Wall clock time and date at job start Mon Mar 30 2020 06:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47285 * 2 1 4 4 H 1.09001 * 109.46840 * 305.00385 * 3 2 1 5 5 C 1.53001 * 109.46940 * 64.99803 * 3 2 1 6 6 C 1.50692 * 109.47203 * 185.00288 * 3 2 1 7 7 C 1.38236 * 120.00099 * 120.00051 * 6 3 2 8 8 C 1.38239 * 119.99935 * 179.97438 * 7 6 3 9 9 C 1.38235 * 119.99702 * 359.97184 * 8 7 6 10 10 C 1.50703 * 119.99548 * 180.02562 * 9 8 7 11 11 N 1.46503 * 109.47097 * 90.00903 * 10 9 8 12 12 C 1.46491 * 120.00471 * 89.99578 * 11 10 9 13 13 C 1.36937 * 119.99572 * 269.99904 * 11 10 9 14 14 H 1.08007 * 120.00376 * 23.04400 * 13 11 10 15 15 C 1.38811 * 120.00065 * 203.04343 * 13 11 10 16 16 N 1.31618 * 119.99982 * 13.04015 * 15 13 11 17 17 Si 1.86797 * 120.00157 * 193.05173 * 15 13 11 18 18 H 1.48501 * 109.47751 * 89.99799 * 17 15 13 19 19 H 1.48505 * 109.47204 * 209.99502 * 17 15 13 20 20 H 1.48506 * 109.47222 * 329.99353 * 17 15 13 21 21 C 1.38230 * 120.00508 * 0.28289 * 9 8 7 22 22 C 1.38236 * 119.99640 * 359.50845 * 21 9 8 23 23 H 1.08997 * 109.47035 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47001 * 300.00030 * 1 2 3 25 25 H 1.09000 * 109.47323 * 59.99814 * 1 2 3 26 26 H 1.09001 * 109.47046 * 240.00353 * 2 1 3 27 27 H 1.09000 * 109.47323 * 120.00186 * 2 1 3 28 28 H 1.08997 * 109.47212 * 300.00142 * 5 3 2 29 29 H 1.08998 * 109.46660 * 60.00119 * 5 3 2 30 30 H 1.09000 * 109.46868 * 180.02562 * 5 3 2 31 31 H 1.07998 * 120.00044 * 359.97438 * 7 6 3 32 32 H 1.07998 * 119.99886 * 180.02562 * 8 7 6 33 33 H 1.08996 * 109.47282 * 330.00809 * 10 9 8 34 34 H 1.08996 * 109.47238 * 210.00414 * 10 9 8 35 35 H 1.09000 * 109.47055 * 95.12631 * 12 11 10 36 36 H 1.08998 * 109.47591 * 215.12691 * 12 11 10 37 37 H 1.09000 * 109.47177 * 335.13054 * 12 11 10 38 38 H 0.97000 * 120.00460 * 179.97438 * 16 15 13 39 39 H 1.07997 * 120.00173 * 179.72131 * 21 9 8 40 40 H 1.07999 * 119.99833 * 180.27439 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4443 -0.1239 7 6 4.1462 2.0736 -1.1961 8 6 5.5240 2.0756 -1.3095 9 6 6.2973 1.4489 -0.3502 10 6 7.7993 1.4517 -0.4735 11 7 8.3431 2.6284 0.2090 12 6 8.7045 2.5513 1.6265 13 6 8.5135 3.8006 -0.4782 14 1 7.9347 3.9932 -1.3695 15 6 9.4302 4.7413 -0.0293 16 7 10.3119 4.4139 0.8914 17 14 9.4124 6.4721 -0.7318 18 1 8.5112 7.3274 0.0816 19 1 10.7872 7.0327 -0.7017 20 1 8.9247 6.4322 -2.1340 21 6 5.6928 0.8151 0.7192 22 6 4.3153 0.8168 0.8348 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.5490 2.1252 1.3969 29 1 2.0699 1.5874 2.1491 30 1 1.9983 3.1543 1.3071 31 1 3.5421 2.5636 -1.9453 32 1 5.9961 2.5676 -2.1469 33 1 8.0773 1.4819 -1.5270 34 1 8.2030 0.5481 -0.0170 35 1 9.7681 2.3314 1.7188 36 1 8.4873 3.5040 2.1093 37 1 8.1272 1.7609 2.1062 38 1 10.9527 5.0711 1.2049 39 1 6.2968 0.3216 1.4661 40 1 3.8431 0.3254 1.6727 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258741847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:40 Heat of formation + Delta-G solvation = 23.842860 kcal Electronic energy + Delta-G solvation = -17793.375603 eV Core-core repulsion = 15186.844071 eV Total energy + Delta-G solvation = -2606.531532 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.27422 -36.50015 -34.97900 -31.87262 -30.44033 -30.39883 -28.78881 -26.11728 -25.67453 -24.10075 -22.45270 -21.61934 -20.48675 -19.43382 -16.67093 -16.00369 -15.24059 -14.94885 -14.72948 -14.31122 -13.91538 -13.54460 -13.35829 -13.12706 -12.92620 -12.69807 -12.33769 -12.03274 -11.80072 -11.69608 -11.30928 -11.10714 -10.87898 -10.85316 -10.70524 -10.60008 -10.50553 -10.21348 -10.14823 -9.91094 -9.85661 -8.53086 -8.37724 -7.96797 -6.70686 -5.68303 -3.15258 1.90227 1.94822 3.40724 3.46937 3.47960 4.25618 4.57020 4.75286 4.83361 5.02255 5.28513 5.40100 5.44333 5.45526 5.48655 5.51226 5.61680 5.73000 5.80112 5.84962 5.88454 5.90366 5.97960 6.05316 6.12951 6.25061 6.31484 6.34656 6.57017 6.64347 6.71314 6.78953 7.00162 7.05803 7.35469 7.41434 7.57924 7.75817 7.84518 8.43200 9.27210 9.90172 10.39337 11.36291 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.032840 B = 0.004948 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.413515 B = 5656.965219 C = 5974.362916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.047 4.047 4 H 0.072 0.928 5 C -0.144 4.144 6 C -0.097 4.097 7 C -0.122 4.122 8 C -0.103 4.103 9 C -0.080 4.080 10 C 0.181 3.819 11 N -0.594 5.594 12 C 0.163 3.837 13 C -0.252 4.252 14 H 0.067 0.933 15 C 0.002 3.998 16 N -0.908 5.908 17 Si 0.903 3.097 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.279 1.279 21 C -0.113 4.113 22 C -0.119 4.119 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.032 0.968 36 H 0.039 0.961 37 H -0.003 1.003 38 H 0.252 0.748 39 H 0.113 0.887 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.930 -8.210 -0.923 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.066 4.066 4 H 0.090 0.910 5 C -0.201 4.201 6 C -0.097 4.097 7 C -0.140 4.140 8 C -0.121 4.121 9 C -0.083 4.083 10 C 0.054 3.946 11 N -0.315 5.315 12 C 0.019 3.981 13 C -0.381 4.381 14 H 0.085 0.915 15 C -0.196 4.196 16 N -0.553 5.553 17 Si 0.734 3.266 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.205 1.205 21 C -0.132 4.132 22 C -0.137 4.137 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.016 0.984 38 H 0.062 0.938 39 H 0.131 0.869 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.743 -8.095 -0.831 17.722 hybrid contribution 0.049 1.155 -0.226 1.178 sum -15.695 -6.940 -1.057 17.193 Atomic orbital electron populations 1.21839 0.96122 1.01321 1.01789 1.21580 0.95287 0.96179 1.02210 1.20091 0.91707 0.96185 0.98598 0.91002 1.21886 1.00578 1.00795 0.96887 1.19625 0.94451 0.99879 0.95773 1.20949 0.94842 1.00335 0.97868 1.21016 0.93072 0.98710 0.99348 1.21173 0.99169 0.94493 0.93483 1.19788 0.86902 0.90531 0.97386 1.43858 1.73107 1.07812 1.06769 1.20793 0.97124 0.97141 0.83047 1.19180 1.16260 0.93753 1.08947 0.91502 1.24994 0.96031 0.99193 0.99391 1.70070 1.19209 1.33174 1.32867 0.86268 0.76775 0.84904 0.78688 1.21556 1.21751 1.20472 1.20987 0.94128 1.00216 0.97870 1.20805 0.93716 1.00611 0.98548 0.93004 0.92536 0.92891 0.91977 0.91912 0.92649 0.92572 0.92574 0.87127 0.86528 0.92605 0.93702 0.94989 0.94248 0.98419 0.93804 0.86901 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 37.16 0.36 -0.92 16 2 C -0.12 -1.17 5.14 -26.73 -0.14 -1.30 16 3 C -0.05 -0.55 2.56 -91.77 -0.24 -0.79 16 4 H 0.07 0.80 7.88 -51.93 -0.41 0.39 16 5 C -0.14 -1.58 8.76 37.16 0.33 -1.26 16 6 C -0.10 -1.43 4.78 -104.63 -0.50 -1.93 16 7 C -0.12 -1.94 9.67 -39.58 -0.38 -2.32 16 8 C -0.10 -1.87 9.70 -39.58 -0.38 -2.25 16 9 C -0.08 -1.54 5.46 -104.62 -0.57 -2.11 16 10 C 0.18 3.85 5.77 -5.19 -0.03 3.82 16 11 N -0.59 -15.29 2.90 -182.51 -0.53 -15.82 16 12 C 0.16 4.14 8.98 59.84 0.54 4.68 16 13 C -0.25 -7.04 9.65 -15.06 -0.15 -7.19 16 14 H 0.07 1.83 7.86 -52.48 -0.41 1.42 16 15 C 0.00 0.06 5.10 -17.43 -0.09 -0.03 16 16 N -0.91 -26.93 10.71 55.49 0.59 -26.34 16 17 Si 0.90 22.28 29.57 -169.99 -5.03 17.25 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.11 -1.97 9.70 -39.59 -0.38 -2.35 16 22 C -0.12 -1.82 8.76 -39.58 -0.35 -2.16 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.64 7.57 -51.93 -0.39 0.24 16 28 H 0.05 0.51 6.56 -51.93 -0.34 0.17 16 29 H 0.06 0.62 7.39 -51.93 -0.38 0.23 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.11 1.52 7.95 -52.49 -0.42 1.11 16 32 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 33 H 0.06 1.17 7.98 -51.93 -0.41 0.76 16 34 H 0.04 0.88 8.01 -51.93 -0.42 0.47 16 35 H 0.03 0.87 7.34 -51.93 -0.38 0.48 16 36 H 0.04 1.07 7.34 -51.93 -0.38 0.69 16 37 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 38 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 39 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.11 1.45 7.16 -52.49 -0.38 1.07 16 LS Contribution 322.87 15.07 4.87 4.87 Total: -1.00 -30.03 322.87 -8.84 -38.87 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.76 Total: -2.72 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -1.98 Total: -16.11 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.06 Total: -42.16 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.03 -8.84 -38.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258741847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.709 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds