Wall clock time and date at job start Mon Mar 30 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.38239 * 119.99743 * 269.72597 * 5 4 2 7 7 C 1.38236 * 119.99796 * 179.76891 * 6 5 4 8 8 C 1.38242 * 119.99871 * 0.48508 * 7 6 5 9 9 C 1.50705 * 120.00026 * 179.76896 * 8 7 6 10 10 C 1.52994 * 109.46944 * 270.02533 * 9 8 7 11 11 N 1.46504 * 109.46818 * 179.97438 * 10 9 8 12 12 C 1.36945 * 119.99926 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99536 * 0.02562 * 12 11 10 14 14 C 1.38812 * 120.00119 * 179.97438 * 12 11 10 15 15 N 1.31618 * 119.99754 * 0.02562 * 14 12 11 16 16 Si 1.86789 * 120.00071 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47184 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47284 * 120.00249 * 16 14 12 19 19 H 1.48507 * 109.47395 * 240.00259 * 16 14 12 20 20 C 1.38230 * 119.99757 * 359.79237 * 8 7 6 21 21 C 1.38231 * 120.00640 * 359.95396 * 20 8 7 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 26 26 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 28 28 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 29 29 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 30 30 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 31 31 H 1.07997 * 120.00611 * 359.97438 * 6 5 4 32 32 H 1.08001 * 120.00122 * 180.25296 * 7 6 5 33 33 H 1.09002 * 109.46631 * 30.02350 * 9 8 7 34 34 H 1.08996 * 109.46819 * 150.02234 * 9 8 7 35 35 H 1.09002 * 109.47307 * 299.99402 * 10 9 8 36 36 H 1.08996 * 109.47607 * 60.00184 * 10 9 8 37 37 H 0.96997 * 120.00417 * 359.97438 * 11 10 9 38 38 H 0.96996 * 120.00233 * 180.02562 * 15 14 12 39 39 H 1.08007 * 119.99539 * 179.97438 * 20 8 7 40 40 H 1.08000 * 120.00464 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.3291 0.1685 -1.7323 7 6 5.7068 0.0716 -1.6726 8 6 6.2973 -1.0281 -1.0783 9 6 7.7992 -1.1363 -1.0179 10 6 8.3092 -1.8574 -2.2671 11 7 9.7693 -1.9620 -2.2086 12 6 10.4532 -2.5744 -3.2249 13 1 9.9161 -2.9798 -4.0696 14 6 11.8367 -2.6730 -3.1698 15 7 12.4912 -2.1785 -2.1405 16 14 12.7695 -3.5076 -4.5563 17 1 11.8091 -3.9745 -5.5883 18 1 13.7193 -2.5421 -5.1654 19 1 13.5218 -4.6693 -4.0179 20 6 5.5100 -2.0287 -0.5400 21 6 4.1324 -1.9293 -0.5949 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6054 -1.7198 -1.2951 30 1 1.7517 -0.1583 -2.1369 31 1 3.8680 1.0254 -2.2006 32 1 6.3219 0.8531 -2.0936 33 1 8.2338 -0.1377 -0.9719 34 1 8.0875 -1.6992 -0.1302 35 1 7.8747 -2.8560 -2.3131 36 1 8.0210 -1.2945 -3.1548 37 1 10.2517 -1.5976 -1.4501 38 1 13.4580 -2.2471 -2.1021 39 1 5.9713 -2.8880 -0.0760 40 1 3.5173 -2.7109 -0.1739 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258669891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:12 Heat of formation + Delta-G solvation = -14.215396 kcal Electronic energy + Delta-G solvation = -17018.633025 eV Core-core repulsion = 14410.451163 eV Total energy + Delta-G solvation = -2608.181862 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.56421 -37.67678 -36.60125 -34.33590 -32.51113 -31.79083 -29.90440 -27.96011 -27.06424 -25.23532 -23.56686 -23.20191 -21.64877 -20.76186 -19.23685 -17.10453 -16.73802 -16.59171 -16.02502 -15.57105 -15.44496 -15.18052 -15.03717 -14.89954 -14.25415 -14.16274 -13.52742 -13.34437 -13.01970 -12.99292 -12.87432 -12.71319 -12.53094 -12.30486 -12.22704 -12.06089 -11.79871 -11.76748 -11.62665 -11.46179 -11.41845 -10.98242 -9.75367 -9.32583 -9.05337 -7.98436 -5.28695 0.46616 0.55790 1.45937 1.47376 1.57840 2.53713 2.86926 3.34930 3.73566 3.90591 3.92433 4.07412 4.13535 4.21500 4.31927 4.37547 4.42421 4.46360 4.64428 4.65049 4.72973 4.81987 4.85647 4.89405 4.99986 5.10341 5.10482 5.13286 5.18385 5.25491 5.29243 5.38094 5.45264 5.47295 5.51506 5.59582 5.78665 5.82901 6.18150 6.24282 7.29743 8.03615 8.28813 9.25446 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.062292 B = 0.003253 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.387588 B = 8606.081673 C = 8678.705347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.151 4.151 4 C -0.072 4.072 5 C -0.087 4.087 6 C -0.116 4.116 7 C -0.126 4.126 8 C -0.089 4.089 9 C -0.076 4.076 10 C 0.163 3.837 11 N -0.748 5.748 12 C -0.249 4.249 13 H 0.074 0.926 14 C -0.076 4.076 15 N -0.970 5.970 16 Si 0.978 3.022 17 H -0.266 1.266 18 H -0.290 1.290 19 H -0.290 1.290 20 C -0.125 4.125 21 C -0.121 4.121 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.137 0.863 32 H 0.122 0.878 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.375 0.625 38 H 0.253 0.747 39 H 0.122 0.878 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.225 5.135 4.320 26.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C -0.208 4.208 4 C -0.109 4.109 5 C -0.087 4.087 6 C -0.133 4.133 7 C -0.144 4.144 8 C -0.090 4.090 9 C -0.114 4.114 10 C 0.037 3.963 11 N -0.391 5.391 12 C -0.381 4.381 13 H 0.092 0.908 14 C -0.269 4.269 15 N -0.621 5.621 16 Si 0.806 3.194 17 H -0.191 1.191 18 H -0.217 1.217 19 H -0.217 1.217 20 C -0.143 4.143 21 C -0.139 4.139 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.155 0.845 32 H 0.140 0.860 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.207 0.793 38 H 0.062 0.938 39 H 0.140 0.860 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -25.238 5.045 4.148 26.070 hybrid contribution 1.333 -0.290 -0.291 1.395 sum -23.905 4.755 3.857 24.676 Atomic orbital electron populations 1.21827 0.94017 1.02159 1.02175 1.21057 0.96206 0.96192 0.97314 1.21920 1.00930 0.96001 1.01972 1.20695 0.89391 1.01874 0.98918 1.20094 0.96716 0.94162 0.97762 1.21197 0.92779 0.99311 1.00052 1.21207 0.95662 0.97914 0.99625 1.19810 0.94521 0.95560 0.99097 1.20594 0.91784 1.01049 0.97988 1.20681 0.83292 0.96637 0.95681 1.42620 1.02086 1.69991 1.24403 1.19677 0.90073 1.28731 0.99622 0.90815 1.25638 0.97373 1.02964 1.00876 1.69827 1.07173 1.52726 1.32338 0.85014 0.78377 0.77452 0.78550 1.19072 1.21708 1.21698 1.21196 0.94365 0.98459 1.00318 1.21218 0.94092 0.98577 0.99968 0.92191 0.92220 0.92370 0.91901 0.93391 0.92090 0.92596 0.90247 0.90326 0.84537 0.86017 0.91276 0.91287 0.96562 0.96565 0.79338 0.93817 0.86012 0.84434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.19 71.98 0.66 -0.89 16 2 C -0.09 -1.23 2.91 -10.79 -0.03 -1.26 16 3 C -0.15 -2.18 8.78 71.98 0.63 -1.55 16 4 C -0.07 -1.07 4.84 29.85 0.14 -0.93 16 5 C -0.09 -1.81 4.70 -19.87 -0.09 -1.91 16 6 C -0.12 -2.59 7.98 22.27 0.18 -2.42 16 7 C -0.13 -3.42 9.70 22.27 0.22 -3.21 16 8 C -0.09 -2.70 5.13 -19.86 -0.10 -2.80 16 9 C -0.08 -2.69 5.46 29.85 0.16 -2.53 16 10 C 0.16 7.09 6.24 86.38 0.54 7.63 16 11 N -0.75 -40.32 5.60 -343.45 -1.92 -42.24 16 12 C -0.25 -14.57 9.99 84.03 0.84 -13.73 16 13 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 14 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 15 N -0.97 -60.80 13.06 21.65 0.28 -60.52 16 16 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 19 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 20 C -0.13 -3.42 9.70 22.27 0.22 -3.20 16 21 C -0.12 -2.73 9.70 22.27 0.22 -2.51 16 22 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 23 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 0.83 6.28 -2.39 -0.01 0.82 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 30 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 31 H 0.14 2.46 8.05 -2.91 -0.02 2.44 16 32 H 0.12 3.18 8.06 -2.91 -0.02 3.16 16 33 H 0.07 2.43 8.09 -2.39 -0.02 2.41 16 34 H 0.07 2.42 8.09 -2.39 -0.02 2.40 16 35 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.37 21.16 7.67 -92.71 -0.71 20.45 16 38 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 40 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -65.85 329.16 4.71 -61.15 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.27 Total: 25.84 kcal Atomic # 6 Polarization: -37.42 SS G_CDS: 4.05 Total: -33.37 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -1.64 Total: -102.76 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -65.85 4.71 -61.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258669891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.931 kcal (2) G-P(sol) polarization free energy of solvation -65.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds