * 109.46899 * 119.99950 * 2 1 3 29 29 H 1.09002 * 109.46513 * 300.00064 * 5 3 2 30 30 H 1.08991 * 109.46944 * 59.99856 * 5 3 2 31 31 H 1.09001 * 109.47016 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.47224 * 185.74754 * 7 6 3 33 33 H 1.09000 * 109.47074 * 305.74974 * 7 6 3 34 34 H 1.09004 * 109.47386 * 65.75021 * 7 6 3 35 35 H 0.96998 * 119.99758 * 179.97438 * 13 12 10 36 36 H 1.07994 * 120.00259 * 359.97438 * 19 18 8 37 37 H 1.07990 * 119.99861 * 180.23187 * 20 19 18 38 38 H 1.08000 * 119.99317 * 179.83419 * 21 20 19 39 39 H 1.08002 * 119.99975 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.00667 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6417 1.9686 -0.8675 5 6 1.5806 2.1459 1.2786 6 7 3.5079 1.4428 -0.0587 7 6 3.9869 0.7473 -1.2606 8 6 4.0369 2.8118 0.0034 9 1 3.6349 3.3172 0.8815 10 6 3.6320 3.5636 -1.2383 11 1 2.7205 4.1427 -1.2458 12 6 4.4223 3.5074 -2.3667 13 7 5.6076 2.9401 -2.3118 14 14 3.8095 4.2369 -3.9734 15 1 2.4551 4.8113 -3.7716 16 1 4.7396 5.3056 -4.4185 17 1 3.7464 3.1733 -5.0078 18 6 5.5405 2.7657 0.0948 19 6 6.1802 1.5700 0.3634 20 6 7.5596 1.5270 0.4434 21 6 8.2987 2.6812 0.2630 22 6 7.6587 3.8777 -0.0005 23 6 6.2795 3.9201 -0.0843 24 1 -0.3634 -1.0261 0.0556 25 1 -0.3632 0.5613 0.8609 26 1 -0.3634 0.4650 -0.9165 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.4914 2.1456 1.3221 30 1 1.9789 1.6197 2.1460 31 1 1.9436 3.1737 1.2783 32 1 5.0739 0.6727 -1.2283 33 1 3.5550 -0.2528 -1.2981 34 1 3.6873 1.3059 -2.1474 35 1 6.1634 2.9003 -3.1058 36 1 5.6025 0.6691 0.5082 37 1 8.0596 0.5923 0.6495 38 1 9.3762 2.6480 0.3281 39 1 8.2362 4.7795 -0.1411 40 1 5.7795 4.8549 -0.2902 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251739844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:40 Heat of formation + Delta-G solvation = 32.102640 kcal Electronic energy + Delta-G solvation = -19229.847776 eV Core-core repulsion = 16623.674415 eV Total energy + Delta-G solvation = -2606.173361 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.41082 -38.45600 -35.56491 -33.51933 -31.44449 -31.10798 -30.18623 -28.55821 -25.89252 -25.30409 -23.48776 -22.74309 -21.30738 -20.32763 -18.26283 -17.22390 -16.86605 -16.44794 -15.85026 -15.78354 -15.19218 -14.97370 -14.43117 -14.23965 -13.96738 -13.67749 -13.46008 -13.16592 -12.89377 -12.84939 -12.75428 -12.45662 -12.33962 -12.25855 -12.05283 -11.92235 -11.70562 -11.31171 -11.26419 -10.94873 -10.86196 -10.54430 -9.15683 -9.09482 -8.70335 -7.62324 -6.19960 1.13963 1.20140 1.32687 1.39578 1.44601 2.40466 3.15009 3.52754 3.65823 4.19610 4.21931 4.50332 4.54063 4.56418 4.64720 4.69778 4.74212 4.79875 4.84522 4.96089 5.10705 5.15877 5.21808 5.23594 5.27135 5.29328 5.33920 5.39802 5.57436 5.62753 5.65962 5.71388 5.77056 5.83111 6.11746 6.12533 6.21245 6.41396 6.61525 6.78185 6.92533 6.98109 7.47975 8.89776 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.017962 B = 0.010728 C = 0.007819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.441774 B = 2609.351633 C = 3580.284854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C 0.084 3.916 4 H 0.013 0.987 5 C -0.134 4.134 6 N -0.528 5.528 7 C 0.045 3.955 8 C 0.219 3.781 9 H 0.044 0.956 10 C -0.558 4.558 11 H 0.036 0.964 12 C 0.055 3.945 13 N -0.850 5.850 14 Si 0.923 3.077 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.286 1.286 18 C 0.023 3.977 19 C -0.129 4.129 20 C -0.141 4.141 21 C -0.155 4.155 22 C -0.143 4.143 23 C -0.076 4.076 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.007 0.993 35 H 0.254 0.746 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.110 0.890 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 -4.128 4.659 6.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.025 4.025 4 H 0.031 0.969 5 C -0.191 4.191 6 N -0.252 5.252 7 C -0.103 4.103 8 C 0.113 3.887 9 H 0.061 0.939 10 C -0.597 4.597 11 H 0.055 0.945 12 C -0.150 4.150 13 N -0.485 5.485 14 Si 0.751 3.249 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.212 1.212 18 C 0.021 3.979 19 C -0.148 4.148 20 C -0.159 4.159 21 C -0.174 4.174 22 C -0.161 4.161 23 C -0.095 4.095 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.026 0.974 35 H 0.065 0.935 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.128 0.872 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.236 -4.431 4.947 7.008 hybrid contribution -0.513 1.199 -2.256 2.606 sum -2.749 -3.232 2.691 5.024 Atomic orbital electron populations 1.21772 0.94550 1.02136 1.01751 1.21567 0.96347 0.95411 1.01630 1.21419 0.88515 0.95841 0.96677 0.96904 1.21814 1.00752 0.99501 0.97078 1.62689 1.07517 1.17554 1.37391 1.22245 1.00707 0.95547 0.91839 1.18390 0.89311 0.86604 0.94387 0.93853 1.21536 1.07713 1.32418 0.98059 0.94520 1.25269 0.94555 0.95097 1.00072 1.70334 1.07973 1.42672 1.27546 0.86064 0.78293 0.78249 0.82330 1.20478 1.21080 1.21207 1.19488 0.95242 0.92683 0.90439 1.20922 0.94116 0.97584 1.02171 1.21060 0.94143 0.97988 1.02707 1.20887 0.99107 0.92972 1.04399 1.20910 0.94242 0.97872 1.03104 1.20438 0.93575 0.97497 0.98002 0.91443 0.91712 0.93745 0.93106 0.91446 0.91108 0.92185 0.94302 0.91665 0.93512 0.97404 0.93509 0.86740 0.86227 0.86027 0.87211 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.70 71.98 0.70 -2.88 16 2 C -0.11 -3.44 5.25 30.59 0.16 -3.28 16 3 C 0.08 3.17 1.91 44.91 0.09 3.26 16 4 H 0.01 0.56 7.38 -2.39 -0.02 0.55 16 5 C -0.13 -4.45 8.60 71.98 0.62 -3.83 16 6 N -0.53 -22.47 3.72 -880.63 -3.28 -25.75 16 7 C 0.04 1.99 7.21 127.69 0.92 2.91 16 8 C 0.22 10.35 2.39 43.42 0.10 10.45 16 9 H 0.04 2.08 5.92 -2.39 -0.01 2.06 16 10 C -0.56 -28.65 6.58 25.60 0.17 -28.48 16 11 H 0.04 1.97 7.83 -2.91 -0.02 1.94 16 12 C 0.05 2.79 3.31 84.65 0.28 3.07 16 13 N -0.85 -43.69 7.97 21.45 0.17 -43.52 16 14 Si 0.92 42.39 29.55 68.60 2.03 44.42 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 17 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 18 C 0.02 1.08 3.08 -19.86 -0.06 1.02 16 19 C -0.13 -5.64 7.43 22.27 0.17 -5.47 16 20 C -0.14 -5.53 10.05 22.27 0.22 -5.31 16 21 C -0.16 -5.96 10.05 22.27 0.22 -5.73 16 22 C -0.14 -5.92 10.05 22.27 0.22 -5.70 16 23 C -0.08 -3.54 7.06 22.27 0.16 -3.38 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.06 1.48 6.34 -2.39 -0.02 1.46 16 26 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.64 6.13 -2.39 -0.01 1.62 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 1.97 6.42 -2.39 -0.02 1.96 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.04 1.42 6.23 -2.39 -0.01 1.41 16 32 H 0.06 3.06 4.74 -2.39 -0.01 3.05 16 33 H 0.05 1.83 5.93 -2.39 -0.01 1.81 16 34 H 0.01 0.37 5.74 -2.38 -0.01 0.36 16 35 H 0.25 13.06 8.31 -92.71 -0.77 12.29 16 36 H 0.11 4.93 6.01 -2.91 -0.02 4.91 16 37 H 0.12 3.99 8.06 -2.92 -0.02 3.96 16 38 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 39 H 0.11 4.04 8.06 -2.91 -0.02 4.02 16 40 H 0.08 4.06 7.65 -2.91 -0.02 4.04 16 Total: -1.00 -53.50 296.56 3.90 -49.60 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 1.01 Total: 18.60 kcal Atomic # 6 Polarization: -47.32 SS G_CDS: 3.97 Total: -43.35 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -3.11 Total: -69.26 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -53.50 3.90 -49.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251739844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.700 kcal (2) G-P(sol) polarization free energy of solvation -53.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds