Wall clock time and date at job start Mon Mar 30 2020 05:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.38239 * 119.99743 * 269.72597 * 5 4 2 7 7 C 1.38236 * 119.99796 * 179.76891 * 6 5 4 8 8 C 1.38242 * 119.99871 * 0.48508 * 7 6 5 9 9 C 1.50705 * 120.00026 * 179.76896 * 8 7 6 10 10 C 1.52994 * 109.46944 * 270.02533 * 9 8 7 11 11 N 1.46504 * 109.46818 * 179.97438 * 10 9 8 12 12 C 1.36945 * 119.99926 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99536 * 0.02562 * 12 11 10 14 14 C 1.38812 * 120.00119 * 179.97438 * 12 11 10 15 15 N 1.31618 * 119.99754 * 0.02562 * 14 12 11 16 16 Si 1.86789 * 120.00071 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47184 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47284 * 120.00249 * 16 14 12 19 19 H 1.48507 * 109.47395 * 240.00259 * 16 14 12 20 20 C 1.38230 * 119.99757 * 359.79237 * 8 7 6 21 21 C 1.38231 * 120.00640 * 359.95396 * 20 8 7 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 26 26 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 28 28 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 29 29 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 30 30 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 31 31 H 1.07997 * 120.00611 * 359.97438 * 6 5 4 32 32 H 1.08001 * 120.00122 * 180.25296 * 7 6 5 33 33 H 1.09002 * 109.46631 * 30.02350 * 9 8 7 34 34 H 1.08996 * 109.46819 * 150.02234 * 9 8 7 35 35 H 1.09002 * 109.47307 * 299.99402 * 10 9 8 36 36 H 1.08996 * 109.47607 * 60.00184 * 10 9 8 37 37 H 0.96997 * 120.00417 * 359.97438 * 11 10 9 38 38 H 0.96996 * 120.00233 * 180.02562 * 15 14 12 39 39 H 1.08007 * 119.99539 * 179.97438 * 20 8 7 40 40 H 1.08000 * 120.00464 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.3291 0.1685 -1.7323 7 6 5.7068 0.0716 -1.6726 8 6 6.2973 -1.0281 -1.0783 9 6 7.7992 -1.1363 -1.0179 10 6 8.3092 -1.8574 -2.2671 11 7 9.7693 -1.9620 -2.2086 12 6 10.4532 -2.5744 -3.2249 13 1 9.9161 -2.9798 -4.0696 14 6 11.8367 -2.6730 -3.1698 15 7 12.4912 -2.1785 -2.1405 16 14 12.7695 -3.5076 -4.5563 17 1 11.8091 -3.9745 -5.5883 18 1 13.7193 -2.5421 -5.1654 19 1 13.5218 -4.6693 -4.0179 20 6 5.5100 -2.0287 -0.5400 21 6 4.1324 -1.9293 -0.5949 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6054 -1.7198 -1.2951 30 1 1.7517 -0.1583 -2.1369 31 1 3.8680 1.0254 -2.2006 32 1 6.3219 0.8531 -2.0936 33 1 8.2338 -0.1377 -0.9719 34 1 8.0875 -1.6992 -0.1302 35 1 7.8747 -2.8560 -2.3131 36 1 8.0210 -1.2945 -3.1548 37 1 10.2517 -1.5976 -1.4501 38 1 13.4580 -2.2471 -2.1021 39 1 5.9713 -2.8880 -0.0760 40 1 3.5173 -2.7109 -0.1739 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258669891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:13 Heat of formation + Delta-G solvation = 1.730226 kcal Electronic energy + Delta-G solvation = -17017.941571 eV Core-core repulsion = 14410.451163 eV Total energy + Delta-G solvation = -2607.490408 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.57373 -36.69514 -34.96857 -32.75385 -30.85451 -30.77501 -28.52035 -27.36672 -25.74648 -23.49829 -22.56117 -21.61074 -20.54066 -20.00624 -17.12841 -16.09619 -15.58347 -15.08378 -14.71051 -14.61342 -14.44142 -13.65774 -13.46785 -13.41649 -13.18092 -13.06616 -12.47170 -12.38904 -12.23314 -11.97383 -11.47244 -11.23111 -11.10539 -10.94237 -10.88318 -10.78156 -10.72372 -10.53041 -10.50943 -10.00668 -9.68807 -8.85616 -8.73529 -8.27057 -6.89148 -5.73873 -3.02497 1.50279 1.56999 3.45331 3.50764 3.53307 3.88902 4.59875 4.63191 4.65343 4.76379 4.98720 5.09785 5.14262 5.21767 5.30654 5.40786 5.46038 5.57095 5.60485 5.65954 5.66717 5.69751 5.79441 5.86542 5.90030 5.99351 6.06588 6.09441 6.13375 6.25054 6.32927 6.38415 6.62202 6.72445 6.73713 6.88556 7.03756 7.19420 7.73480 8.45298 9.56188 10.14343 10.49404 11.49314 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.062292 B = 0.003253 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.387588 B = 8606.081673 C = 8678.705347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.151 4.151 4 C -0.074 4.074 5 C -0.094 4.094 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.067 4.067 9 C -0.092 4.092 10 C 0.161 3.839 11 N -0.735 5.735 12 C -0.237 4.237 13 H 0.071 0.929 14 C -0.016 4.016 15 N -0.935 5.935 16 Si 0.908 3.092 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C -0.114 4.114 21 C -0.118 4.118 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.121 0.879 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.146 5.251 4.944 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.111 4.111 5 C -0.094 4.094 6 C -0.133 4.133 7 C -0.133 4.133 8 C -0.067 4.067 9 C -0.130 4.130 10 C 0.033 3.967 11 N -0.379 5.379 12 C -0.368 4.368 13 H 0.089 0.911 14 C -0.212 4.212 15 N -0.584 5.584 16 Si 0.739 3.261 17 H -0.205 1.205 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.133 4.133 21 C -0.136 4.136 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.139 0.861 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -23.116 5.162 4.779 24.163 hybrid contribution 0.806 -0.355 -0.508 1.017 sum -22.310 4.807 4.271 23.218 Atomic orbital electron populations 1.21857 0.95310 1.01618 1.01688 1.21084 0.95182 0.96612 0.98116 1.21919 1.01936 0.95631 1.01300 1.20639 0.91421 1.00906 0.98126 1.19744 0.95172 0.95033 0.99436 1.20958 0.93520 0.98495 1.00361 1.21088 0.94578 0.98174 0.99496 1.19971 0.96016 0.94029 0.96730 1.20825 0.89913 1.01976 1.00236 1.20590 0.85935 0.96414 0.93714 1.42401 1.00086 1.70245 1.25185 1.19295 0.89430 1.29024 0.99073 0.91136 1.24752 0.96425 1.01812 0.98207 1.69673 1.07112 1.51231 1.30345 0.86102 0.79874 0.78761 0.81388 1.20545 1.21863 1.21855 1.21077 0.93411 0.98649 1.00114 1.20948 0.94675 0.97716 1.00230 0.92725 0.92759 0.92763 0.91157 0.91894 0.92869 0.93062 0.91281 0.91260 0.86557 0.86112 0.90998 0.91002 0.96292 0.96299 0.78297 0.93578 0.86110 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.19 37.16 0.34 -0.65 16 2 C -0.09 -0.75 2.91 -90.62 -0.26 -1.01 16 3 C -0.15 -1.24 8.78 37.16 0.33 -0.92 16 4 C -0.07 -0.66 4.84 -27.89 -0.13 -0.79 16 5 C -0.09 -1.07 4.70 -104.62 -0.49 -1.57 16 6 C -0.12 -1.39 7.98 -39.58 -0.32 -1.71 16 7 C -0.12 -1.60 9.70 -39.58 -0.38 -1.98 16 8 C -0.07 -1.01 5.13 -104.62 -0.54 -1.55 16 9 C -0.09 -1.59 5.46 -27.88 -0.15 -1.74 16 10 C 0.16 3.43 6.24 -4.04 -0.03 3.41 16 11 N -0.73 -19.43 5.60 -59.91 -0.34 -19.76 16 12 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 13 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 14 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 15 N -0.93 -28.89 13.06 55.49 0.72 -28.16 16 16 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 C -0.11 -1.59 9.70 -39.59 -0.38 -1.98 16 21 C -0.12 -1.43 9.70 -39.58 -0.38 -1.82 16 22 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.60 6.28 -51.93 -0.33 0.27 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 30 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.12 1.18 8.05 -52.49 -0.42 0.76 16 32 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 34 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.38 10.52 7.67 -40.82 -0.31 10.21 16 38 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 329.16 15.07 4.96 4.96 Total: -1.00 -31.12 329.16 -9.26 -40.38 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.94 Total: 4.64 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -2.65 Total: -19.91 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.39 Total: -47.92 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.12 -9.26 -40.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258669891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.115 kcal (2) G-P(sol) polarization free energy of solvation -31.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds